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Cow genome map

           
Conread name:
           
Ss1.1-Pig4-TMW8060F06.3
        

               
Conread position:
               
748-959
               

               
Cow position:
               
chr29:37990760-37990964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
9, 33
               

               
Conread position:
               
757-945
               

               
Cow position:
               
chr29:6033897-6034090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
50, 24
               

               
Conread position:
               
762-1147
               

               
Cow position:
               
chr29:39329372-39329755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
45, 19
               

               
Conread position:
               
763-1133
               

               
Cow position:
               
chr29:11397702-11398070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
49, 92
               

               
Conread position:
               
764-925
               

               
Cow position:
               
chr29:19586969-19587124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
764-991
               

               
Cow position:
               
chr29:3590699-3590468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
43, 22
               

               
Conread position:
               
764-1008
               

               
Cow position:
               
chr29:22518911-22519141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
169, 43
               

               
Conread position:
               
764-1042
               

               
Cow position:
               
chr29:28840383-28840105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
43, 97
               

               
Conread position:
               
764-1165
               

               
Cow position:
               
chr29:30188121-30188522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
40, 117
               

               
Conread position:
               
764-1170
               

               
Cow position:
               
chr29:16196066-16195664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
17, 109
               

               
Conread position:
               
765-934
               

               
Cow position:
               
chr29:2623271-2623444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
42, 133
               

               
Conread position:
               
765-935
               

               
Cow position:
               
chr29:34600643-34600806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
38, 80
               

               
Conread position:
               
765-1147
               

               
Cow position:
               
chr29:25333233-25333624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
40, 71
               

               
Conread position:
               
766-987
               

               
Cow position:
               
chr29:17022390-17022157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
767-1008
               

               
Cow position:
               
chr29:11527563-11527803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
40, 126
               

               
Conread position:
               
767-1029
               

               
Cow position:
               
chr29:23155442-23155193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
39, 86
               

               
Conread position:
               
767-1171
               

               
Cow position:
               
chr29:22175897-22175506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
180, 40
               

               
Conread position:
               
768-1147
               

               
Cow position:
               
chr29:8926244-8926615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
185, 84
               

               
Conread position:
               
769-986
               

               
Cow position:
               
chr29:18579614-18579827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
38, 85
               

               
Conread position:
               
769-1090
               

               
Cow position:
               
chr29:2262776-2263098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
38, 77
               

               
Conread position:
               
770-945
               

               
Cow position:
               
chr29:30587216-30587041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
37, 88
               

               
Conread position:
               
770-950
               

               
Cow position:
               
chr29:8768105-8767926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
37, 75
               

               
Conread position:
               
770-989
               

               
Cow position:
               
chr29:19742677-19742459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
36, 88
               

               
Conread position:
               
770-1165
               

               
Cow position:
               
chr29:749687-750088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
35, 49
               

               
Conread position:
               
771-980
               

               
Cow position:
               
chr29:29940871-29940654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
36, 114
               

               
Conread position:
               
771-1064
               

               
Cow position:
               
chr29:23220287-23220577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
36, 19
               

               
Conread position:
               
771-1147
               

               
Cow position:
               
chr29:38581195-38580818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
33, 70
               

               
Conread position:
               
772-970
               

               
Cow position:
               
chr29:35070871-35071060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
174, 80
               

               
Conread position:
               
772-977
               

               
Cow position:
               
chr29:28949187-28948991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
35, 83
               

               
Conread position:
               
772-1162
               

               
Cow position:
               
chr29:12783758-12784133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
274, 17
               

               
Conread position:
               
772-1188
               

               
Cow position:
               
chr29:36210352-36209960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 88
               

               
Conread position:
               
773-1035
               

               
Cow position:
               
chr29:683257-683531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
33, 107
               

               
Conread position:
               
773-1069
               

               
Cow position:
               
chr29:8004722-8005003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
252, 30
               

               
Conread position:
               
773-1147
               

               
Cow position:
               
chr29:40298795-40299170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
34, 122
               

               
Conread position:
               
773-1159
               

               
Cow position:
               
chr29:10156065-10156475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
34, 180
               

               
Conread position:
               
773-1166
               

               
Cow position:
               
chr29:11562827-11562432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
34, 117
               

               
Conread position:
               
773-1171
               

               
Cow position:
               
chr29:19125531-19125159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
34, 87
               

               
Conread position:
               
774-1028
               

               
Cow position:
               
chr29:31200474-31200224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
32, 9
               

               
Conread position:
               
775-1143
               

               
Cow position:
               
chr29:42771852-42771494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
31, 105
               

               
Conread position:
               
775-1147
               

               
Cow position:
               
chr29:24252466-24252077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
25, 79
               

               
Conread position:
               
775-1166
               

               
Cow position:
               
chr29:26672700-26673084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 67
               

               
Conread position:
               
776-1027
               

               
Cow position:
               
chr29:23824992-23825243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
70, 60
               

               
Conread position:
               
776-1147
               

               
Cow position:
               
chr29:40097179-40096799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 79
               

               
Conread position:
               
777-1008
               

               
Cow position:
               
chr29:34688052-34687821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
9, 68
               

               
Conread position:
               
779-1008
               

               
Cow position:
               
chr29:16365657-16365903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
779-1042
               

               
Cow position:
               
chr29:40874223-40873960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
22, 52
               

               
Conread position:
               
779-1057
               

               
Cow position:
               
chr29:29324226-29324482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
28, 9
               

               
Conread position:
               
780-1147
               

               
Cow position:
               
chr29:6844416-6844795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
27, 113
               

               
Conread position:
               
782-1147
               

               
Cow position:
               
chr29:22714518-22714885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 73
               

               
Conread position:
               
785-1147
               

               
Cow position:
               
chr29:21000840-21000482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
71, 22
               

               
Conread position:
               
809-1162
               

               
Cow position:
               
chr29:32290799-32290424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
32, 21
               

               
Conread position:
               
827-1152
               

               
Cow position:
               
chr29:28775292-28775627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
19, 13
               

               
Conread position:
               
828-1106
               

               
Cow position:
               
chr29:847483-847762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
117, 37
               

               
Conread position:
               
833-1186
               

               
Cow position:
               
chr29:1022453-1022088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
114, 57
               

               
Conread position:
               
835-1165
               

               
Cow position:
               
chr29:6217389-6217731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
113, 47
               

               
Conread position:
               
838-1123
               

               
Cow position:
               
chr29:31944029-31943743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
8, 32
               

               
Conread position:
               
838-1146
               

               
Cow position:
               
chr29:23243723-23244040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 52
               

               
Conread position:
               
838-1164
               

               
Cow position:
               
chr29:1325598-1325266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
33, 43
               

               
Conread position:
               
839-1147
               

               
Cow position:
               
chr29:26653892-26654198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
108, 24
               

               
Conread position:
               
842-1157
               

               
Cow position:
               
chr29:10839093-10838777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
24, 49
               

               
Conread position:
               
842-1165
               

               
Cow position:
               
chr29:9709847-9709517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 52
               

               
Conread position:
               
843-1161
               

               
Cow position:
               
chr29:6293325-6293649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
44, 12
               

               
Conread position:
               
845-1080
               

               
Cow position:
               
chr29:21666239-21665996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
846-1165
               

               
Cow position:
               
chr29:25088892-25088572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
12, 46
               

               
Conread position:
               
853-1133
               

               
Cow position:
               
chr29:35084085-35084370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
94, 6
               

               
Conread position:
               
854-1026
               

               
Cow position:
               
chr29:29923434-29923604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
93, 9
               

               
Conread position:
               
854-1162
               

               
Cow position:
               
chr29:43099607-43099924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
99, 9
               

               
Conread position:
               
857-1074
               

               
Cow position:
               
chr29:20770480-20770258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
172, 33
               

               
Conread position:
               
859-1029
               

               
Cow position:
               
chr29:22734973-22735140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
859-1165
               

               
Cow position:
               
chr29:18085708-18085409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
88, 33
               

               
Conread position:
               
860-1054
               

               
Cow position:
               
chr29:30918682-30918487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
87, 23
               

               
Conread position:
               
861-1165
               

               
Cow position:
               
chr29:11434251-11433941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
87, 19
               

               
Conread position:
               
863-1141
               

               
Cow position:
               
chr29:29314516-29314810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
51, 17
               

               
Conread position:
               
863-1191
               

               
Cow position:
               
chr29:19339133-19338776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
84, 19
               

               
Conread position:
               
865-1005
               

               
Cow position:
               
chr29:19363838-19363700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
88, 23
               

               
Conread position:
               
865-1027
               

               
Cow position:
               
chr29:26540410-26540573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
86, 32
               

               
Conread position:
               
865-1027
               

               
Cow position:
               
chr29:39038137-39038302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
16, 29
               

               
Conread position:
               
865-1029
               

               
Cow position:
               
chr29:38978661-38978497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
86, 63
               

               
Conread position:
               
865-1094
               

               
Cow position:
               
chr29:26559112-26559347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
20, 84
               

               
Conread position:
               
865-1103
               

               
Cow position:
               
chr29:5063275-5063031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
82, 28
               

               
Conread position:
               
865-1145
               

               
Cow position:
               
chr29:32799581-32799871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
99, 81
               

               
Conread position:
               
865-1145
               

               
Cow position:
               
chr29:45005497-45005782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
13, 121
               

               
Conread position:
               
865-1147
               

               
Cow position:
               
chr29:9310732-9310467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
28, 82
               

               
Conread position:
               
865-1147
               

               
Cow position:
               
chr29:11915948-11915659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
145, 25
               

               
Conread position:
               
865-1147
               

               
Cow position:
               
chr29:16657823-16657527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
82, 15
               

               
Conread position:
               
865-1147
               

               
Cow position:
               
chr29:22778046-22778339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
12, 51
               

               
Conread position:
               
865-1147
               

               
Cow position:
               
chr29:36530996-36530706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
82, 27
               

               
Conread position:
               
865-1154
               

               
Cow position:
               
chr29:17297262-17296961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
82, 23
               

               
Conread position:
               
865-1162
               

               
Cow position:
               
chr29:24624377-24624069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
35, 23
               

               
Conread position:
               
865-1165
               

               
Cow position:
               
chr29:17110085-17109790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
218, 25
               

               
Conread position:
               
865-1176
               

               
Cow position:
               
chr29:12025348-12025661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
145, 25
               

               
Conread position:
               
865-1181
               

               
Cow position:
               
chr29:19949435-19949115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
137, 25
               

               
Conread position:
               
865-1181
               

               
Cow position:
               
chr29:24952817-24952490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
34, 17
               

               
Conread position:
               
866-1037
               

               
Cow position:
               
chr29:18012687-18012514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
81, 26
               

               
Conread position:
               
868-1008
               

               
Cow position:
               
chr29:9378762-9378623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
79, 23
               

               
Conread position:
               
868-1024
               

               
Cow position:
               
chr29:36781179-36781334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
79, 24
               

               
Conread position:
               
868-1115
               

               
Cow position:
               
chr29:34358853-34359109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
83, 22
               

               
Conread position:
               
868-1146
               

               
Cow position:
               
chr29:13639241-13639530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
85, 20
               

               
Conread position:
               
868-1147
               

               
Cow position:
               
chr29:40853055-40852775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
40, 20
               

               
Conread position:
               
868-1151
               

               
Cow position:
               
chr29:17222542-17222247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
36, 79
               

               
Conread position:
               
868-1161
               

               
Cow position:
               
chr29:12680283-12679982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
79, 29
               

               
Conread position:
               
868-1165
               

               
Cow position:
               
chr29:4520465-4520154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
10, 103
               

               
Conread position:
               
868-1165
               

               
Cow position:
               
chr29:8669482-8669185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
171, 59
               

               
Conread position:
               
868-1171
               

               
Cow position:
               
chr29:11705240-11704938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
168, 76
               

               
Conread position:
               
868-1181
               

               
Cow position:
               
chr29:31929112-31928784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
166, 22
               

               
Conread position:
               
868-1186
               

               
Cow position:
               
chr29:6286036-6286359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
83, 22
               

               
Conread position:
               
869-1077
               

               
Cow position:
               
chr29:41112757-41112966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
78, 21
               

               
Conread position:
               
869-1191
               

               
Cow position:
               
chr29:732743-732414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
78, 11
               

               
Conread position:
               
870-1017
               

               
Cow position:
               
chr29:22723724-22723578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
77, 21
               

               
Conread position:
               
870-1147
               

               
Cow position:
               
chr29:32963660-32963397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
174, 20
               

               
Conread position:
               
870-1147
               

               
Cow position:
               
chr29:34773612-34773895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
58, 22
               

               
Conread position:
               
870-1165
               

               
Cow position:
               
chr29:28979380-28979661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
82, 18
               

               
Conread position:
               
871-1026
               

               
Cow position:
               
chr29:22032515-22032673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
61, 131
               

               
Conread position:
               
871-1147
               

               
Cow position:
               
chr29:38582090-38581814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
76, 19
               

               
Conread position:
               
872-1161
               

               
Cow position:
               
chr29:26275729-26275441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
79, 20
               

               
Conread position:
               
876-1054
               

               
Cow position:
               
chr29:44139126-44139311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
75, 16
               

               
Conread position:
               
885-1162
               

               
Cow position:
               
chr29:2985002-2984706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
12, 62
               

               
Conread position:
               
886-1161
               

               
Cow position:
               
chr29:5098656-5098934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
61, 172
               

               
Conread position:
               
889-1131
               

               
Cow position:
               
chr29:44008678-44008927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
150, 57
               

               
Conread position:
               
889-1143
               

               
Cow position:
               
chr29:17154885-17154610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
60, 74
               

               
Conread position:
               
889-1165
               

               
Cow position:
               
chr29:10818343-10818618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
56, 84
               

               
Conread position:
               
889-1165
               

               
Cow position:
               
chr29:22162142-22162432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
891-1140
               

               
Cow position:
               
chr29:27589028-27588769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
55, 106
               

               
Conread position:
               
891-1159
               

               
Cow position:
               
chr29:22613532-22613251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
62, 24
               

               
Conread position:
               
892-999
               

               
Cow position:
               
chr29:15796589-15796481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
55, 71
               

               
Conread position:
               
892-999
               

               
Cow position:
               
chr29:15798056-15797947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
892-1008
               

               
Cow position:
               
chr29:36357230-36357115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
892-1009
               

               
Cow position:
               
chr29:7290880-7290761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
892-1009
               

               
Cow position:
               
chr29:29308467-29308587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
892-1026
               

               
Cow position:
               
chr29:742545-742681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
63, 55
               

               
Conread position:
               
892-1026
               

               
Cow position:
               
chr29:32197801-32197665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
892-1029
               

               
Cow position:
               
chr29:21285463-21285325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
64, 49
               

               
Conread position:
               
892-1031
               

               
Cow position:
               
chr29:17804638-17804500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
55, 49
               

               
Conread position:
               
892-1033
               

               
Cow position:
               
chr29:36952198-36952335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
892-1037
               

               
Cow position:
               
chr29:7624282-7624135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
892-1037
               

               
Cow position:
               
chr29:30548880-30548733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
892-1123
               

               
Cow position:
               
chr29:4002996-4002759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
892-1132
               

               
Cow position:
               
chr29:31594042-31594276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
146, 49
               

               
Conread position:
               
892-1145
               

               
Cow position:
               
chr29:25092210-25091953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
55, 78
               

               
Conread position:
               
892-1145
               

               
Cow position:
               
chr29:32210967-32211215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
189, 54
               

               
Conread position:
               
892-1145
               

               
Cow position:
               
chr29:41811486-41811741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
144, 55
               

               
Conread position:
               
892-1147
               

               
Cow position:
               
chr29:4480069-4480333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
55, 92
               

               
Conread position:
               
892-1147
               

               
Cow position:
               
chr29:5892949-5892689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
55, 194
               

               
Conread position:
               
892-1147
               

               
Cow position:
               
chr29:20903186-20903445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
54, 144
               

               
Conread position:
               
892-1148
               

               
Cow position:
               
chr29:29769247-29769513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
892-1152
               

               
Cow position:
               
chr29:28446152-28446422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
138, 43
               

               
Conread position:
               
892-1152
               

               
Cow position:
               
chr29:39111211-39111481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
55, 14
               

               
Conread position:
               
892-1162
               

               
Cow position:
               
chr29:26615613-26615903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
892-1162
               

               
Cow position:
               
chr29:28166118-28166391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
59, 55
               

               
Conread position:
               
892-1162
               

               
Cow position:
               
chr29:36217216-36216939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 55
               

               
Conread position:
               
892-1164
               

               
Cow position:
               
chr29:4874776-4875068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
55, 37
               

               
Conread position:
               
892-1164
               

               
Cow position:
               
chr29:40117675-40117397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
55, 48
               

               
Conread position:
               
892-1165
               

               
Cow position:
               
chr29:22028851-22029116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
100, 54
               

               
Conread position:
               
892-1165
               

               
Cow position:
               
chr29:35501549-35501830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 171
               

               
Conread position:
               
892-1166
               

               
Cow position:
               
chr29:28196905-28197190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
60, 15
               

               
Conread position:
               
892-1171
               

               
Cow position:
               
chr29:19762372-19762088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
140, 55
               

               
Conread position:
               
892-1173
               

               
Cow position:
               
chr29:463548-463842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
32, 18
               

               
Conread position:
               
892-1188
               

               
Cow position:
               
chr29:25737310-25737620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 56
               

               
Conread position:
               
893-1031
               

               
Cow position:
               
chr29:31981934-31981795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
54, 133
               

               
Conread position:
               
893-1085
               

               
Cow position:
               
chr29:27873704-27873508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
60, 53
               

               
Conread position:
               
893-1094
               

               
Cow position:
               
chr29:12625873-12626086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
62, 53
               

               
Conread position:
               
893-1105
               

               
Cow position:
               
chr29:6015229-6015004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
54, 91
               

               
Conread position:
               
893-1145
               

               
Cow position:
               
chr29:26416454-26416201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
89, 54
               

               
Conread position:
               
893-1145
               

               
Cow position:
               
chr29:42363913-42364173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
54, 14
               

               
Conread position:
               
893-1147
               

               
Cow position:
               
chr29:1229710-1229450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
62, 53
               

               
Conread position:
               
893-1147
               

               
Cow position:
               
chr29:2056164-2055899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
54, 248
               

               
Conread position:
               
893-1147
               

               
Cow position:
               
chr29:4120957-4120682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
893-1147
               

               
Cow position:
               
chr29:17607519-17607259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
55, 26
               

               
Conread position:
               
893-1147
               

               
Cow position:
               
chr29:19428763-19428497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
48, 25
               

               
Conread position:
               
893-1147
               

               
Cow position:
               
chr29:28195418-28195674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
52, 77
               

               
Conread position:
               
893-1147
               

               
Cow position:
               
chr29:35292196-35291929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
893-1147
               

               
Cow position:
               
chr29:43008981-43009242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
56, 119
               

               
Conread position:
               
893-1151
               

               
Cow position:
               
chr29:40763591-40763846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
53, 85
               

               
Conread position:
               
893-1153
               

               
Cow position:
               
chr29:21196546-21196820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
54, 232
               

               
Conread position:
               
893-1159
               

               
Cow position:
               
chr29:41530952-41530674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
54, 13
               

               
Conread position:
               
893-1160
               

               
Cow position:
               
chr29:13372766-13372487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
11, 16
               

               
Conread position:
               
893-1161
               

               
Cow position:
               
chr29:34359718-34359979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
53, 95
               

               
Conread position:
               
893-1165
               

               
Cow position:
               
chr29:109786-109528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
137, 11
               

               
Conread position:
               
893-1165
               

               
Cow position:
               
chr29:1933468-1933738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
10, 24
               

               
Conread position:
               
893-1165
               

               
Cow position:
               
chr29:29057278-29056999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
145, 53
               

               
Conread position:
               
893-1165
               

               
Cow position:
               
chr29:34297465-34297746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
11, 24
               

               
Conread position:
               
893-1171
               

               
Cow position:
               
chr29:4334821-4334543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
146, 60
               

               
Conread position:
               
893-1171
               

               
Cow position:
               
chr29:16609851-16609553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
62, 54
               

               
Conread position:
               
893-1181
               

               
Cow position:
               
chr29:7966349-7966051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
54, 134
               

               
Conread position:
               
893-1191
               

               
Cow position:
               
chr29:86909-87225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
54, 14
               

               
Conread position:
               
894-1125
               

               
Cow position:
               
chr29:27329994-27329753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
59, 16
               

               
Conread position:
               
894-1134
               

               
Cow position:
               
chr29:29176515-29176761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
53, 71
               

               
Conread position:
               
894-1147
               

               
Cow position:
               
chr29:4085411-4085158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
150, 52
               

               
Conread position:
               
894-1147
               

               
Cow position:
               
chr29:26778984-26778727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
53, 79
               

               
Conread position:
               
894-1147
               

               
Cow position:
               
chr29:43328746-43328479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
57, 53
               

               
Conread position:
               
894-1152
               

               
Cow position:
               
chr29:27826622-27826360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
148, 53
               

               
Conread position:
               
894-1161
               

               
Cow position:
               
chr29:7407802-7408061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
13, 20
               

               
Conread position:
               
894-1161
               

               
Cow position:
               
chr29:11053758-11054032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
71, 50
               

               
Conread position:
               
894-1162
               

               
Cow position:
               
chr29:29512038-29512318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
894-1164
               

               
Cow position:
               
chr29:37618408-37618129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
57, 53
               

               
Conread position:
               
894-1165
               

               
Cow position:
               
chr29:17409437-17409149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
53, 132
               

               
Conread position:
               
894-1165
               

               
Cow position:
               
chr29:24578965-24578698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
53, 137
               

               
Conread position:
               
894-1181
               

               
Cow position:
               
chr29:2744168-2744466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
53, 13
               

               
Conread position:
               
895-1008
               

               
Cow position:
               
chr29:5789129-5789015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
895-1162
               

               
Cow position:
               
chr29:23698079-23697800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
60, 50
               

               
Conread position:
               
895-1191
               

               
Cow position:
               
chr29:28868744-28868429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
60, 52
               

               
Conread position:
               
897-1145
               

               
Cow position:
               
chr29:1557030-1556773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
50, 111
               

               
Conread position:
               
897-1147
               

               
Cow position:
               
chr29:10058439-10058697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
59, 11
               

               
Conread position:
               
897-1152
               

               
Cow position:
               
chr29:32176773-32176519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
113, 10
               

               
Conread position:
               
897-1162
               

               
Cow position:
               
chr29:10235035-10235308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
50, 73
               

               
Conread position:
               
898-1147
               

               
Cow position:
               
chr29:5186395-5186656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
55, 49
               

               
Conread position:
               
898-1162
               

               
Cow position:
               
chr29:39567780-39567509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
48, 72
               

               
Conread position:
               
899-1184
               

               
Cow position:
               
chr29:23983858-23984160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
900-1163
               

               
Cow position:
               
chr29:35442366-35442641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
906-1162
               

               
Cow position:
               
chr29:41365199-41364931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
45, 41
               

               
Conread position:
               
911-1165
               

               
Cow position:
               
chr29:26330283-26330032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
133, 9
               

               
Conread position:
               
914-1147
               

               
Cow position:
               
chr29:44682022-44682258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
33, 105
               

               
Conread position:
               
915-1157
               

               
Cow position:
               
chr29:31674714-31674460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
32, 153
               

               
Conread position:
               
915-1165
               

               
Cow position:
               
chr29:4624918-4625177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
104, 32
               

               
Conread position:
               
915-1165
               

               
Cow position:
               
chr29:19253748-19254004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
33, 110
               

               
Conread position:
               
915-1181
               

               
Cow position:
               
chr29:3100186-3100456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
36, 103
               

               
Conread position:
               
921-1147
               

               
Cow position:
               
chr29:17037-17265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
102, 18
               

               
Conread position:
               
921-1148
               

               
Cow position:
               
chr29:40166319-40166083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
26, 140
               

               
Conread position:
               
921-1164
               

               
Cow position:
               
chr29:24103466-24103720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
28, 50
               

               
Conread position:
               
923-1171
               

               
Cow position:
               
chr29:29975111-29974856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
24, 110
               

               
Conread position:
               
928-1147
               

               
Cow position:
               
chr29:9718704-9718930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
102, 19
               

               
Conread position:
               
939-1152
               

               
Cow position:
               
chr29:10456508-10456725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
96, 9
               

               
Conread position:
               
950-1146
               

               
Cow position:
               
chr29:1124699-1124495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
950-1147
               

               
Cow position:
               
chr29:42849269-42849062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
63, 50
               

               
Conread position:
               
987-1165
               

               
Cow position:
               
chr29:26735036-26734852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
53, 116
               
Show alignments to all cow chromosomes.