Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8060D19.3 |
| Conread position: | 283-772 |
| Cow position: | chr23:29451253-29450747 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 132 |
| Conread position: | 292-718 |
| Cow position: | chr23:14777849-14777431 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 121 |
| Conread position: | 296-589 |
| Cow position: | chr23:14923185-14922882 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 217 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 118, 255 |
| Conread position: | 296-609 |
| Cow position: | chr23:14262977-14263308 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 296-752 |
| Cow position: | chr23:19949477-19949021 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 239 |
| Conread position: | 296-772 |
| Cow position: | chr23:28218532-28219012 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 257 |
| Conread position: | 297-538 |
| Cow position: | chr23:780903-780661 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 122, 89 |
| Conread position: | 297-583 |
| Cow position: | chr23:5739242-5738953 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 98, 54 |
| Conread position: | 297-601 |
| Cow position: | chr23:7045058-7044757 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 216 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 141, 118 |
| Conread position: | 297-601 |
| Cow position: | chr23:11077070-11076757 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 227 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 21, 236 |
| Conread position: | 297-716 |
| Cow position: | chr23:2794140-2793726 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 31 |
| Conread position: | 297-770 |
| Cow position: | chr23:22146196-22145721 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 260 |
| Conread position: | 297-771 |
| Cow position: | chr23:30237383-30237870 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 111 |
| Conread position: | 297-772 |
| Cow position: | chr23:5873461-5872985 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 40 |
| Conread position: | 297-772 |
| Cow position: | chr23:16498124-16497661 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 24 |
| Conread position: | 297-772 |
| Cow position: | chr23:21243624-21243150 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 87 |
| Conread position: | 297-772 |
| Cow position: | chr23:22167786-22168227 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 111 |
| Conread position: | 297-773 |
| Cow position: | chr23:2342204-2342666 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 145 |
| Conread position: | 298-535 |
| Cow position: | chr23:1957001-1957241 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 115, 158 |
| Conread position: | 298-574 |
| Cow position: | chr23:26159593-26159290 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 214 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 112, 70 |
| Conread position: | 298-602 |
| Cow position: | chr23:14963930-14963625 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 231 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 115, 30 |
| Conread position: | 298-704 |
| Cow position: | chr23:37716618-37717018 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 284 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 120, 110 |
| Conread position: | 298-732 |
| Cow position: | chr23:23282343-23282755 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 232 |
| Conread position: | 298-757 |
| Cow position: | chr23:27400638-27401096 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 259 |
| Conread position: | 298-761 |
| Cow position: | chr23:2025964-2025505 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 30 |
| Conread position: | 298-772 |
| Cow position: | chr23:2759006-2759485 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 267 |
| Conread position: | 298-772 |
| Cow position: | chr23:3879969-3879499 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 146 |
| Conread position: | 298-772 |
| Cow position: | chr23:4818138-4818609 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 259 |
| Conread position: | 298-772 |
| Cow position: | chr23:4889802-4890269 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 256 |
| Conread position: | 298-772 |
| Cow position: | chr23:11779901-11780366 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 42 |
| Conread position: | 298-772 |
| Cow position: | chr23:15526683-15527164 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 63 |
| Conread position: | 298-772 |
| Cow position: | chr23:36030261-36029793 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 62 |
| Conread position: | 298-784 |
| Cow position: | chr23:13512224-13512684 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 23 |
| Conread position: | 299-552 |
| Cow position: | chr23:25682838-25682582 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 81, 85 |
| Conread position: | 301-580 |
| Cow position: | chr23:19451266-19451550 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 117, 107 |
| Conread position: | 301-597 |
| Cow position: | chr23:15041646-15041356 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 208 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 103, 192 |
| Conread position: | 301-770 |
| Cow position: | chr23:15876450-15875985 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 105 |
| Conread position: | 301-772 |
| Cow position: | chr23:1012681-1012232 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 306 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 87, 36 |
| Conread position: | 301-772 |
| Cow position: | chr23:1022839-1022373 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 36 |
| Conread position: | 301-772 |
| Cow position: | chr23:14972856-14972369 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 248 |
| Conread position: | 302-602 |
| Cow position: | chr23:38581834-38582117 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 226 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 134, 101 |
| Conread position: | 304-761 |
| Cow position: | chr23:19490665-19491126 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 238 |
| Conread position: | 304-772 |
| Cow position: | chr23:15178197-15178650 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 17 |
| Conread position: | 304-779 |
| Cow position: | chr23:20155091-20154634 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 132 |
| Conread position: | 305-601 |
| Cow position: | chr23:21822157-21821870 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 58 |
| Conread position: | 306-537 |
| Cow position: | chr23:14945447-14945221 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 160, 108 |
| Conread position: | 306-772 |
| Cow position: | chr23:965369-964908 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 34 |
| Conread position: | 307-772 |
| Cow position: | chr23:41142105-41141640 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 57 |
| Conread position: | 310-772 |
| Cow position: | chr23:16054904-16055360 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 100 |
| Conread position: | 310-779 |
| Cow position: | chr23:31648894-31648439 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 98 |
| Conread position: | 330-770 |
| Cow position: | chr23:2718459-2718898 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 41 |
| Conread position: | 331-602 |
| Cow position: | chr23:13510770-13511042 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 87, 104 |
| Conread position: | 331-772 |
| Cow position: | chr23:11714722-11714279 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 225 |
| Conread position: | 332-600 |
| Cow position: | chr23:2576563-2576832 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 133, 112 |
| Conread position: | 332-784 |
| Cow position: | chr23:16614025-16613588 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 6 |
| Conread position: | 333-771 |
| Cow position: | chr23:4513619-4514069 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 289 |
| Conread position: | 344-773 |
| Cow position: | chr23:29647161-29646751 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 284 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 46, 29 |
| Conread position: | 362-772 |
| Cow position: | chr23:38691668-38692078 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 173 |
| Conread position: | 400-599 |
| Cow position: | chr23:2440040-2439839 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 9, 42 |
| Conread position: | 434-758 |
| Cow position: | chr23:22942731-22942400 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 16 |
| Conread position: | 434-761 |
| Cow position: | chr23:4639333-4639017 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 233 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 54, 32 |
| Conread position: | 434-772 |
| Cow position: | chr23:7314165-7314497 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 114 |
| Conread position: | 434-772 |
| Cow position: | chr23:23172035-23172363 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 112 |
| Conread position: | 468-774 |
| Cow position: | chr23:17878469-17878172 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 17, 75 |
| Conread position: | 529-772 |
| Cow position: | chr23:1957521-1957757 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 232, 19 |
| Conread position: | 529-772 |
| Cow position: | chr23:31164158-31164390 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 128, 19 |
| Conread position: | 532-771 |
| Cow position: | chr23:26838176-26838404 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 126, 72 |
| Conread position: | 603-761 |
| Cow position: | chr23:4435061-4435227 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 35, 127 |
| Conread position: | 603-761 |
| Cow position: | chr23:15218472-15218313 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 72, 35 |
| Conread position: | 603-772 |
| Cow position: | chr23:28304324-28304502 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 35, 49 |
| Conread position: | 603-772 |
| Cow position: | chr23:32351353-32351175 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 33, 132 |
| Conread position: | 604-717 |
| Cow position: | chr23:26159236-26159118 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 34, 59 |
| Conread position: | 604-772 |
| Cow position: | chr23:4361408-4361577 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 32, 124 |
| Conread position: | 604-772 |
| Cow position: | chr23:38579117-38579283 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 126, 58 |
| Conread position: | 608-772 |
| Cow position: | chr23:8287354-8287527 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 35, 129 |
| Conread position: | 623-772 |
| Cow position: | chr23:608144-608302 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 15, 29 |
| Conread position: | 623-775 |
| Cow position: | chr23:14961518-14961362 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 52, 24 |
| Conread position: | 647-772 |
| Cow position: | chr23:25677834-25677712 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 114, 73 |
Show alignments to all cow chromosomes.