Cow genome map

Conread name: Ss1.1-Pig4-TMW8060D19.3

Conread position: 1-287
Cow position: chr29:32145899-32145612 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 0

Conread position: 294-772
Cow position: chr29:15997526-15997052 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 34

Conread position: 296-489
Cow position: chr29:35297944-35298145 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 144
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 118, 168

Conread position: 296-589
Cow position: chr29:35814848-35814546 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 216
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 118, 255

Conread position: 296-629
Cow position: chr29:31096255-31095914 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 195
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 113, 168

Conread position: 296-718
Cow position: chr29:42092887-42093312 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 255

Conread position: 296-720
Cow position: chr29:3328461-3328888 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 255

Conread position: 296-752
Cow position: chr29:18855823-18855366 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 255

Conread position: 296-761
Cow position: chr29:13583206-13583669 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 175

Conread position: 296-770
Cow position: chr29:42939070-42938604 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 169

Conread position: 296-772
Cow position: chr29:13622730-13622258 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 101

Conread position: 296-772
Cow position: chr29:27979797-27979321 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 32

Conread position: 297-535
Cow position: chr29:10822854-10822605 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 190
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 123, 85

Conread position: 297-563
Cow position: chr29:32804546-32804811 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 194
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 16, 74

Conread position: 297-580
Cow position: chr29:3176293-3176017 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 204
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 139, 109

Conread position: 297-595
Cow position: chr29:2465727-2465422 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 214
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 116, 65

Conread position: 297-601
Cow position: chr29:251875-252175 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 212
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 103, 111

Conread position: 297-770
Cow position: chr29:2747309-2746864 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 32

Conread position: 297-772
Cow position: chr29:5958718-5959175 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 160

Conread position: 297-772
Cow position: chr29:14085001-14084530 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 111

Conread position: 297-772
Cow position: chr29:42803539-42803991 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 206

Conread position: 297-784
Cow position: chr29:32891918-32892387 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 187

Conread position: 298-516
Cow position: chr29:43323687-43323910 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 162
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 99, 122

Conread position: 298-537
Cow position: chr29:47309-47053 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 189
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 82, 88

Conread position: 298-548
Cow position: chr29:7430089-7429823 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 195
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 110, 0

Conread position: 298-602
Cow position: chr29:45586252-45585962 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 209
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 99, 111

Conread position: 298-611
Cow position: chr29:10849882-10850196 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 211
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 120, 30

Conread position: 298-673
Cow position: chr29:10647120-10646756 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 267
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 115, 146

Conread position: 298-718
Cow position: chr29:3699086-3699485 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 296
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 129, 30

Conread position: 298-721
Cow position: chr29:5981580-5981161 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 88

Conread position: 298-770
Cow position: chr29:38228107-38228576 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 140

Conread position: 298-771
Cow position: chr29:38237393-38236935 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 321
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 31, 68

Conread position: 298-772
Cow position: chr29:2840213-2839743 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 30

Conread position: 298-772
Cow position: chr29:5236146-5236621 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 97

Conread position: 298-772
Cow position: chr29:14210440-14209952 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 327
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 144, 73

Conread position: 298-772
Cow position: chr29:14587050-14587519 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 30

Conread position: 298-772
Cow position: chr29:16023699-16024163 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 77

Conread position: 298-772
Cow position: chr29:19622153-19621672 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 259

Conread position: 298-772
Cow position: chr29:25931401-25930921 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 167

Conread position: 298-772
Cow position: chr29:26163704-26163233 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 30

Conread position: 298-772
Cow position: chr29:45205629-45206130 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 39

Conread position: 298-773
Cow position: chr29:34798680-34798210 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 141

Conread position: 298-782
Cow position: chr29:34525371-34525826 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 321
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 118, 39

Conread position: 301-771
Cow position: chr29:39078572-39078112 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 27

Conread position: 301-772
Cow position: chr29:16345339-16345812 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 258

Conread position: 301-772
Cow position: chr29:19654760-19655220 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 36

Conread position: 301-772
Cow position: chr29:32558625-32558151 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 251

Conread position: 302-519
Cow position: chr29:34873949-34874160 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 156
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 113, 26

Conread position: 304-761
Cow position: chr29:32541230-32541682 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 254

Conread position: 304-772
Cow position: chr29:20252302-20252765 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 121

Conread position: 304-772
Cow position: chr29:23977258-23977723 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 166

Conread position: 304-773
Cow position: chr29:15946673-15946228 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 326
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 17, 73

Conread position: 306-567
Cow position: chr29:9642654-9642384 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 203
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 120, 16

Conread position: 307-771
Cow position: chr29:38207537-38207065 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 168

Conread position: 307-772
Cow position: chr29:7845525-7845990 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 240

Conread position: 307-772
Cow position: chr29:31182542-31183002 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 204

Conread position: 308-718
Cow position: chr29:13651189-13651585 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 277
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 214, 97

Conread position: 312-772
Cow position: chr29:609500-609048 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 60

Conread position: 318-772
Cow position: chr29:14112690-14113142 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 107

Conread position: 323-750
Cow position: chr29:21425862-21425447 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 85

Conread position: 325-770
Cow position: chr29:8664664-8665103 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 88

Conread position: 333-771
Cow position: chr29:30259368-30258950 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 302
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 88, 80

Conread position: 333-772
Cow position: chr29:45460906-45461346 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 196

Conread position: 340-772
Cow position: chr29:2691336-2691762 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 104

Conread position: 340-772
Cow position: chr29:6264829-6264400 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 104

Conread position: 352-718
Cow position: chr29:16166418-16166059 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 254
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 71, 48

Conread position: 367-772
Cow position: chr29:36635191-36634783 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 287
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 63, 46

Conread position: 372-784
Cow position: chr29:19953829-19954234 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 288
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 52, 41

Conread position: 373-772
Cow position: chr29:2101038-2101439 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 186

Conread position: 386-761
Cow position: chr29:40501785-40501419 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 84

Conread position: 407-601
Cow position: chr29:21265949-21266148 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 143
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 36, 21

Conread position: 408-700
Cow position: chr29:12793480-12793751 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 205
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 19, 0

Conread position: 410-772
Cow position: chr29:647069-647410 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 261
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 7, 63

Conread position: 434-711
Cow position: chr29:6198485-6198213 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 199
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 33, 26

Conread position: 434-761
Cow position: chr29:19888853-19889174 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 240
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 49, 113

Conread position: 434-772
Cow position: chr29:10023064-10022732 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 109

Conread position: 434-772
Cow position: chr29:21431584-21431252 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 115

Conread position: 434-772
Cow position: chr29:27180485-27180153 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 114

Conread position: 434-772
Cow position: chr29:27262447-27262112 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 110

Conread position: 434-772
Cow position: chr29:29502991-29502659 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 29

Conread position: 435-772
Cow position: chr29:13851605-13851271 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 241
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 31, 118

Conread position: 435-788
Cow position: chr29:24335727-24335389 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 242
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 221, 54

Conread position: 436-772
Cow position: chr29:409977-409659 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 242
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 53, 13

Conread position: 438-773
Cow position: chr29:36596803-36596472 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 230
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 21, 37

Conread position: 450-772
Cow position: chr29:43324810-43325116 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 231
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 219, 96

Conread position: 450-784
Cow position: chr29:4633338-4633021 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 235
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 39, 9

Conread position: 462-761
Cow position: chr29:4516860-4517148 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 200
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 31, 73

Conread position: 462-772
Cow position: chr29:32287543-32287846 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 226
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 29, 81

Conread position: 503-772
Cow position: chr29:16172780-16172505 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 209
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 23, 94

Conread position: 507-771
Cow position: chr29:10822578-10822319 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 191
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 20, 102

Conread position: 529-772
Cow position: chr29:7429758-7429520 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 174
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 186, 19

Conread position: 541-772
Cow position: chr29:19526909-19526686 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 171
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 179, 63

Conread position: 546-769
Cow position: chr29:9641403-9641188 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 174
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 124, 8

Conread position: 572-772
Cow position: chr29:47066-46861 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 156
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 11, 78

Conread position: 603-772
Cow position: chr29:13018120-13018296 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 136
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 35, 128

Conread position: 603-772
Cow position: chr29:35298332-35298510 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 143
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 31, 132

Show alignments to all cow chromosomes.