Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8060D19.3 |
| Conread position: | 296-772 |
| Cow position: | chr27:1677466-1676980 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 67 |
| Conread position: | 296-772 |
| Cow position: | chr27:23292398-23292846 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 31 |
| Conread position: | 297-580 |
| Cow position: | chr27:16425847-16426134 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 52, 9 |
| Conread position: | 297-761 |
| Cow position: | chr27:8735302-8735751 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 116 |
| Conread position: | 298-600 |
| Cow position: | chr27:25331970-25331669 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 118, 31 |
| Conread position: | 298-761 |
| Cow position: | chr27:3234417-3233942 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 268 |
| Conread position: | 298-761 |
| Cow position: | chr27:5912035-5912498 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 228 |
| Conread position: | 298-772 |
| Cow position: | chr27:4980491-4980964 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 30 |
| Conread position: | 298-772 |
| Cow position: | chr27:9330853-9331326 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 30 |
| Conread position: | 298-772 |
| Cow position: | chr27:9992081-9991624 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 230 |
| Conread position: | 298-772 |
| Cow position: | chr27:15274945-15274475 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 39 |
| Conread position: | 298-772 |
| Cow position: | chr27:15636228-15635751 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 262 |
| Conread position: | 298-772 |
| Cow position: | chr27:26326193-26326653 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 53 |
| Conread position: | 298-772 |
| Cow position: | chr27:27664119-27664587 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 95 |
| Conread position: | 298-773 |
| Cow position: | chr27:1210474-1210949 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 30 |
| Conread position: | 301-510 |
| Cow position: | chr27:14459325-14459102 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 167 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 112, 219 |
| Conread position: | 301-511 |
| Cow position: | chr27:18425554-18425766 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 32, 27 |
| Conread position: | 301-519 |
| Cow position: | chr27:6160878-6160649 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 120, 104 |
| Conread position: | 301-761 |
| Cow position: | chr27:25803571-25803116 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 163 |
| Conread position: | 301-771 |
| Cow position: | chr27:19259818-19260289 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 163 |
| Conread position: | 301-772 |
| Cow position: | chr27:13898443-13898904 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 137 |
| Conread position: | 302-773 |
| Cow position: | chr27:28892718-28893201 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 329 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 39, 97 |
| Conread position: | 302-784 |
| Cow position: | chr27:26554276-26553837 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 87 |
| Conread position: | 307-591 |
| Cow position: | chr27:22034390-22034679 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 212 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 24, 20 |
| Conread position: | 308-602 |
| Cow position: | chr27:7419857-7420155 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 199 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 23, 76 |
| Conread position: | 310-772 |
| Cow position: | chr27:21335068-21335527 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 306 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 110, 63 |
| Conread position: | 311-609 |
| Cow position: | chr27:23904863-23904561 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 30, 17 |
| Conread position: | 311-771 |
| Cow position: | chr27:25084710-25085143 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 307 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 94, 184 |
| Conread position: | 311-772 |
| Cow position: | chr27:16033274-16032811 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 153 |
| Conread position: | 312-773 |
| Cow position: | chr27:2377645-2378119 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 321 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 111, 16 |
| Conread position: | 317-769 |
| Cow position: | chr27:1575735-1576187 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 304 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 103, 46 |
| Conread position: | 318-761 |
| Cow position: | chr27:30911371-30911809 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 286 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 91, 152 |
| Conread position: | 326-751 |
| Cow position: | chr27:16552015-16552455 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 10 |
| Conread position: | 331-589 |
| Cow position: | chr27:11486463-11486716 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 69, 13 |
| Conread position: | 361-607 |
| Cow position: | chr27:22150127-22150379 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 10, 60 |
| Conread position: | 369-770 |
| Cow position: | chr27:28079603-28079998 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 290 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 44, 183 |
| Conread position: | 429-772 |
| Cow position: | chr27:8199083-8199400 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 239 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 8, 20 |
| Conread position: | 434-580 |
| Cow position: | chr27:16264613-16264760 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 10, 110 |
| Conread position: | 434-772 |
| Cow position: | chr27:798307-797975 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 26 |
| Conread position: | 436-609 |
| Cow position: | chr27:2622171-2622343 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 124 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 52, 19 |
| Conread position: | 442-769 |
| Cow position: | chr27:1848084-1847784 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 218 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 319, 51 |
| Conread position: | 442-771 |
| Cow position: | chr27:12748304-12748628 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 110 |
| Conread position: | 468-771 |
| Cow position: | chr27:167632-167337 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 23, 74 |
| Conread position: | 468-772 |
| Cow position: | chr27:19524848-19525137 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 226 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 23, 83 |
| Conread position: | 541-772 |
| Cow position: | chr27:29056529-29056752 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 220, 63 |
| Conread position: | 549-771 |
| Cow position: | chr27:6160492-6160278 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 155 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 109, 53 |
| Conread position: | 551-773 |
| Cow position: | chr27:27194979-27194763 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 76, 60 |
| Conread position: | 614-772 |
| Cow position: | chr27:1900613-1900446 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 22, 123 |
| Conread position: | 632-772 |
| Cow position: | chr27:10327283-10327137 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 14, 109 |
Show alignments to all cow chromosomes.