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Cow genome map

           
Conread name:
           
Ss1.1-Pig4-TMW8060F06.3
        

               
Conread position:
               
750-996
               

               
Cow position:
               
chr5:34287987-34288224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
93, 30
               

               
Conread position:
               
751-987
               

               
Cow position:
               
chr5:56539510-56539286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
751-1152
               

               
Cow position:
               
chr5:36855478-36855067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
24, 37
               

               
Conread position:
               
752-1119
               

               
Cow position:
               
chr5:41294348-41293974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
116, 53
               

               
Conread position:
               
759-1026
               

               
Cow position:
               
chr5:45186872-45187120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
48, 97
               

               
Conread position:
               
761-876
               

               
Cow position:
               
chr5:2851893-2851777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
10, 79
               

               
Conread position:
               
762-957
               

               
Cow position:
               
chr5:50800015-50799813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
762-979
               

               
Cow position:
               
chr5:34116229-34116017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
45, 88
               

               
Conread position:
               
762-1002
               

               
Cow position:
               
chr5:55850140-55849905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
81, 49
               

               
Conread position:
               
763-1002
               

               
Cow position:
               
chr5:42622901-42623158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
43, 251
               

               
Conread position:
               
763-1007
               

               
Cow position:
               
chr5:27293609-27293869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
763-1147
               

               
Cow position:
               
chr5:25035015-25035376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 83
               

               
Conread position:
               
763-1168
               

               
Cow position:
               
chr5:58856387-58855946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
43, 272
               

               
Conread position:
               
764-1007
               

               
Cow position:
               
chr5:56428053-56428296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
29, 132
               

               
Conread position:
               
764-1008
               

               
Cow position:
               
chr5:26723708-26723462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
43, 130
               

               
Conread position:
               
764-1052
               

               
Cow position:
               
chr5:24069650-24069362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
42, 105
               

               
Conread position:
               
764-1123
               

               
Cow position:
               
chr5:23678443-23678814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
43, 130
               

               
Conread position:
               
764-1145
               

               
Cow position:
               
chr5:57737350-57736978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
183, 39
               

               
Conread position:
               
764-1153
               

               
Cow position:
               
chr5:34301183-34300776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 193
               

               
Conread position:
               
764-1162
               

               
Cow position:
               
chr5:25495113-25495497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 90
               

               
Conread position:
               
765-945
               

               
Cow position:
               
chr5:68594172-68593989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
40, 114
               

               
Conread position:
               
765-951
               

               
Cow position:
               
chr5:67583584-67583409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
41, 77
               

               
Conread position:
               
765-985
               

               
Cow position:
               
chr5:4956345-4956575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
40, 136
               

               
Conread position:
               
765-999
               

               
Cow position:
               
chr5:60595876-60596108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
42, 101
               

               
Conread position:
               
765-1130
               

               
Cow position:
               
chr5:64591845-64592211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
119, 38
               

               
Conread position:
               
765-1165
               

               
Cow position:
               
chr5:35969777-35969388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 90
               

               
Conread position:
               
766-980
               

               
Cow position:
               
chr5:26725957-26726176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
39, 115
               

               
Conread position:
               
766-994
               

               
Cow position:
               
chr5:38382540-38382771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
41, 130
               

               
Conread position:
               
766-1046
               

               
Cow position:
               
chr5:46540801-46541076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
24, 40
               

               
Conread position:
               
766-1147
               

               
Cow position:
               
chr5:28324596-28324218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
38, 143
               

               
Conread position:
               
766-1154
               

               
Cow position:
               
chr5:53855955-53855551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
181, 73
               

               
Conread position:
               
766-1165
               

               
Cow position:
               
chr5:59115629-59115226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
270, 40
               

               
Conread position:
               
766-1171
               

               
Cow position:
               
chr5:50942903-50943311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
69, 44
               

               
Conread position:
               
767-981
               

               
Cow position:
               
chr5:54067766-54068001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
40, 156
               

               
Conread position:
               
768-935
               

               
Cow position:
               
chr5:1090537-1090709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
768-1125
               

               
Cow position:
               
chr5:58447062-58446691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 123
               

               
Conread position:
               
768-1147
               

               
Cow position:
               
chr5:64321995-64321619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 72
               

               
Conread position:
               
768-1165
               

               
Cow position:
               
chr5:43992584-43992166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
37, 129
               

               
Conread position:
               
768-1166
               

               
Cow position:
               
chr5:69461590-69461179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 33
               

               
Conread position:
               
768-1179
               

               
Cow position:
               
chr5:58519161-58519572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
55, 38
               

               
Conread position:
               
768-1191
               

               
Cow position:
               
chr5:13537392-13536980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
37, 91
               

               
Conread position:
               
769-997
               

               
Cow position:
               
chr5:33256221-33256449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
36, 73
               

               
Conread position:
               
769-1027
               

               
Cow position:
               
chr5:44874455-44874188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
35, 155
               

               
Conread position:
               
769-1037
               

               
Cow position:
               
chr5:43408107-43408372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
37, 91
               

               
Conread position:
               
769-1063
               

               
Cow position:
               
chr5:52001372-52001668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
67, 22
               

               
Conread position:
               
769-1181
               

               
Cow position:
               
chr5:59631720-59631314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
38, 86
               

               
Conread position:
               
770-985
               

               
Cow position:
               
chr5:56485324-56485111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
34, 87
               

               
Conread position:
               
770-1026
               

               
Cow position:
               
chr5:61875786-61875541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
43, 90
               

               
Conread position:
               
770-1079
               

               
Cow position:
               
chr5:29912671-29912356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 73
               

               
Conread position:
               
771-941
               

               
Cow position:
               
chr5:5028987-5028812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
37, 112
               

               
Conread position:
               
771-1112
               

               
Cow position:
               
chr5:55019554-55019194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
58, 36
               

               
Conread position:
               
771-1147
               

               
Cow position:
               
chr5:63987186-63987585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
36, 182
               

               
Conread position:
               
772-941
               

               
Cow position:
               
chr5:20551327-20551497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
20, 113
               

               
Conread position:
               
772-994
               

               
Cow position:
               
chr5:29149132-29148919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
772-994
               

               
Cow position:
               
chr5:57744680-57744896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
35, 60
               

               
Conread position:
               
772-1037
               

               
Cow position:
               
chr5:49341805-49342065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
35, 99
               

               
Conread position:
               
772-1065
               

               
Cow position:
               
chr5:24136964-24136664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
35, 114
               

               
Conread position:
               
772-1147
               

               
Cow position:
               
chr5:51935450-51935052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
772-1165
               

               
Cow position:
               
chr5:54311586-54311178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 121
               

               
Conread position:
               
773-1025
               

               
Cow position:
               
chr5:51489987-51490248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
16, 183
               

               
Conread position:
               
773-1147
               

               
Cow position:
               
chr5:52164944-52165313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
32, 71
               

               
Conread position:
               
773-1165
               

               
Cow position:
               
chr5:18574411-18574016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
32, 82
               

               
Conread position:
               
774-1008
               

               
Cow position:
               
chr5:58555381-58555151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
173, 78
               

               
Conread position:
               
774-1147
               

               
Cow position:
               
chr5:4166893-4166528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 119
               

               
Conread position:
               
774-1181
               

               
Cow position:
               
chr5:37646296-37646718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
16, 22
               

               
Conread position:
               
776-995
               

               
Cow position:
               
chr5:38647882-38647667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
31, 79
               

               
Conread position:
               
776-1143
               

               
Cow position:
               
chr5:44726088-44726456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 116
               

               
Conread position:
               
776-1147
               

               
Cow position:
               
chr5:5110833-5111207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 64
               

               
Conread position:
               
776-1147
               

               
Cow position:
               
chr5:50822028-50821648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 19
               

               
Conread position:
               
777-942
               

               
Cow position:
               
chr5:29831292-29831461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
30, 105
               

               
Conread position:
               
777-1165
               

               
Cow position:
               
chr5:59325594-59325983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
30, 118
               

               
Conread position:
               
779-951
               

               
Cow position:
               
chr5:14354315-14354149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
779-977
               

               
Cow position:
               
chr5:46322562-46322758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
78, 111
               

               
Conread position:
               
779-1011
               

               
Cow position:
               
chr5:35647599-35647354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
779-1165
               

               
Cow position:
               
chr5:74858810-74858419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
38, 83
               

               
Conread position:
               
780-1132
               

               
Cow position:
               
chr5:49440630-49440991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
24, 115
               

               
Conread position:
               
780-1165
               

               
Cow position:
               
chr5:39447303-39447685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
27, 70
               

               
Conread position:
               
781-1105
               

               
Cow position:
               
chr5:49685035-49685359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
24, 87
               

               
Conread position:
               
781-1147
               

               
Cow position:
               
chr5:31640667-31640297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 99
               

               
Conread position:
               
783-1145
               

               
Cow position:
               
chr5:54767664-54768042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 219
               

               
Conread position:
               
783-1167
               

               
Cow position:
               
chr5:60598968-60599331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
23, 69
               

               
Conread position:
               
788-1059
               

               
Cow position:
               
chr5:56338777-56339063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
55, 19
               

               
Conread position:
               
788-1152
               

               
Cow position:
               
chr5:23168587-23168964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 96
               

               
Conread position:
               
788-1161
               

               
Cow position:
               
chr5:41545653-41546036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 44
               

               
Conread position:
               
803-1009
               

               
Cow position:
               
chr5:56362007-56361809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
821-1116
               

               
Cow position:
               
chr5:12557084-12557395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
24, 11
               

               
Conread position:
               
824-1164
               

               
Cow position:
               
chr5:27155205-27154875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
11, 39
               

               
Conread position:
               
826-1026
               

               
Cow position:
               
chr5:57489758-57489947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
827-1132
               

               
Cow position:
               
chr5:26476823-26477131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
7, 64
               

               
Conread position:
               
833-1132
               

               
Cow position:
               
chr5:44796549-44796849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
120, 13
               

               
Conread position:
               
833-1161
               

               
Cow position:
               
chr5:65753047-65752706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
114, 13
               

               
Conread position:
               
833-1165
               

               
Cow position:
               
chr5:4280631-4280309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
114, 13
               

               
Conread position:
               
838-1000
               

               
Cow position:
               
chr5:35190295-35190132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
8, 54
               

               
Conread position:
               
838-1073
               

               
Cow position:
               
chr5:40242227-40241985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
174, 54
               

               
Conread position:
               
838-1144
               

               
Cow position:
               
chr5:63426821-63427137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
31, 44
               

               
Conread position:
               
838-1145
               

               
Cow position:
               
chr5:64139746-64139434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 182
               

               
Conread position:
               
838-1180
               

               
Cow position:
               
chr5:45273322-45273669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
109, 31
               

               
Conread position:
               
839-1169
               

               
Cow position:
               
chr5:66339257-66338923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
7, 27
               

               
Conread position:
               
840-1165
               

               
Cow position:
               
chr5:43929555-43929888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 50
               

               
Conread position:
               
843-1147
               

               
Cow position:
               
chr5:54060456-54060143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
104, 37
               

               
Conread position:
               
844-987
               

               
Cow position:
               
chr5:70353804-70353949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
59, 36
               

               
Conread position:
               
844-1147
               

               
Cow position:
               
chr5:9089851-9090154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
103, 46
               

               
Conread position:
               
844-1191
               

               
Cow position:
               
chr5:47547546-47547894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
103, 86
               

               
Conread position:
               
845-1027
               

               
Cow position:
               
chr5:51298534-51298718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
24, 48
               

               
Conread position:
               
845-1126
               

               
Cow position:
               
chr5:33560557-33560847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
24, 53
               

               
Conread position:
               
845-1152
               

               
Cow position:
               
chr5:69337995-69337692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
106, 17
               

               
Conread position:
               
845-1171
               

               
Cow position:
               
chr5:47601989-47601659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 46
               

               
Conread position:
               
846-1152
               

               
Cow position:
               
chr5:61810946-61810647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
194, 45
               

               
Conread position:
               
850-1136
               

               
Cow position:
               
chr5:32338795-32339087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
97, 39
               

               
Conread position:
               
852-1147
               

               
Cow position:
               
chr5:56071028-56070722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 11
               

               
Conread position:
               
852-1168
               

               
Cow position:
               
chr5:458657-458327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
98, 38
               

               
Conread position:
               
853-1165
               

               
Cow position:
               
chr5:60715199-60715509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
34, 8
               

               
Conread position:
               
854-1165
               

               
Cow position:
               
chr5:34528715-34528407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
27, 9
               

               
Conread position:
               
857-1166
               

               
Cow position:
               
chr5:44993885-44994193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
174, 30
               

               
Conread position:
               
858-1165
               

               
Cow position:
               
chr5:11668022-11668333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
97, 31
               

               
Conread position:
               
859-1165
               

               
Cow position:
               
chr5:57626953-57626652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
149, 112
               

               
Conread position:
               
860-1171
               

               
Cow position:
               
chr5:57575939-57575608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
861-1147
               

               
Cow position:
               
chr5:19278549-19278834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
86, 31
               

               
Conread position:
               
861-1147
               

               
Cow position:
               
chr5:55068866-55068576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
86, 29
               

               
Conread position:
               
861-1171
               

               
Cow position:
               
chr5:35685097-35684777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 31
               

               
Conread position:
               
863-981
               

               
Cow position:
               
chr5:23207020-23207136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
88, 23
               

               
Conread position:
               
863-1008
               

               
Cow position:
               
chr5:55942221-55942365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
84, 27
               

               
Conread position:
               
863-1152
               

               
Cow position:
               
chr5:50600206-50599918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 27
               

               
Conread position:
               
863-1165
               

               
Cow position:
               
chr5:1247425-1247122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
31, 85
               

               
Conread position:
               
864-1008
               

               
Cow position:
               
chr5:9369112-9369257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
83, 16
               

               
Conread position:
               
865-991
               

               
Cow position:
               
chr5:8736121-8736248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
865-1004
               

               
Cow position:
               
chr5:54312759-54312619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
16, 28
               

               
Conread position:
               
865-1007
               

               
Cow position:
               
chr5:26147748-26147606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
82, 29
               

               
Conread position:
               
865-1008
               

               
Cow position:
               
chr5:2240835-2240975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
81, 25
               

               
Conread position:
               
865-1011
               

               
Cow position:
               
chr5:38169053-38168905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
50, 17
               

               
Conread position:
               
865-1017
               

               
Cow position:
               
chr5:26548983-26549135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
88, 27
               

               
Conread position:
               
865-1020
               

               
Cow position:
               
chr5:17604976-17605132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
45, 25
               

               
Conread position:
               
865-1026
               

               
Cow position:
               
chr5:22795372-22795213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
865-1060
               

               
Cow position:
               
chr5:69099877-69099674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
61, 27
               

               
Conread position:
               
865-1069
               

               
Cow position:
               
chr5:20288104-20288314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
81, 200
               

               
Conread position:
               
865-1076
               

               
Cow position:
               
chr5:63627377-63627585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
173, 25
               

               
Conread position:
               
865-1085
               

               
Cow position:
               
chr5:59626814-59627043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
81, 27
               

               
Conread position:
               
865-1094
               

               
Cow position:
               
chr5:17554877-17555111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
82, 23
               

               
Conread position:
               
865-1129
               

               
Cow position:
               
chr5:14920771-14921045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
88, 81
               

               
Conread position:
               
865-1146
               

               
Cow position:
               
chr5:22667228-22666960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
82, 27
               

               
Conread position:
               
865-1146
               

               
Cow position:
               
chr5:30629001-30629291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
79, 23
               

               
Conread position:
               
865-1147
               

               
Cow position:
               
chr5:30276846-30276563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 25
               

               
Conread position:
               
865-1147
               

               
Cow position:
               
chr5:70951734-70952010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
162, 23
               

               
Conread position:
               
865-1148
               

               
Cow position:
               
chr5:66582122-66581828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
39, 44
               

               
Conread position:
               
865-1158
               

               
Cow position:
               
chr5:11539900-11540195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
82, 27
               

               
Conread position:
               
865-1158
               

               
Cow position:
               
chr5:17086862-17087176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
15, 27
               

               
Conread position:
               
865-1159
               

               
Cow position:
               
chr5:53710533-53710842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
82, 26
               

               
Conread position:
               
865-1161
               

               
Cow position:
               
chr5:12351655-12351940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
82, 23
               

               
Conread position:
               
865-1161
               

               
Cow position:
               
chr5:16205999-16206305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
88, 25
               

               
Conread position:
               
865-1162
               

               
Cow position:
               
chr5:45397725-45397427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
158, 25
               

               
Conread position:
               
865-1165
               

               
Cow position:
               
chr5:20779241-20779536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
90, 15
               

               
Conread position:
               
865-1165
               

               
Cow position:
               
chr5:46509706-46510021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
31, 15
               

               
Conread position:
               
865-1171
               

               
Cow position:
               
chr5:45845532-45845853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
56, 25
               

               
Conread position:
               
865-1182
               

               
Cow position:
               
chr5:35826757-35826437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 23
               

               
Conread position:
               
865-1190
               

               
Cow position:
               
chr5:24996065-24996401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 27
               

               
Conread position:
               
865-1191
               

               
Cow position:
               
chr5:65941095-65941430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 15
               

               
Conread position:
               
866-1157
               

               
Cow position:
               
chr5:59717897-59717605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
40, 10
               

               
Conread position:
               
866-1171
               

               
Cow position:
               
chr5:67212515-67212221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
81, 24
               

               
Conread position:
               
867-1122
               

               
Cow position:
               
chr5:35126209-35125945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
80, 25
               

               
Conread position:
               
867-1161
               

               
Cow position:
               
chr5:44053900-44054183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
210, 25
               

               
Conread position:
               
867-1170
               

               
Cow position:
               
chr5:42050707-42050387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
80, 25
               

               
Conread position:
               
868-1004
               

               
Cow position:
               
chr5:39035931-39035798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
79, 23
               

               
Conread position:
               
868-1006
               

               
Cow position:
               
chr5:26167575-26167437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
79, 24
               

               
Conread position:
               
868-1030
               

               
Cow position:
               
chr5:60523886-60523725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
8, 23
               

               
Conread position:
               
868-1035
               

               
Cow position:
               
chr5:57230184-57230354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
79, 23
               

               
Conread position:
               
868-1037
               

               
Cow position:
               
chr5:59627253-59627089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
79, 22
               

               
Conread position:
               
868-1038
               

               
Cow position:
               
chr5:17602052-17602214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
81, 22
               

               
Conread position:
               
868-1111
               

               
Cow position:
               
chr5:62378933-62378693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
176, 22
               

               
Conread position:
               
868-1117
               

               
Cow position:
               
chr5:36038845-36039108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
75, 98
               

               
Conread position:
               
868-1123
               

               
Cow position:
               
chr5:60183959-60183691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
79, 24
               

               
Conread position:
               
868-1143
               

               
Cow position:
               
chr5:7057244-7057537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
868-1147
               

               
Cow position:
               
chr5:991627-991332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
69, 19
               

               
Conread position:
               
868-1152
               

               
Cow position:
               
chr5:12673321-12673599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
25, 79
               

               
Conread position:
               
868-1165
               

               
Cow position:
               
chr5:21829020-21828710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 20
               

               
Conread position:
               
868-1165
               

               
Cow position:
               
chr5:57074177-57074489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
79, 24
               

               
Conread position:
               
868-1170
               

               
Cow position:
               
chr5:55232660-55232951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
43, 22
               

               
Conread position:
               
868-1181
               

               
Cow position:
               
chr5:20128207-20127886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
79, 25
               

               
Conread position:
               
869-1026
               

               
Cow position:
               
chr5:12434695-12434540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
78, 21
               

               
Conread position:
               
869-1059
               

               
Cow position:
               
chr5:72006337-72006536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
78, 23
               

               
Conread position:
               
869-1126
               

               
Cow position:
               
chr5:45574772-45574502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
78, 22
               

               
Conread position:
               
869-1146
               

               
Cow position:
               
chr5:63865958-63865662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
59, 23
               

               
Conread position:
               
869-1147
               

               
Cow position:
               
chr5:16893620-16893906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
77, 19
               

               
Conread position:
               
869-1147
               

               
Cow position:
               
chr5:53835871-53835580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
76, 247
               

               
Conread position:
               
869-1162
               

               
Cow position:
               
chr5:40109644-40109347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
78, 21
               

               
Conread position:
               
869-1171
               

               
Cow position:
               
chr5:25230865-25231165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
145, 23
               

               
Conread position:
               
869-1171
               

               
Cow position:
               
chr5:26467780-26467462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
89, 19
               

               
Conread position:
               
870-1143
               

               
Cow position:
               
chr5:66366664-66366388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
36, 87
               

               
Conread position:
               
870-1147
               

               
Cow position:
               
chr5:14314679-14314391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 8
               

               
Conread position:
               
870-1162
               

               
Cow position:
               
chr5:35208412-35208115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
158, 27
               

               
Conread position:
               
870-1162
               

               
Cow position:
               
chr5:65136414-65136133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
94, 18
               

               
Conread position:
               
870-1165
               

               
Cow position:
               
chr5:4031835-4032149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
77, 20
               

               
Conread position:
               
870-1165
               

               
Cow position:
               
chr5:9893969-9894281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
78, 274
               

               
Conread position:
               
870-1171
               

               
Cow position:
               
chr5:7044549-7044868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
871-1036
               

               
Cow position:
               
chr5:56334360-56334522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
871-1147
               

               
Cow position:
               
chr5:44446715-44447002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 19
               

               
Conread position:
               
872-1080
               

               
Cow position:
               
chr5:63150019-63150231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
75, 20
               

               
Conread position:
               
872-1162
               

               
Cow position:
               
chr5:56014881-56014583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
75, 22
               

               
Conread position:
               
873-1168
               

               
Cow position:
               
chr5:41009850-41010151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
38, 7
               

               
Conread position:
               
874-1143
               

               
Cow position:
               
chr5:12322658-12322931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
162, 16
               

               
Conread position:
               
874-1165
               

               
Cow position:
               
chr5:66257785-66257487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 18
               

               
Conread position:
               
878-1037
               

               
Cow position:
               
chr5:60189137-60188976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
69, 14
               

               
Conread position:
               
882-1008
               

               
Cow position:
               
chr5:75228057-75228185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
73, 64
               

               
Conread position:
               
882-1165
               

               
Cow position:
               
chr5:56467831-56467550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
65, 21
               

               
Conread position:
               
885-992
               

               
Cow position:
               
chr5:35833548-35833439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
885-1171
               

               
Cow position:
               
chr5:45804199-45803903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 38
               

               
Conread position:
               
886-1126
               

               
Cow position:
               
chr5:27171855-27172093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
61, 100
               

               
Conread position:
               
886-1136
               

               
Cow position:
               
chr5:42670726-42670978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
64, 145
               

               
Conread position:
               
888-1080
               

               
Cow position:
               
chr5:1461225-1461023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
888-1165
               

               
Cow position:
               
chr5:56518086-56518364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
65, 59
               

               
Conread position:
               
889-1008
               

               
Cow position:
               
chr5:43844528-43844649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
889-1054
               

               
Cow position:
               
chr5:61102851-61102676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
58, 104
               

               
Conread position:
               
889-1146
               

               
Cow position:
               
chr5:6286298-6286557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 131
               

               
Conread position:
               
889-1147
               

               
Cow position:
               
chr5:15426673-15426395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
58, 106
               

               
Conread position:
               
889-1149
               

               
Cow position:
               
chr5:8024065-8024331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
118, 58
               

               
Conread position:
               
889-1153
               

               
Cow position:
               
chr5:44847886-44848165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
58, 260
               

               
Conread position:
               
889-1161
               

               
Cow position:
               
chr5:29903388-29903673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
889-1162
               

               
Cow position:
               
chr5:15721939-15722207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
58, 154
               

               
Conread position:
               
889-1165
               

               
Cow position:
               
chr5:30303026-30302741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
124, 58
               

               
Conread position:
               
890-999
               

               
Cow position:
               
chr5:37842145-37842256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
890-1008
               

               
Cow position:
               
chr5:65679839-65679956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
890-1171
               

               
Cow position:
               
chr5:43457397-43457676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
57, 82
               

               
Conread position:
               
891-1142
               

               
Cow position:
               
chr5:28927461-28927718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
92, 55
               

               
Conread position:
               
891-1161
               

               
Cow position:
               
chr5:57934975-57935258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
892-1011
               

               
Cow position:
               
chr5:9233856-9233978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
892-1011
               

               
Cow position:
               
chr5:60948264-60948144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
61, 54
               

               
Conread position:
               
892-1021
               

               
Cow position:
               
chr5:5847714-5847844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
55, 96
               

               
Conread position:
               
892-1025
               

               
Cow position:
               
chr5:50824724-50824589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
892-1027
               

               
Cow position:
               
chr5:57686605-57686742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
892-1029
               

               
Cow position:
               
chr5:69383386-69383248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
55, 9
               

               
Conread position:
               
892-1034
               

               
Cow position:
               
chr5:17104982-17104839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
127, 54
               

               
Conread position:
               
892-1037
               

               
Cow position:
               
chr5:35982605-35982753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
892-1079
               

               
Cow position:
               
chr5:66551764-66551962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
892-1105
               

               
Cow position:
               
chr5:35976642-35976429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
144, 55
               

               
Conread position:
               
892-1116
               

               
Cow position:
               
chr5:54375370-54375610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
892-1125
               

               
Cow position:
               
chr5:60016297-60016055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
137, 57
               

               
Conread position:
               
892-1128
               

               
Cow position:
               
chr5:7698132-7697890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
39, 43
               

               
Conread position:
               
892-1145
               

               
Cow position:
               
chr5:56028409-56028659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
54, 88
               

               
Conread position:
               
892-1146
               

               
Cow position:
               
chr5:64026887-64027141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 142
               

               
Conread position:
               
892-1147
               

               
Cow position:
               
chr5:7193548-7193297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
55, 17
               

               
Conread position:
               
892-1147
               

               
Cow position:
               
chr5:7755439-7755696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
55, 9
               

               
Conread position:
               
892-1147
               

               
Cow position:
               
chr5:11229541-11229803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
38, 85
               

               
Conread position:
               
892-1147
               

               
Cow position:
               
chr5:14629673-14629947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
892-1147
               

               
Cow position:
               
chr5:15364014-15363760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
54, 149
               

               
Conread position:
               
892-1147
               

               
Cow position:
               
chr5:20783754-20783490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
55, 92
               

               
Conread position:
               
892-1147
               

               
Cow position:
               
chr5:26377536-26377801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
58, 24
               

               
Conread position:
               
892-1147
               

               
Cow position:
               
chr5:28302611-28302874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
55, 192
               

               
Conread position:
               
892-1147
               

               
Cow position:
               
chr5:34562149-34561878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
892-1147
               

               
Cow position:
               
chr5:68718999-68718743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
137, 54
               

               
Conread position:
               
892-1152
               

               
Cow position:
               
chr5:4710020-4710284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
55, 73
               

               
Conread position:
               
892-1152
               

               
Cow position:
               
chr5:37814758-37814485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
55, 250
               

               
Conread position:
               
892-1152
               

               
Cow position:
               
chr5:72951976-72951700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
64, 55
               

               
Conread position:
               
892-1154
               

               
Cow position:
               
chr5:74643546-74643812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
61, 55
               

               
Conread position:
               
892-1161
               

               
Cow position:
               
chr5:56877614-56877338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
28, 74
               

               
Conread position:
               
892-1162
               

               
Cow position:
               
chr5:72895818-72895541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
55, 173
               

               
Conread position:
               
892-1164
               

               
Cow position:
               
chr5:22242633-22242930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
55, 70
               

               
Conread position:
               
892-1165
               

               
Cow position:
               
chr5:6045428-6045133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
892-1165
               

               
Cow position:
               
chr5:21617590-21617305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
892-1165
               

               
Cow position:
               
chr5:27306436-27306164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
63, 52
               

               
Conread position:
               
892-1165
               

               
Cow position:
               
chr5:30253873-30253587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
892-1165
               

               
Cow position:
               
chr5:41165220-41164939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
61, 55
               

               
Conread position:
               
892-1165
               

               
Cow position:
               
chr5:63992040-63992317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
55, 177
               

               
Conread position:
               
892-1168
               

               
Cow position:
               
chr5:65967599-65967886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
892-1171
               

               
Cow position:
               
chr5:16025336-16025618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
53, 69
               

               
Conread position:
               
892-1171
               

               
Cow position:
               
chr5:67244050-67243768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
49, 79
               

               
Conread position:
               
892-1180
               

               
Cow position:
               
chr5:38833253-38832953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
55, 81
               

               
Conread position:
               
893-1008
               

               
Cow position:
               
chr5:4267801-4267684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
893-1024
               

               
Cow position:
               
chr5:21223454-21223322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
54, 109
               

               
Conread position:
               
893-1035
               

               
Cow position:
               
chr5:55795835-55795980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
893-1036
               

               
Cow position:
               
chr5:49501693-49501839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
893-1094
               

               
Cow position:
               
chr5:47323593-47323385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
54, 95
               

               
Conread position:
               
893-1143
               

               
Cow position:
               
chr5:39258636-39258395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
149, 53
               

               
Conread position:
               
893-1146
               

               
Cow position:
               
chr5:55966752-55967012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 10
               

               
Conread position:
               
893-1147
               

               
Cow position:
               
chr5:8820882-8821142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
54, 74
               

               
Conread position:
               
893-1147
               

               
Cow position:
               
chr5:18289253-18288995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
146, 53
               

               
Conread position:
               
893-1147
               

               
Cow position:
               
chr5:21039852-21040110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
135, 50
               

               
Conread position:
               
893-1147
               

               
Cow position:
               
chr5:47696319-47696573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
116, 53
               

               
Conread position:
               
893-1147
               

               
Cow position:
               
chr5:73167880-73168132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
60, 53
               

               
Conread position:
               
893-1147
               

               
Cow position:
               
chr5:74580920-74580662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
56, 119
               

               
Conread position:
               
893-1152
               

               
Cow position:
               
chr5:44028176-44028440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
56, 70
               

               
Conread position:
               
893-1153
               

               
Cow position:
               
chr5:20422062-20422325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
136, 53
               

               
Conread position:
               
893-1162
               

               
Cow position:
               
chr5:36868866-36868594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
54, 39
               

               
Conread position:
               
893-1162
               

               
Cow position:
               
chr5:56680387-56680099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
54, 270
               

               
Conread position:
               
893-1164
               

               
Cow position:
               
chr5:65932812-65933085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
56, 116
               

               
Conread position:
               
893-1165
               

               
Cow position:
               
chr5:4218988-4218723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
129, 32
               

               
Conread position:
               
893-1165
               

               
Cow position:
               
chr5:5855989-5855725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
54, 157
               

               
Conread position:
               
893-1165
               

               
Cow position:
               
chr5:6683236-6683505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
153, 54
               

               
Conread position:
               
893-1165
               

               
Cow position:
               
chr5:7723796-7723516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
53, 188
               

               
Conread position:
               
893-1165
               

               
Cow position:
               
chr5:29828177-29827899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
60, 23
               

               
Conread position:
               
893-1165
               

               
Cow position:
               
chr5:51053518-51053802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
54, 107
               

               
Conread position:
               
893-1165
               

               
Cow position:
               
chr5:62142807-62142516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
60, 53
               

               
Conread position:
               
893-1165
               

               
Cow position:
               
chr5:64758636-64758921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
53, 243
               

               
Conread position:
               
893-1169
               

               
Cow position:
               
chr5:66972560-66972268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
54, 135
               

               
Conread position:
               
893-1171
               

               
Cow position:
               
chr5:5257157-5257454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
54, 232
               

               
Conread position:
               
893-1171
               

               
Cow position:
               
chr5:26262548-26262833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
116, 53
               

               
Conread position:
               
893-1171
               

               
Cow position:
               
chr5:56524305-56524014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
60, 54
               

               
Conread position:
               
893-1172
               

               
Cow position:
               
chr5:4221109-4220822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
59, 53
               

               
Conread position:
               
893-1172
               

               
Cow position:
               
chr5:34050249-34049951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
893-1173
               

               
Cow position:
               
chr5:35246979-35247275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
54, 177
               

               
Conread position:
               
893-1175
               

               
Cow position:
               
chr5:28224583-28224287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
54, 46
               

               
Conread position:
               
893-1181
               

               
Cow position:
               
chr5:6503750-6504047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
54, 167
               

               
Conread position:
               
893-1181
               

               
Cow position:
               
chr5:14550453-14550753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
60, 54
               

               
Conread position:
               
893-1191
               

               
Cow position:
               
chr5:6528816-6528504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
33, 304
               

               
Conread position:
               
893-1191
               

               
Cow position:
               
chr5:52000349-52000042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
136, 46
               

               
Conread position:
               
894-1005
               

               
Cow position:
               
chr5:26253043-26253156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
894-1009
               

               
Cow position:
               
chr5:45574235-45574352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
59, 52
               

               
Conread position:
               
894-1037
               

               
Cow position:
               
chr5:56517234-56517088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
53, 65
               

               
Conread position:
               
894-1067
               

               
Cow position:
               
chr5:67118550-67118367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
894-1081
               

               
Cow position:
               
chr5:69636354-69636170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
53, 125
               

               
Conread position:
               
894-1094
               

               
Cow position:
               
chr5:43403033-43402820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
53, 9
               

               
Conread position:
               
894-1141
               

               
Cow position:
               
chr5:49474415-49474670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
57, 51
               

               
Conread position:
               
894-1143
               

               
Cow position:
               
chr5:31561665-31561402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
13, 25
               

               
Conread position:
               
894-1144
               

               
Cow position:
               
chr5:35763391-35763147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
144, 19
               

               
Conread position:
               
894-1145
               

               
Cow position:
               
chr5:46512639-46512895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
894-1146
               

               
Cow position:
               
chr5:30949785-30950049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
53, 171
               

               
Conread position:
               
894-1147
               

               
Cow position:
               
chr5:56317419-56317164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
134, 53
               

               
Conread position:
               
894-1147
               

               
Cow position:
               
chr5:74016070-74015806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
59, 53
               

               
Conread position:
               
894-1148
               

               
Cow position:
               
chr5:39875254-39874988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
61, 53
               

               
Conread position:
               
894-1161
               

               
Cow position:
               
chr5:15598108-15598379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
53, 40
               

               
Conread position:
               
894-1165
               

               
Cow position:
               
chr5:19813090-19813369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
59, 53
               

               
Conread position:
               
894-1177
               

               
Cow position:
               
chr5:65776254-65776549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
13, 132
               

               
Conread position:
               
894-1181
               

               
Cow position:
               
chr5:64175996-64176288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
59, 52
               

               
Conread position:
               
894-1191
               

               
Cow position:
               
chr5:34625090-34624792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
53, 199
               

               
Conread position:
               
895-1147
               

               
Cow position:
               
chr5:2309429-2309694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
51, 8
               

               
Conread position:
               
895-1162
               

               
Cow position:
               
chr5:50533259-50533534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
135, 51
               

               
Conread position:
               
895-1171
               

               
Cow position:
               
chr5:64523734-64524038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
896-1016
               

               
Cow position:
               
chr5:12169641-12169762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
51, 95
               

               
Conread position:
               
896-1112
               

               
Cow position:
               
chr5:56548699-56548479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
51, 71
               

               
Conread position:
               
897-1033
               

               
Cow position:
               
chr5:9170456-9170593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
897-1037
               

               
Cow position:
               
chr5:30233034-30232891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
50, 25
               

               
Conread position:
               
897-1078
               

               
Cow position:
               
chr5:26150294-26150483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
50, 68
               

               
Conread position:
               
897-1145
               

               
Cow position:
               
chr5:30845237-30844981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
116, 50
               

               
Conread position:
               
897-1147
               

               
Cow position:
               
chr5:3582687-3582441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
50, 162
               

               
Conread position:
               
897-1147
               

               
Cow position:
               
chr5:57101654-57101910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
37, 26
               

               
Conread position:
               
897-1162
               

               
Cow position:
               
chr5:61726091-61725823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
54, 13
               

               
Conread position:
               
897-1165
               

               
Cow position:
               
chr5:22643105-22643372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
199, 49
               

               
Conread position:
               
897-1165
               

               
Cow position:
               
chr5:33538001-33537736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
32, 81
               

               
Conread position:
               
897-1165
               

               
Cow position:
               
chr5:42744907-42744638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
120, 33
               

               
Conread position:
               
897-1165
               

               
Cow position:
               
chr5:48009732-48010001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
50, 102
               

               
Conread position:
               
897-1165
               

               
Cow position:
               
chr5:62172539-62172264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
897-1181
               

               
Cow position:
               
chr5:47316847-47317137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
50, 245
               

               
Conread position:
               
899-1147
               

               
Cow position:
               
chr5:27419604-27419855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
46, 201
               

               
Conread position:
               
899-1214
               

               
Cow position:
               
chr5:16214812-16214485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
57, 48
               

               
Conread position:
               
900-1162
               

               
Cow position:
               
chr5:24349231-24348960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
47, 257
               

               
Conread position:
               
901-1165
               

               
Cow position:
               
chr5:41129865-41129611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
54, 46
               

               
Conread position:
               
902-1145
               

               
Cow position:
               
chr5:65588821-65588571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
51, 45
               

               
Conread position:
               
903-1165
               

               
Cow position:
               
chr5:58793486-58793769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
905-1147
               

               
Cow position:
               
chr5:32696704-32696954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
48, 34
               

               
Conread position:
               
906-1188
               

               
Cow position:
               
chr5:20407560-20407844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
41, 103
               

               
Conread position:
               
911-1143
               

               
Cow position:
               
chr5:1396713-1396485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
36, 100
               

               
Conread position:
               
911-1146
               

               
Cow position:
               
chr5:62639017-62638774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
36, 121
               

               
Conread position:
               
911-1147
               

               
Cow position:
               
chr5:65883659-65883910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
912-1162
               

               
Cow position:
               
chr5:46425743-46426002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
35, 140
               

               
Conread position:
               
915-1125
               

               
Cow position:
               
chr5:19524009-19523785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
915-1139
               

               
Cow position:
               
chr5:19335672-19335913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
915-1186
               

               
Cow position:
               
chr5:40889188-40889458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
32, 105
               

               
Conread position:
               
915-1191
               

               
Cow position:
               
chr5:68872302-68872015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
35, 51
               

               
Conread position:
               
919-1059
               

               
Cow position:
               
chr5:63192636-63192785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
924-1147
               

               
Cow position:
               
chr5:69520991-69520759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
29, 23
               

               
Conread position:
               
924-1162
               

               
Cow position:
               
chr5:34638983-34638734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
29, 17
               

               
Conread position:
               
939-1147
               

               
Cow position:
               
chr5:31144702-31144921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
8, 124
               

               
Conread position:
               
939-1165
               

               
Cow position:
               
chr5:56820179-56820416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
88, 8
               

               
Conread position:
               
950-1165
               

               
Cow position:
               
chr5:32140636-32140862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
77, 128
               

               
Conread position:
               
950-1166
               

               
Cow position:
               
chr5:35449308-35449098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
146, 70
               

               
Conread position:
               
950-1191
               

               
Cow position:
               
chr5:6670121-6670374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
73, 246
               

               
Conread position:
               
966-1171
               

               
Cow position:
               
chr5:3627096-3627314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
972-1165
               

               
Cow position:
               
chr5:62826702-62826908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
10, 17
               

               
Conread position:
               
973-1162
               

               
Cow position:
               
chr5:43474895-43474696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
10, 48
               

               
Conread position:
               
973-1191
               

               
Cow position:
               
chr5:60126422-60126197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
57, 155
               

               
Conread position:
               
976-1147
               

               
Cow position:
               
chr5:27015726-27015550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
62, 84
               

               
Conread position:
               
977-1153
               

               
Cow position:
               
chr5:7921359-7921542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
979-1165
               

               
Cow position:
               
chr5:6086517-6086716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
980-1165
               

               
Cow position:
               
chr5:34916173-34915987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
107, 61
               
Show alignments to all cow chromosomes.