Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8060D19.3 |
| Conread position: | 296-772 |
| Cow position: | chr25:13693507-13693029 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 255 |
| Conread position: | 296-772 |
| Cow position: | chr25:17588395-17587928 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 255 |
| Conread position: | 297-580 |
| Cow position: | chr25:33576017-33575724 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 121, 25 |
| Conread position: | 297-602 |
| Cow position: | chr25:13454417-13454116 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 224 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 83, 38 |
| Conread position: | 297-602 |
| Cow position: | chr25:24659050-24658736 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 171 |
| Conread position: | 297-761 |
| Cow position: | chr25:30266656-30267114 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 111 |
| Conread position: | 297-766 |
| Cow position: | chr25:14957287-14956834 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 211 |
| Conread position: | 297-772 |
| Cow position: | chr25:11931616-11931156 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 24 |
| Conread position: | 297-772 |
| Cow position: | chr25:18305312-18305777 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 50 |
| Conread position: | 297-773 |
| Cow position: | chr25:15365116-15365576 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 43 |
| Conread position: | 297-779 |
| Cow position: | chr25:26928463-26928923 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 314 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 151, 111 |
| Conread position: | 297-788 |
| Cow position: | chr25:17655602-17656076 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 204 |
| Conread position: | 298-432 |
| Cow position: | chr25:34506525-34506388 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 298-539 |
| Cow position: | chr25:18182882-18183126 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 43, 30 |
| Conread position: | 298-761 |
| Cow position: | chr25:36636518-36636076 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 310 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 43, 66 |
| Conread position: | 298-771 |
| Cow position: | chr25:13782198-13782685 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 49 |
| Conread position: | 298-772 |
| Cow position: | chr25:11041530-11041986 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 324 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 111, 181 |
| Conread position: | 298-772 |
| Cow position: | chr25:12941509-12941034 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 260 |
| Conread position: | 298-772 |
| Cow position: | chr25:18273606-18273145 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 91 |
| Conread position: | 298-772 |
| Cow position: | chr25:20630792-20631263 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 86 |
| Conread position: | 298-772 |
| Cow position: | chr25:22148703-22149180 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 30 |
| Conread position: | 301-576 |
| Cow position: | chr25:34676864-34676584 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 120, 112 |
| Conread position: | 301-772 |
| Cow position: | chr25:17559394-17558926 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 138 |
| Conread position: | 301-772 |
| Cow position: | chr25:18192595-18192121 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 168 |
| Conread position: | 301-772 |
| Cow position: | chr25:18888575-18888105 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 253 |
| Conread position: | 301-772 |
| Cow position: | chr25:27021419-27020957 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 137 |
| Conread position: | 304-517 |
| Cow position: | chr25:26899853-26900078 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 101, 164 |
| Conread position: | 304-772 |
| Cow position: | chr25:25507872-25508346 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 256 |
| Conread position: | 305-772 |
| Cow position: | chr25:18177869-18178324 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 23 |
| Conread position: | 305-772 |
| Cow position: | chr25:34345833-34345365 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 316 |
| Conread position: | 306-609 |
| Cow position: | chr25:32902088-32902399 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 59, 254 |
| Conread position: | 306-771 |
| Cow position: | chr25:18251741-18251298 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 319 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 114, 63 |
| Conread position: | 307-772 |
| Cow position: | chr25:20774198-20773732 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 57 |
| Conread position: | 307-787 |
| Cow position: | chr25:21902209-21902688 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 233 |
| Conread position: | 310-600 |
| Cow position: | chr25:3974210-3974505 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 104, 61 |
| Conread position: | 311-773 |
| Cow position: | chr25:18486373-18485928 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 55 |
| Conread position: | 312-761 |
| Cow position: | chr25:19921710-19922167 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 326 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 97, 12 |
| Conread position: | 331-772 |
| Cow position: | chr25:13062513-13062071 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 189 |
| Conread position: | 343-541 |
| Cow position: | chr25:30131754-30131547 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 37, 44 |
| Conread position: | 352-751 |
| Cow position: | chr25:27523379-27522997 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 61 |
| Conread position: | 383-773 |
| Cow position: | chr25:12757881-12757482 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 280 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 30, 12 |
| Conread position: | 431-771 |
| Cow position: | chr25:9392939-9393272 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 233 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 47, 10 |
| Conread position: | 434-774 |
| Cow position: | chr25:30149405-30149064 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 224 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 23, 120 |
| Conread position: | 436-773 |
| Cow position: | chr25:16431858-16431511 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 233 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 49, 96 |
| Conread position: | 437-601 |
| Cow position: | chr25:39461641-39461479 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 438-772 |
| Cow position: | chr25:19339286-19338961 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 22 |
| Conread position: | 497-709 |
| Cow position: | chr25:33614220-33614424 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 505-772 |
| Cow position: | chr25:20346602-20346344 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 193 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 256, 40 |
| Conread position: | 558-772 |
| Cow position: | chr25:32580955-32581161 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 162, 46 |
| Conread position: | 603-782 |
| Cow position: | chr25:13772070-13771897 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 157, 26 |
| Conread position: | 604-772 |
| Cow position: | chr25:16924942-16924763 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 37, 135 |
Show alignments to all cow chromosomes.