Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8060D19.3 |
| Conread position: | 296-481 |
| Cow position: | chr28:24883823-24883630 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 296-761 |
| Cow position: | chr28:9179775-9180234 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 255 |
| Conread position: | 296-772 |
| Cow position: | chr28:484433-483958 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 168 |
| Conread position: | 296-772 |
| Cow position: | chr28:1954516-1954991 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 257 |
| Conread position: | 296-772 |
| Cow position: | chr28:6778779-6778305 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 64 |
| Conread position: | 296-772 |
| Cow position: | chr28:7827149-7827617 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 41 |
| Conread position: | 296-772 |
| Cow position: | chr28:22042125-22041649 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 239 |
| Conread position: | 296-772 |
| Cow position: | chr28:22232116-22231653 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 195 |
| Conread position: | 297-470 |
| Cow position: | chr28:13374092-13373915 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 130, 111 |
| Conread position: | 297-519 |
| Cow position: | chr28:7788735-7788508 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 170 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 111, 176 |
| Conread position: | 297-554 |
| Cow position: | chr28:5913294-5913037 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 106, 43 |
| Conread position: | 297-771 |
| Cow position: | chr28:15587251-15587703 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 317 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 127, 107 |
| Conread position: | 297-771 |
| Cow position: | chr28:21566623-21567075 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 109 |
| Conread position: | 297-772 |
| Cow position: | chr28:1386234-1385774 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 70 |
| Conread position: | 297-772 |
| Cow position: | chr28:5799458-5799928 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 17 |
| Conread position: | 297-773 |
| Cow position: | chr28:698408-698913 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 340 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 121, 109 |
| Conread position: | 298-516 |
| Cow position: | chr28:11490092-11489875 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 160, 115 |
| Conread position: | 298-554 |
| Cow position: | chr28:25168951-25168694 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 81, 86 |
| Conread position: | 298-600 |
| Cow position: | chr28:10496368-10496071 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 228 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 118, 231 |
| Conread position: | 298-761 |
| Cow position: | chr28:5567304-5567748 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 30 |
| Conread position: | 298-767 |
| Cow position: | chr28:12409070-12408596 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 23 |
| Conread position: | 298-771 |
| Cow position: | chr28:18519284-18518812 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 30 |
| Conread position: | 298-772 |
| Cow position: | chr28:783821-784293 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 261 |
| Conread position: | 298-772 |
| Cow position: | chr28:1506031-1506502 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 159 |
| Conread position: | 298-772 |
| Cow position: | chr28:2085623-2086101 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 261 |
| Conread position: | 298-772 |
| Cow position: | chr28:3191091-3190616 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 170 |
| Conread position: | 298-772 |
| Cow position: | chr28:5750543-5750067 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 263 |
| Conread position: | 298-772 |
| Cow position: | chr28:5765902-5766367 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 23 |
| Conread position: | 298-772 |
| Cow position: | chr28:5938651-5939124 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 30 |
| Conread position: | 298-772 |
| Cow position: | chr28:7003161-7003632 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 52 |
| Conread position: | 298-772 |
| Cow position: | chr28:7741606-7742069 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 230 |
| Conread position: | 298-772 |
| Cow position: | chr28:8380228-8380673 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 463, 119 |
| Conread position: | 298-772 |
| Cow position: | chr28:14704223-14703747 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 257 |
| Conread position: | 298-772 |
| Cow position: | chr28:17389565-17390037 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 110 |
| Conread position: | 298-772 |
| Cow position: | chr28:22259987-22259518 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 250 |
| Conread position: | 298-772 |
| Cow position: | chr28:26425090-26424626 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 167 |
| Conread position: | 298-772 |
| Cow position: | chr28:29821160-29821622 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 258 |
| Conread position: | 298-791 |
| Cow position: | chr28:17666142-17665650 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 146 |
| Conread position: | 301-601 |
| Cow position: | chr28:14232765-14232447 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 107 |
| Conread position: | 301-602 |
| Cow position: | chr28:12648515-12648200 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 22 |
| Conread position: | 301-716 |
| Cow position: | chr28:14194371-14193986 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 267 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 301-767 |
| Cow position: | chr28:32791211-32790768 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 27 |
| Conread position: | 301-771 |
| Cow position: | chr28:5803206-5803655 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 319 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 36, 87 |
| Conread position: | 301-772 |
| Cow position: | chr28:15034956-15034475 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 259 |
| Conread position: | 301-772 |
| Cow position: | chr28:24590024-24590493 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 113 |
| Conread position: | 301-772 |
| Cow position: | chr28:24668777-24669233 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 91 |
| Conread position: | 302-773 |
| Cow position: | chr28:18146568-18146108 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 337 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 129, 26 |
| Conread position: | 304-726 |
| Cow position: | chr28:10460439-10460025 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 288 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 115, 237 |
| Conread position: | 304-770 |
| Cow position: | chr28:1166709-1166259 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 85 |
| Conread position: | 304-771 |
| Cow position: | chr28:10646255-10645802 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 42 |
| Conread position: | 304-772 |
| Cow position: | chr28:7811608-7812050 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 76 |
| Conread position: | 306-772 |
| Cow position: | chr28:13461148-13461607 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 251 |
| Conread position: | 306-792 |
| Cow position: | chr28:523472-523951 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 311 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 232, 72 |
| Conread position: | 310-772 |
| Cow position: | chr28:21360671-21361129 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 18 |
| Conread position: | 312-589 |
| Cow position: | chr28:12423433-12423148 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 14, 90 |
| Conread position: | 312-772 |
| Cow position: | chr28:33253484-33253950 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 72 |
| Conread position: | 312-780 |
| Cow position: | chr28:17381680-17381227 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 63 |
| Conread position: | 317-609 |
| Cow position: | chr28:4575282-4574987 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 201, 72 |
| Conread position: | 330-609 |
| Cow position: | chr28:25039812-25039540 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 191 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 50, 54 |
| Conread position: | 337-770 |
| Cow position: | chr28:1216633-1216201 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 52 |
| Conread position: | 340-727 |
| Cow position: | chr28:28750187-28750577 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 272 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 40, 44 |
| Conread position: | 340-767 |
| Cow position: | chr28:5112937-5112493 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 234 |
| Conread position: | 355-772 |
| Cow position: | chr28:8719739-8719320 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 58 |
| Conread position: | 359-772 |
| Cow position: | chr28:15684683-15685102 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 292 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 75, 41 |
| Conread position: | 366-741 |
| Cow position: | chr28:2117210-2117582 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 267 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 55, 187 |
| Conread position: | 371-772 |
| Cow position: | chr28:10580644-10580238 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 173 |
| Conread position: | 375-761 |
| Cow position: | chr28:18100242-18099875 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 262 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 63, 39 |
| Conread position: | 402-770 |
| Cow position: | chr28:6537538-6537176 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 33 |
| Conread position: | 417-772 |
| Cow position: | chr28:6786548-6786887 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 258 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 19, 105 |
| Conread position: | 434-727 |
| Cow position: | chr28:14752090-14752377 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 58, 70 |
| Conread position: | 434-772 |
| Cow position: | chr28:1459399-1459731 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 114 |
| Conread position: | 434-772 |
| Cow position: | chr28:10615683-10615366 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 44, 22 |
| Conread position: | 438-602 |
| Cow position: | chr28:24884225-24884383 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 438-772 |
| Cow position: | chr28:34595541-34595868 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 237 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 53, 12 |
| Conread position: | 441-773 |
| Cow position: | chr28:13604071-13604396 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 230 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 44, 104 |
| Conread position: | 442-772 |
| Cow position: | chr28:12151643-12151961 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 240 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 17, 32 |
| Conread position: | 444-609 |
| Cow position: | chr28:11510966-11510792 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 447-762 |
| Cow position: | chr28:10470984-10471281 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 232 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 44, 24 |
| Conread position: | 464-772 |
| Cow position: | chr28:33637876-33638180 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 87 |
| Conread position: | 488-726 |
| Cow position: | chr28:10067969-10067747 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 187, 57 |
| Conread position: | 504-772 |
| Cow position: | chr28:1813552-1813297 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 198 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 136, 44 |
| Conread position: | 604-772 |
| Cow position: | chr28:9288409-9288583 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 31, 128 |
| Conread position: | 604-786 |
| Cow position: | chr28:5814692-5814877 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 146 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 34, 58 |
| Conread position: | 612-773 |
| Cow position: | chr28:11504766-11504604 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 34, 61 |
| Conread position: | 613-772 |
| Cow position: | chr28:25760939-25761105 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 18, 118 |
| Conread position: | 620-772 |
| Cow position: | chr28:7059186-7059032 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 21, 110 |
Show alignments to all cow chromosomes.