Non-Coding RNA Search

Cow genome map


           Conread name:
           Ss1.1-Pig4-TMW8060J09.5
        

               Conread position:
               34-413
               

               Cow position:
               chr21:13954146-13954533 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               244
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               42, 80
               

               Conread position:
               148-454
               

               Cow position:
               chr21:27521572-27521275 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               229
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               10, 32
               

               Conread position:
               157-464
               

               Cow position:
               chr21:13585302-13584992 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               241
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               10, 57
               

               Conread position:
               157-464
               

               Cow position:
               chr21:29484744-29485049 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 10
               

               Conread position:
               157-475
               

               Cow position:
               chr21:8451660-8451971 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               231
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               10, 27
               

               Conread position:
               157-483
               

               Cow position:
               chr21:33791606-33791284 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               232
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               10, 22
               

               Conread position:
               163-459
               

               Cow position:
               chr21:34053418-34053131 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               199
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               42, 54
               

               Conread position:
               170-438
               

               Cow position:
               chr21:35061859-35062124 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               194
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               26, 8
               

               Conread position:
               170-507
               

               Cow position:
               chr21:3817989-3818320 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               247
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               6, 33
               

               Conread position:
               172-459
               

               Cow position:
               chr21:10007863-10007577 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               176
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               177, 199
               

               Conread position:
               174-464
               

               Cow position:
               chr21:12961121-12960831 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               212
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               104, 32
               

               Conread position:
               177-462
               

               Cow position:
               chr21:5392761-5392471 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               215
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               13, 53
               

               Conread position:
               178-464
               

               Cow position:
               chr21:33263629-33263911 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               216
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               12, 118
               

               Conread position:
               178-464
               

               Cow position:
               chr21:35897842-35897572 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               213
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               100, 114
               

               Conread position:
               178-479
               

               Cow position:
               chr21:3236310-3236609 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               233
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               12, 35
               

               Conread position:
               179-438
               

               Cow position:
               chr21:41957395-41957137 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               202
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               11, 112
               

               Conread position:
               180-362
               

               Cow position:
               chr21:28907856-28907683 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               137
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               98, 35
               

               Conread position:
               180-426
               

               Cow position:
               chr21:29942790-29943030 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               180
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               8, 64
               

               Conread position:
               180-465
               

               Cow position:
               chr21:33997436-33997159 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               220
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 8
               

               Conread position:
               180-467
               

               Cow position:
               chr21:19614962-19615244 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               205
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               37, 8
               

               Conread position:
               180-491
               

               Cow position:
               chr21:3585576-3585272 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 53
               

               Conread position:
               181-440
               

               Cow position:
               chr21:37361683-37361434 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               206
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 34
               

               Conread position:
               182-440
               

               Cow position:
               chr21:46242458-46242198 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               191
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               28, 121
               

               Conread position:
               196-464
               

               Cow position:
               chr21:9990315-9990577 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               199
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               21, 60
               

               Conread position:
               197-491
               

               Cow position:
               chr21:10005083-10004789 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               197
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               82, 121
               

               Conread position:
               200-314
               

               Cow position:
               chr21:22464866-22464979 (view UCSC Genome Browser custom track)
               

               Alignm length:
               116
               

               Alignm identity:
               93
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               78, 15
               

               Conread position:
               201-491
               

               Cow position:
               chr21:34739651-34739940 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               210
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               10, 93
               

               Conread position:
               206-379
               

               Cow position:
               chr21:24130895-24131061 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               132
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               72, 9
               

               Conread position:
               207-385
               

               Cow position:
               chr21:37845936-37845754 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               136
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               10, 0
               

               Conread position:
               208-382
               

               Cow position:
               chr21:24797508-24797671 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               131
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               9, 25
               

               Conread position:
               208-409
               

               Cow position:
               chr21:23683363-23683559 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               147
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               9, 87
               

               Conread position:
               208-435
               

               Cow position:
               chr21:45151810-45151583 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               169
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               9, 75
               

               Conread position:
               208-444
               

               Cow position:
               chr21:28993813-28993575 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               174
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               9, 138
               

               Conread position:
               208-456
               

               Cow position:
               chr21:6833865-6834108 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               186
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               9, 71
               

               Conread position:
               208-462
               

               Cow position:
               chr21:28443566-28443308 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               200
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               9, 147
               

               Conread position:
               208-464
               

               Cow position:
               chr21:2679365-2679624 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               198
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               9, 94
               

               Conread position:
               208-464
               

               Cow position:
               chr21:38449639-38449378 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               210
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 147
               

               Conread position:
               208-464
               

               Cow position:
               chr21:46849310-46849060 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               200
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 85
               

               Conread position:
               208-478
               

               Cow position:
               chr21:19258639-19258904 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               213
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 97
               

               Conread position:
               208-479
               

               Cow position:
               chr21:3813670-3813400 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               222
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 85
               

               Conread position:
               209-363
               

               Cow position:
               chr21:18979029-18978881 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               122
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               5, 0
               

               Conread position:
               209-382
               

               Cow position:
               chr21:17282517-17282689 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               146
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               8, 84
               

               Conread position:
               209-393
               

               Cow position:
               chr21:34159773-34159958 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               138
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               24, 87
               

               Conread position:
               209-399
               

               Cow position:
               chr21:4268687-4268877 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               151
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               8, 87
               

               Conread position:
               209-399
               

               Cow position:
               chr21:5649720-5649909 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               146
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               8, 37
               

               Conread position:
               209-412
               

               Cow position:
               chr21:8648044-8648251 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               150
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               8, 145
               

               Conread position:
               209-415
               

               Cow position:
               chr21:4080168-4080376 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               167
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               8, 29
               

               Conread position:
               209-417
               

               Cow position:
               chr21:43300843-43300634 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               145
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               8, 39
               

               Conread position:
               209-439
               

               Cow position:
               chr21:42500847-42501080 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               185
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               209-440
               

               Cow position:
               chr21:41951482-41951252 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               159
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               70, 27
               

               Conread position:
               209-443
               

               Cow position:
               chr21:49700222-49699989 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               179
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               9, 84
               

               Conread position:
               209-456
               

               Cow position:
               chr21:34010576-34010335 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               191
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               8, 20
               

               Conread position:
               209-457
               

               Cow position:
               chr21:18494780-18495030 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               202
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 25
               

               Conread position:
               209-458
               

               Cow position:
               chr21:1464042-1464291 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               191
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               7, 86
               

               Conread position:
               209-459
               

               Cow position:
               chr21:3763923-3763680 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               194
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               69, 115
               

               Conread position:
               209-459
               

               Cow position:
               chr21:14452044-14452296 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               195
               

               Alignm E-value:
               9e-39
               

               Alignm gaps (pig, cow):
               8, 21
               

               Conread position:
               209-459
               

               Cow position:
               chr21:17616511-17616259 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               174
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               8, 167
               

               Conread position:
               209-459
               

               Cow position:
               chr21:18289475-18289725 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               194
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               8, 85
               

               Conread position:
               209-459
               

               Cow position:
               chr21:19083786-19083537 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               180
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               8, 13
               

               Conread position:
               209-459
               

               Cow position:
               chr21:25344692-25344923 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               177
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               7, 21
               

               Conread position:
               209-461
               

               Cow position:
               chr21:4399613-4399868 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               201
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               8, 86
               

               Conread position:
               209-464
               

               Cow position:
               chr21:29069515-29069260 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               198
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 84
               

               Conread position:
               209-464
               

               Cow position:
               chr21:32535790-32536044 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               210
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 86
               

               Conread position:
               209-464
               

               Cow position:
               chr21:36795416-36795670 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               204
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 99
               

               Conread position:
               209-464
               

               Cow position:
               chr21:42135810-42135549 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               192
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               8, 145
               

               Conread position:
               209-464
               

               Cow position:
               chr21:42414288-42414031 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               207
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 20
               

               Conread position:
               209-464
               

               Cow position:
               chr21:47465307-47465051 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               195
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               8, 107
               

               Conread position:
               209-491
               

               Cow position:
               chr21:41597629-41597907 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 218
               

               Conread position:
               209-491
               

               Cow position:
               chr21:47764298-47764021 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               215
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               8, 25
               

               Conread position:
               210-372
               

               Cow position:
               chr21:35897298-35897456 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               137
               

               Alignm E-value:
               9e-39
               

               Alignm gaps (pig, cow):
               68, 82
               

               Conread position:
               210-444
               

               Cow position:
               chr21:27607551-27607315 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               161
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               26, 210
               

               Conread position:
               210-446
               

               Cow position:
               chr21:8981316-8981077 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               155
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               8, 0
               

               Conread position:
               210-457
               

               Cow position:
               chr21:4905155-4904907 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               176
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               69, 8
               

               Conread position:
               210-459
               

               Cow position:
               chr21:8549493-8549744 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               188
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               68, 119
               

               Conread position:
               210-459
               

               Cow position:
               chr21:10263855-10264095 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               198
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 69
               

               Conread position:
               210-459
               

               Cow position:
               chr21:18780158-18779909 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               189
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               23, 96
               

               Conread position:
               210-459
               

               Cow position:
               chr21:26829429-26829201 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               184
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               210-461
               

               Cow position:
               chr21:20925694-20925439 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               204
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 85
               

               Conread position:
               210-464
               

               Cow position:
               chr21:643149-643391 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               195
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               68, 82
               

               Conread position:
               210-464
               

               Cow position:
               chr21:5971024-5970772 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               174
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               12, 57
               

               Conread position:
               210-464
               

               Cow position:
               chr21:13738383-13738627 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               195
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               12, 39
               

               Conread position:
               210-464
               

               Cow position:
               chr21:15976458-15976700 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               205
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               133, 18
               

               Conread position:
               210-464
               

               Cow position:
               chr21:21480367-21480117 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               197
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 142
               

               Conread position:
               210-464
               

               Cow position:
               chr21:35569572-35569317 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               193
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               16, 93
               

               Conread position:
               210-469
               

               Cow position:
               chr21:18783869-18783616 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               183
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               18, 97
               

               Conread position:
               210-485
               

               Cow position:
               chr21:26648192-26647918 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               214
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               19, 48
               

               Conread position:
               210-491
               

               Cow position:
               chr21:5426758-5427036 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               219
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 83
               

               Conread position:
               210-495
               

               Cow position:
               chr21:46143758-46144059 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 108
               

               Conread position:
               210-496
               

               Cow position:
               chr21:41579563-41579857 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 28
               

               Conread position:
               210-499
               

               Cow position:
               chr21:28477437-28477725 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               208
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               68, 120
               

               Conread position:
               210-512
               

               Cow position:
               chr21:8125984-8125689 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               211
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               30, 8
               

               Conread position:
               211-380
               

               Cow position:
               chr21:14125862-14126030 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               131
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               67, 107
               

               Conread position:
               211-402
               

               Cow position:
               chr21:13754619-13754796 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               140
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               66, 48
               

               Conread position:
               211-464
               

               Cow position:
               chr21:19363647-19363392 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               200
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 107
               

               Conread position:
               211-464
               

               Cow position:
               chr21:30592486-30592237 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               192
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               67, 17
               

               Conread position:
               212-349
               

               Cow position:
               chr21:14762690-14762551 (view UCSC Genome Browser custom track)
               

               Alignm length:
               140
               

               Alignm identity:
               105
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               7, 0
               

               Conread position:
               212-428
               

               Cow position:
               chr21:2525924-2526142 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               149
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               66, 0
               

               Conread position:
               212-440
               

               Cow position:
               chr21:39765666-39765884 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               161
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               5, 75
               

               Conread position:
               212-457
               

               Cow position:
               chr21:41155679-41155925 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               195
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 27
               

               Conread position:
               212-464
               

               Cow position:
               chr21:45473941-45473691 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               205
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               5, 87
               

               Conread position:
               212-479
               

               Cow position:
               chr21:33562833-33563091 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               214
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 43
               

               Conread position:
               213-413
               

               Cow position:
               chr21:30616697-30616898 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               134
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               65, 0
               

               Conread position:
               213-440
               

               Cow position:
               chr21:8289822-8289591 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               164
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               65, 132
               

               Conread position:
               213-440
               

               Cow position:
               chr21:47495838-47495613 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               157
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               65, 77
               

               Conread position:
               213-443
               

               Cow position:
               chr21:4276775-4276548 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               174
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               13, 134
               

               Conread position:
               213-444
               

               Cow position:
               chr21:21170123-21169897 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               157
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               65, 79
               

               Conread position:
               213-464
               

               Cow position:
               chr21:22856035-22856288 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               190
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               66, 19
               

               Conread position:
               213-464
               

               Cow position:
               chr21:25536816-25537064 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               181
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               65, 9
               

               Conread position:
               214-348
               

               Cow position:
               chr21:24758889-24759023 (view UCSC Genome Browser custom track)
               

               Alignm length:
               136
               

               Alignm identity:
               103
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               62, 114
               

               Conread position:
               214-358
               

               Cow position:
               chr21:14167889-14168030 (view UCSC Genome Browser custom track)
               

               Alignm length:
               146
               

               Alignm identity:
               110
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               53, 78
               

               Conread position:
               214-380
               

               Cow position:
               chr21:28599591-28599759 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               132
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               214-394
               

               Cow position:
               chr21:13163713-13163887 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               146
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               64, 18
               

               Conread position:
               214-421
               

               Cow position:
               chr21:21968134-21968340 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               141
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               64, 19
               

               Conread position:
               214-431
               

               Cow position:
               chr21:20910271-20910063 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               172, 58
               

               Conread position:
               214-439
               

               Cow position:
               chr21:17412472-17412258 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               164
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               175, 64
               

               Conread position:
               214-439
               

               Cow position:
               chr21:19174523-19174747 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               155
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               64, 201
               

               Conread position:
               214-439
               

               Cow position:
               chr21:36762873-36763090 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               170
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               155, 60
               

               Conread position:
               214-440
               

               Cow position:
               chr21:4723299-4723520 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               156
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               62, 69
               

               Conread position:
               214-440
               

               Cow position:
               chr21:36297299-36297532 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               179
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               64, 14
               

               Conread position:
               214-444
               

               Cow position:
               chr21:19170094-19169860 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               51, 0
               

               Conread position:
               214-449
               

               Cow position:
               chr21:16789541-16789775 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               64, 173
               

               Conread position:
               214-451
               

               Cow position:
               chr21:27376269-27376504 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               162
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               56, 68
               

               Conread position:
               214-453
               

               Cow position:
               chr21:37345282-37345043 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               194
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 104
               

               Conread position:
               214-454
               

               Cow position:
               chr21:40058626-40058864 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               192
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 26
               

               Conread position:
               214-458
               

               Cow position:
               chr21:30849119-30848885 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               192
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               64, 40
               

               Conread position:
               214-458
               

               Cow position:
               chr21:45850890-45850648 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               183
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               63, 14
               

               Conread position:
               214-458
               

               Cow position:
               chr21:45866756-45866995 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               190
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               65, 39
               

               Conread position:
               214-459
               

               Cow position:
               chr21:9998900-9998656 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               186
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               133, 15
               

               Conread position:
               214-459
               

               Cow position:
               chr21:10882254-10882505 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               176
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               61, 0
               

               Conread position:
               214-459
               

               Cow position:
               chr21:17455205-17455448 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               164
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               64, 17
               

               Conread position:
               214-459
               

               Cow position:
               chr21:20160504-20160738 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               200
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 14
               

               Conread position:
               214-459
               

               Cow position:
               chr21:23322261-23322016 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               193
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 18
               

               Conread position:
               214-459
               

               Cow position:
               chr21:28429269-28429503 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               184
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               64, 80
               

               Conread position:
               214-459
               

               Cow position:
               chr21:41620939-41621187 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               194
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 111
               

               Conread position:
               214-462
               

               Cow position:
               chr21:20426353-20426595 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               173
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               83, 14
               

               Conread position:
               214-462
               

               Cow position:
               chr21:23801301-23801062 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               175
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               214, 14
               

               Conread position:
               214-464
               

               Cow position:
               chr21:725072-724817 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               199
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 133
               

               Conread position:
               214-464
               

               Cow position:
               chr21:12801924-12801682 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               200
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               64, 16
               

               Conread position:
               214-464
               

               Cow position:
               chr21:16612449-16612692 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               182
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               64, 78
               

               Conread position:
               214-464
               

               Cow position:
               chr21:31691297-31691552 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               192
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               15, 129
               

               Conread position:
               214-464
               

               Cow position:
               chr21:45330788-45330536 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               202
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 224
               

               Conread position:
               214-479
               

               Cow position:
               chr21:44252006-44251760 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               195
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               64, 78
               

               Conread position:
               214-496
               

               Cow position:
               chr21:44671573-44671846 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 131
               

               Conread position:
               214-503
               

               Cow position:
               chr21:34565393-34565100 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               208
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               62, 131
               

               Conread position:
               214-507
               

               Cow position:
               chr21:28190848-28191143 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               219
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               64, 131
               

               Conread position:
               215-377
               

               Cow position:
               chr21:30626364-30626200 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               127
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               63, 14
               

               Conread position:
               215-458
               

               Cow position:
               chr21:27146173-27145931 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               187
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               8, 106
               

               Conread position:
               216-334
               

               Cow position:
               chr21:25158711-25158831 (view UCSC Genome Browser custom track)
               

               Alignm length:
               121
               

               Alignm identity:
               95
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               62, 0
               

               Conread position:
               216-348
               

               Cow position:
               chr21:11877206-11877334 (view UCSC Genome Browser custom track)
               

               Alignm length:
               134
               

               Alignm identity:
               103
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               62, 25
               

               Conread position:
               216-348
               

               Cow position:
               chr21:31278601-31278729 (view UCSC Genome Browser custom track)
               

               Alignm length:
               134
               

               Alignm identity:
               112
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               62, 100
               

               Conread position:
               216-348
               

               Cow position:
               chr21:33955508-33955638 (view UCSC Genome Browser custom track)
               

               Alignm length:
               134
               

               Alignm identity:
               104
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               13, 56
               

               Conread position:
               216-354
               

               Cow position:
               chr21:20549087-20548955 (view UCSC Genome Browser custom track)
               

               Alignm length:
               140
               

               Alignm identity:
               112
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               62, 16
               

               Conread position:
               216-356
               

               Cow position:
               chr21:28919804-28919659 (view UCSC Genome Browser custom track)
               

               Alignm length:
               147
               

               Alignm identity:
               118
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               13, 45
               

               Conread position:
               216-357
               

               Cow position:
               chr21:46132156-46132019 (view UCSC Genome Browser custom track)
               

               Alignm length:
               143
               

               Alignm identity:
               110
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               62, 76
               

               Conread position:
               216-360
               

               Cow position:
               chr21:49145277-49145137 (view UCSC Genome Browser custom track)
               

               Alignm length:
               146
               

               Alignm identity:
               110
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               62, 39
               

               Conread position:
               216-363
               

               Cow position:
               chr21:1510895-1511034 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               120
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               62, 76
               

               Conread position:
               216-365
               

               Cow position:
               chr21:20162357-20162505 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               120
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               62, 41
               

               Conread position:
               216-366
               

               Cow position:
               chr21:47760599-47760750 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               122
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               62, 16
               

               Conread position:
               216-374
               

               Cow position:
               chr21:7791231-7791072 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               115
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               62, 0
               

               Conread position:
               216-375
               

               Cow position:
               chr21:9334437-9334283 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               130
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               62, 76
               

               Conread position:
               216-377
               

               Cow position:
               chr21:13256626-13256783 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               123
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               24, 77
               

               Conread position:
               216-379
               

               Cow position:
               chr21:39664567-39664405 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               125
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               62, 86
               

               Conread position:
               216-381
               

               Cow position:
               chr21:4279454-4279616 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               122
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               62, 129
               

               Conread position:
               216-381
               

               Cow position:
               chr21:11082519-11082358 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               123
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               55, 39
               

               Conread position:
               216-381
               

               Cow position:
               chr21:26241646-26241811 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               130
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               40, 77
               

               Conread position:
               216-381
               

               Cow position:
               chr21:35899630-35899792 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               127
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               62, 100
               

               Conread position:
               216-381
               

               Cow position:
               chr21:37208287-37208125 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               122
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               56, 0
               

               Conread position:
               216-385
               

               Cow position:
               chr21:17643148-17642976 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               140
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               62, 21
               

               Conread position:
               216-397
               

               Cow position:
               chr21:31159077-31159262 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               148
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               7, 0
               

               Conread position:
               216-399
               

               Cow position:
               chr21:7716969-7716783 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               145
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               62, 0
               

               Conread position:
               216-406
               

               Cow position:
               chr21:363477-363658 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               145
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               102, 47
               

               Conread position:
               216-407
               

               Cow position:
               chr21:39771312-39771123 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               137
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               62, 92
               

               Conread position:
               216-415
               

               Cow position:
               chr21:24714475-24714674 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               145
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               134, 17
               

               Conread position:
               216-415
               

               Cow position:
               chr21:28442566-28442759 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               144
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               62, 89
               

               Conread position:
               216-415
               

               Cow position:
               chr21:33419893-33419706 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               160
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               62, 52
               

               Conread position:
               216-415
               

               Cow position:
               chr21:42348856-42348657 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               158
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               62, 129
               

               Conread position:
               216-415
               

               Cow position:
               chr21:47215359-47215164 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               140
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               60, 0
               

               Conread position:
               216-417
               

               Cow position:
               chr21:28512354-28512548 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               157
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               62, 0
               

               Conread position:
               216-417
               

               Cow position:
               chr21:36819391-36819193 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               152
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               56, 47
               

               Conread position:
               216-419
               

               Cow position:
               chr21:29979934-29979737 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               160
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               61, 76
               

               Conread position:
               216-420
               

               Cow position:
               chr21:8618096-8618299 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               161
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               62, 76
               

               Conread position:
               216-420
               

               Cow position:
               chr21:32237119-32237317 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               174
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 76
               

               Conread position:
               216-420
               

               Cow position:
               chr21:42464022-42463812 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               162
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               27, 170
               

               Conread position:
               216-421
               

               Cow position:
               chr21:13395378-13395575 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               158
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               147, 12
               

               Conread position:
               216-423
               

               Cow position:
               chr21:46912366-46912565 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               151
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               62, 21
               

               Conread position:
               216-425
               

               Cow position:
               chr21:34658856-34659061 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               167
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               63, 78
               

               Conread position:
               216-426
               

               Cow position:
               chr21:45375438-45375650 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               165
               

               Alignm E-value:
               9e-39
               

               Alignm gaps (pig, cow):
               62, 12
               

               Conread position:
               216-427
               

               Cow position:
               chr21:15445257-15445044 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               179
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 102
               

               Conread position:
               216-429
               

               Cow position:
               chr21:13703864-13703653 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               152
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               62, 70
               

               Conread position:
               216-430
               

               Cow position:
               chr21:11706929-11706713 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               164
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               62, 12
               

               Conread position:
               216-430
               

               Cow position:
               chr21:12366209-12366413 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               162
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               62, 76
               

               Conread position:
               216-430
               

               Cow position:
               chr21:13850249-13850033 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               156
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               62, 44
               

               Conread position:
               216-430
               

               Cow position:
               chr21:47009619-47009842 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               156
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               57, 36
               

               Conread position:
               216-430
               

               Cow position:
               chr21:48484619-48484415 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               171
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               62, 14
               

               Conread position:
               216-431
               

               Cow position:
               chr21:23478897-23478684 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               81, 27
               

               Conread position:
               216-431
               

               Cow position:
               chr21:23785853-23786063 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               156
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               77, 15
               

               Conread position:
               216-432
               

               Cow position:
               chr21:802472-802274 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               169
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               62, 71
               

               Conread position:
               216-432
               

               Cow position:
               chr21:32665950-32665744 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               152
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               61, 21
               

               Conread position:
               216-433
               

               Cow position:
               chr21:4267528-4267313 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               149
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               61, 200
               

               Conread position:
               216-433
               

               Cow position:
               chr21:42053443-42053231 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               154
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               60, 76
               

               Conread position:
               216-435
               

               Cow position:
               chr21:24094922-24094713 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               172
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               132, 48
               

               Conread position:
               216-435
               

               Cow position:
               chr21:28027625-28027843 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               181
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 89
               

               Conread position:
               216-436
               

               Cow position:
               chr21:81892-82119 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               178
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               62, 140
               

               Conread position:
               216-436
               

               Cow position:
               chr21:25286331-25286552 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               155
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               62, 142
               

               Conread position:
               216-437
               

               Cow position:
               chr21:7564500-7564277 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               170
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               62, 31
               

               Conread position:
               216-437
               

               Cow position:
               chr21:31764314-31764090 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               158
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               60, 35
               

               Conread position:
               216-437
               

               Cow position:
               chr21:33210020-33210240 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               172
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               60, 129
               

               Conread position:
               216-438
               

               Cow position:
               chr21:13488341-13488562 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               169
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               61, 100
               

               Conread position:
               216-438
               

               Cow position:
               chr21:18828487-18828266 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               172
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               62, 12
               

               Conread position:
               216-438
               

               Cow position:
               chr21:23821990-23822206 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               161
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               62, 31
               

               Conread position:
               216-438
               

               Cow position:
               chr21:28944542-28944325 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               154
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               62, 79
               

               Conread position:
               216-438
               

               Cow position:
               chr21:29002340-29002117 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               169
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               60, 129
               

               Conread position:
               216-438
               

               Cow position:
               chr21:44093601-44093822 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               153
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               16, 87
               

               Conread position:
               216-438
               

               Cow position:
               chr21:47823449-47823235 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               158
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               62, 12
               

               Conread position:
               216-439
               

               Cow position:
               chr21:4098697-4098910 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               158
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               153, 61
               

               Conread position:
               216-439
               

               Cow position:
               chr21:10866697-10866920 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               154
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               36, 137
               

               Conread position:
               216-439
               

               Cow position:
               chr21:17144970-17145192 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               154
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               62, 200
               

               Conread position:
               216-439
               

               Cow position:
               chr21:18718490-18718712 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               152
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               60, 200
               

               Conread position:
               216-439
               

               Cow position:
               chr21:24136739-24136961 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               149
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               62, 200
               

               Conread position:
               216-439
               

               Cow position:
               chr21:39700254-39700033 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               153
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               53, 200
               

               Conread position:
               216-440
               

               Cow position:
               chr21:2877690-2877463 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               153
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               58, 54
               

               Conread position:
               216-440
               

               Cow position:
               chr21:4569673-4569450 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               152
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               62, 24
               

               Conread position:
               216-440
               

               Cow position:
               chr21:7132640-7132425 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               167
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               62, 12
               

               Conread position:
               216-443
               

               Cow position:
               chr21:10151617-10151842 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               181
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               62, 12
               

               Conread position:
               216-443
               

               Cow position:
               chr21:21652291-21652517 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               150
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               62, 24
               

               Conread position:
               216-443
               

               Cow position:
               chr21:46973305-46973086 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               178
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               9, 62
               

               Conread position:
               216-444
               

               Cow position:
               chr21:11759642-11759418 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               154
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               29, 78
               

               Conread position:
               216-444
               

               Cow position:
               chr21:42940048-42940275 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               150
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               62, 173
               

               Conread position:
               216-446
               

               Cow position:
               chr21:33235620-33235851 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               152
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               62, 0
               

               Conread position:
               216-449
               

               Cow position:
               chr21:37282131-37282354 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               162
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               62, 75
               

               Conread position:
               216-450
               

               Cow position:
               chr21:1196689-1196924 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               153
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               62, 0
               

               Conread position:
               216-450
               

               Cow position:
               chr21:1483311-1483541 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               180
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               62, 151
               

               Conread position:
               216-451
               

               Cow position:
               chr21:8974042-8974276 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               160
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               62, 140
               

               Conread position:
               216-451
               

               Cow position:
               chr21:13316205-13316440 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               162
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               62, 99
               

               Conread position:
               216-451
               

               Cow position:
               chr21:18781662-18781896 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               158
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               68, 170
               

               Conread position:
               216-451
               

               Cow position:
               chr21:23672566-23672803 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               186
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               62, 6
               

               Conread position:
               216-451
               

               Cow position:
               chr21:43402172-43401936 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               156
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               60, 200
               

               Conread position:
               216-453
               

               Cow position:
               chr21:23606496-23606729 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               172
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               79, 62
               

               Conread position:
               216-454
               

               Cow position:
               chr21:6623965-6624214 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               182
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               57, 13
               

               Conread position:
               216-455
               

               Cow position:
               chr21:19977153-19977393 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               169
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               63, 75
               

               Conread position:
               216-455
               

               Cow position:
               chr21:42145738-42145977 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               186
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               14, 94
               

               Conread position:
               216-456
               

               Cow position:
               chr21:21143703-21143960 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               192
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               62, 137
               

               Conread position:
               216-456
               

               Cow position:
               chr21:31038665-31038426 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               171
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               63, 75
               

               Conread position:
               216-456
               

               Cow position:
               chr21:33727639-33727404 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               173
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               60, 81
               

               Conread position:
               216-457
               

               Cow position:
               chr21:5898577-5898341 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               180
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               9, 99
               

               Conread position:
               216-457
               

               Cow position:
               chr21:16696192-16696427 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               177
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               79, 31
               

               Conread position:
               216-457
               

               Cow position:
               chr21:21216319-21216081 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               175
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               67, 76
               

               Conread position:
               216-458
               

               Cow position:
               chr21:3361192-3360952 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               196
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 6
               

               Conread position:
               216-458
               

               Cow position:
               chr21:14464399-14464641 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               179
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               62, 17
               

               Conread position:
               216-458
               

               Cow position:
               chr21:18842416-18842176 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               185
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               62, 129
               

               Conread position:
               216-458
               

               Cow position:
               chr21:22718959-22718722 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               195
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 106
               

               Conread position:
               216-458
               

               Cow position:
               chr21:23150197-23149959 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               170
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               212, 12
               

               Conread position:
               216-458
               

               Cow position:
               chr21:24607207-24607447 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               192
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               62, 168
               

               Conread position:
               216-458
               

               Cow position:
               chr21:42170452-42170695 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               172
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               67, 219
               

               Conread position:
               216-458
               

               Cow position:
               chr21:43240680-43240926 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               179
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               63, 197
               

               Conread position:
               216-459
               

               Cow position:
               chr21:2785955-2785714 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               192
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 17
               

               Conread position:
               216-459
               

               Cow position:
               chr21:5238217-5238449 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               176
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               67, 101
               

               Conread position:
               216-459
               

               Cow position:
               chr21:5636899-5636661 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               193
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 76
               

               Conread position:
               216-459
               

               Cow position:
               chr21:6764880-6764638 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               189
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               62, 28
               

               Conread position:
               216-459
               

               Cow position:
               chr21:10071107-10070871 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               165
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               206, 55
               

               Conread position:
               216-459
               

               Cow position:
               chr21:12153955-12154193 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               191
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               14, 105
               

               Conread position:
               216-459
               

               Cow position:
               chr21:13048375-13048131 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               185
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               62, 78
               

               Conread position:
               216-459
               

               Cow position:
               chr21:13410001-13409767 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               179
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               62, 142
               

               Conread position:
               216-459
               

               Cow position:
               chr21:13489464-13489708 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               172
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               63, 94
               

               Conread position:
               216-459
               

               Cow position:
               chr21:14760402-14760636 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               196
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 76
               

               Conread position:
               216-459
               

               Cow position:
               chr21:15867134-15867369 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               170
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               216-459
               

               Cow position:
               chr21:16909881-16910123 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               175
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               63, 24
               

               Conread position:
               216-459
               

               Cow position:
               chr21:17302554-17302317 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               178
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               62, 38
               

               Conread position:
               216-459
               

               Cow position:
               chr21:17714135-17714380 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               174
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               62, 120
               

               Conread position:
               216-459
               

               Cow position:
               chr21:19196346-19196102 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               185
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 219
               

               Conread position:
               216-459
               

               Cow position:
               chr21:19766676-19766916 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               175
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               62, 78
               

               Conread position:
               216-459
               

               Cow position:
               chr21:22100048-22099804 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               157
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               62, 0
               

               Conread position:
               216-459
               

               Cow position:
               chr21:23499999-23499762 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               62, 16
               

               Conread position:
               216-459
               

               Cow position:
               chr21:24796216-24795972 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               178
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               62, 105
               

               Conread position:
               216-459
               

               Cow position:
               chr21:24864977-24865223 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               176
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               7, 150
               

               Conread position:
               216-459
               

               Cow position:
               chr21:27863697-27863451 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               203
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 12
               

               Conread position:
               216-459
               

               Cow position:
               chr21:28998084-28997836 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               181
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               68, 170
               

               Conread position:
               216-459
               

               Cow position:
               chr21:31662282-31662529 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               187
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               62, 127
               

               Conread position:
               216-459
               

               Cow position:
               chr21:31676320-31676561 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               197
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               135, 60
               

               Conread position:
               216-459
               

               Cow position:
               chr21:31702134-31701896 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               173
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               59, 68
               

               Conread position:
               216-459
               

               Cow position:
               chr21:36163141-36162897 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               181
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               62, 76
               

               Conread position:
               216-459
               

               Cow position:
               chr21:38918037-38918266 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               180
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               62, 12
               

               Conread position:
               216-459
               

               Cow position:
               chr21:40786492-40786740 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               188
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               62, 104
               

               Conread position:
               216-459
               

               Cow position:
               chr21:40899158-40899401 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               178
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               62, 136
               

               Conread position:
               216-459
               

               Cow position:
               chr21:47730197-47729959 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               169
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               209, 62
               

               Conread position:
               216-460
               

               Cow position:
               chr21:9710882-9710643 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               185
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               22, 77
               

               Conread position:
               216-461
               

               Cow position:
               chr21:17410837-17410593 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               175
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               62, 24
               

               Conread position:
               216-462
               

               Cow position:
               chr21:18942007-18941769 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               170
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               212, 42
               

               Conread position:
               216-462
               

               Cow position:
               chr21:30990446-30990213 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               195
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 12
               

               Conread position:
               216-463
               

               Cow position:
               chr21:39403716-39403469 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               186
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               62, 12
               

               Conread position:
               216-464
               

               Cow position:
               chr21:395698-395935 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               193
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               216-464
               

               Cow position:
               chr21:641406-641654 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               192
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               62, 49
               

               Conread position:
               216-464
               

               Cow position:
               chr21:4795044-4795293 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               185
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               12, 91
               

               Conread position:
               216-464
               

               Cow position:
               chr21:6051328-6051570 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               195
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 100
               

               Conread position:
               216-464
               

               Cow position:
               chr21:7672955-7673190 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               181
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               62, 13
               

               Conread position:
               216-464
               

               Cow position:
               chr21:8351482-8351244 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               183
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               62, 28
               

               Conread position:
               216-464
               

               Cow position:
               chr21:8985371-8985619 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               209
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 76
               

               Conread position:
               216-464
               

               Cow position:
               chr21:9416064-9416317 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               206
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 0
               

               Conread position:
               216-464
               

               Cow position:
               chr21:10514629-10514873 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               185
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               62, 36
               

               Conread position:
               216-464
               

               Cow position:
               chr21:11645147-11644899 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               191
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               62, 101
               

               Conread position:
               216-464
               

               Cow position:
               chr21:11740310-11740052 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               187
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               9, 141
               

               Conread position:
               216-464
               

               Cow position:
               chr21:15610977-15611212 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               188
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               62, 13
               

               Conread position:
               216-464
               

               Cow position:
               chr21:15911222-15911470 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               210
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 80
               

               Conread position:
               216-464
               

               Cow position:
               chr21:16187977-16187740 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               188
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               62, 12
               

               Conread position:
               216-464
               

               Cow position:
               chr21:18845193-18844945 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               188
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               62, 32
               

               Conread position:
               216-464
               

               Cow position:
               chr21:23192696-23192445 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               185
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               62, 135
               

               Conread position:
               216-464
               

               Cow position:
               chr21:23568030-23568291 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               192
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               39, 202
               

               Conread position:
               216-464
               

               Cow position:
               chr21:23984462-23984215 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               178
               

               Alignm E-value:
               9e-39
               

               Alignm gaps (pig, cow):
               62, 169
               

               Conread position:
               216-464
               

               Cow position:
               chr21:24858133-24858382 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               191
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 129
               

               Conread position:
               216-464
               

               Cow position:
               chr21:25764457-25764703 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               187
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               62, 12
               

               Conread position:
               216-464
               

               Cow position:
               chr21:27743564-27743816 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               208
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 45
               

               Conread position:
               216-464
               

               Cow position:
               chr21:28734090-28733845 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               203
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 90
               

               Conread position:
               216-464
               

               Cow position:
               chr21:31253357-31253604 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               197
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 223
               

               Conread position:
               216-464
               

               Cow position:
               chr21:32559532-32559298 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               186
               

               Alignm E-value:
               9e-39
               

               Alignm gaps (pig, cow):
               60, 0
               

               Conread position:
               216-464
               

               Cow position:
               chr21:33982988-33982740 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               195
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 136
               

               Conread position:
               216-464
               

               Cow position:
               chr21:37299287-37299529 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               188
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               12, 82
               

               Conread position:
               216-464
               

               Cow position:
               chr21:37706585-37706348 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               189
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               62, 71
               

               Conread position:
               216-464
               

               Cow position:
               chr21:38120929-38121168 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               190
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               62, 76
               

               Conread position:
               216-464
               

               Cow position:
               chr21:38900595-38900841 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               199
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 130
               

               Conread position:
               216-464
               

               Cow position:
               chr21:39450346-39450094 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               191
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 13
               

               Conread position:
               216-464
               

               Cow position:
               chr21:40589661-40589417 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               195
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 134
               

               Conread position:
               216-464
               

               Cow position:
               chr21:41878298-41878538 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               196
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               62, 49
               

               Conread position:
               216-464
               

               Cow position:
               chr21:41974557-41974307 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               197
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 135
               

               Conread position:
               216-464
               

               Cow position:
               chr21:42841769-42841530 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               192
               

               Alignm E-value:
               8e-38
               

               Alignm gaps (pig, cow):
               62, 11
               

               Conread position:
               216-464
               

               Cow position:
               chr21:42905556-42905304 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               188
               

               Alignm E-value:
               9e-39
               

               Alignm gaps (pig, cow):
               153, 79
               

               Conread position:
               216-464
               

               Cow position:
               chr21:42913924-42913676 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               209
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 81
               

               Conread position:
               216-464
               

               Cow position:
               chr21:44108829-44109070 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               183
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               129, 61
               

               Conread position:
               216-464
               

               Cow position:
               chr21:44515096-44515331 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               188
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               144, 62
               

               Conread position:
               216-464
               

               Cow position:
               chr21:44826057-44825822 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               190
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               62, 17
               

               Conread position:
               216-464
               

               Cow position:
               chr21:45330118-45329879 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               182
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               137, 12
               

               Conread position:
               216-464
               

               Cow position:
               chr21:45915882-45915647 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               176
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               216-464
               

               Cow position:
               chr21:45971336-45971105 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               189
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               135, 62
               

               Conread position:
               216-465
               

               Cow position:
               chr21:2927381-2927124 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               203
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               62, 20
               

               Conread position:
               216-467
               

               Cow position:
               chr21:48262953-48263205 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               196
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               62, 98
               

               Conread position:
               216-468
               

               Cow position:
               chr21:17183743-17183994 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               199
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 34
               

               Conread position:
               216-468
               

               Cow position:
               chr21:42459725-42459464 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               177
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               62, 133
               

               Conread position:
               216-469
               

               Cow position:
               chr21:18935583-18935830 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               181
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               62, 16
               

               Conread position:
               216-476
               

               Cow position:
               chr21:24765106-24765362 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               207
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 12
               

               Conread position:
               216-479
               

               Cow position:
               chr21:8235722-8235472 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               193
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               62, 12
               

               Conread position:
               216-479
               

               Cow position:
               chr21:25127430-25127687 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               195
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               133, 20
               

               Conread position:
               216-482
               

               Cow position:
               chr21:33543-33802 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               206
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 76
               

               Conread position:
               216-482
               

               Cow position:
               chr21:25382831-25383110 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               214
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               62, 47
               

               Conread position:
               216-482
               

               Cow position:
               chr21:34391148-34390892 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               214
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 17
               

               Conread position:
               216-489
               

               Cow position:
               chr21:45355658-45355927 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               195
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               62, 90
               

               Conread position:
               216-491
               

               Cow position:
               chr21:1591373-1591650 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               208
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               100, 16
               

               Conread position:
               216-491
               

               Cow position:
               chr21:4282046-4281779 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               204
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               62, 81
               

               Conread position:
               216-491
               

               Cow position:
               chr21:7582087-7581809 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               221
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 12
               

               Conread position:
               216-491
               

               Cow position:
               chr21:10118375-10118655 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               209
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               216-491
               

               Cow position:
               chr21:10727103-10727373 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               210
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 23
               

               Conread position:
               216-491
               

               Cow position:
               chr21:17936192-17936468 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               184
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               62, 200
               

               Conread position:
               216-491
               

               Cow position:
               chr21:18568829-18568543 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               210
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               9, 101
               

               Conread position:
               216-491
               

               Cow position:
               chr21:23586698-23586978 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               224
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 136
               

               Conread position:
               216-491
               

               Cow position:
               chr21:24887831-24888095 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               205
               

               Alignm E-value:
               9e-39
               

               Alignm gaps (pig, cow):
               62, 12
               

               Conread position:
               216-491
               

               Cow position:
               chr21:30231881-30231598 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               221
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 198
               

               Conread position:
               216-491
               

               Cow position:
               chr21:33729255-33729526 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               211
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               17, 88
               

               Conread position:
               216-491
               

               Cow position:
               chr21:40133977-40134253 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               210
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 128
               

               Conread position:
               216-491
               

               Cow position:
               chr21:42384327-42384604 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               219
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 218
               

               Conread position:
               216-492
               

               Cow position:
               chr21:13805412-13805690 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               178
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               79, 214
               

               Conread position:
               216-493
               

               Cow position:
               chr21:10601546-10601277 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               205
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               208, 12
               

               Conread position:
               216-497
               

               Cow position:
               chr21:47802438-47802161 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               223
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 74
               

               Conread position:
               216-499
               

               Cow position:
               chr21:39888922-39888644 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               214
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               208, 62
               

               Conread position:
               216-508
               

               Cow position:
               chr21:426612-426919 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               221
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               63, 12
               

               Conread position:
               216-508
               

               Cow position:
               chr21:20262512-20262223 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               209
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               62, 79
               

               Conread position:
               216-508
               

               Cow position:
               chr21:22860824-22861114 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               221
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               62, 12
               

               Conread position:
               216-515
               

               Cow position:
               chr21:24222716-24222418 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               223
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 43
               

               Conread position:
               217-375
               

               Cow position:
               chr21:34254459-34254302 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               125
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               61, 75
               

               Conread position:
               217-382
               

               Cow position:
               chr21:42465652-42465817 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               131
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               61, 103
               

               Conread position:
               217-441
               

               Cow position:
               chr21:5596969-5597192 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               159
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               61, 103
               

               Conread position:
               217-441
               

               Cow position:
               chr21:12973430-12973204 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               162
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               61, 75
               

               Conread position:
               217-451
               

               Cow position:
               chr21:10493600-10493835 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               61, 192
               

               Conread position:
               217-451
               

               Cow position:
               chr21:10967056-10967286 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               61, 77
               

               Conread position:
               217-456
               

               Cow position:
               chr21:17511599-17511835 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               179
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               212, 60
               

               Conread position:
               217-459
               

               Cow position:
               chr21:3498321-3498556 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               182
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               61, 75
               

               Conread position:
               217-459
               

               Cow position:
               chr21:49662294-49662059 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               61, 53
               

               Conread position:
               217-462
               

               Cow position:
               chr21:33350565-33350806 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               191
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               61, 128
               

               Conread position:
               217-463
               

               Cow position:
               chr21:28881965-28882203 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               204
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 75
               

               Conread position:
               217-464
               

               Cow position:
               chr21:3047509-3047744 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               184
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               61, 11
               

               Conread position:
               217-464
               

               Cow position:
               chr21:7709988-7710231 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               174
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               61, 102
               

               Conread position:
               217-503
               

               Cow position:
               chr21:18790733-18790456 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               227
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 0
               

               Conread position:
               218-411
               

               Cow position:
               chr21:13303643-13303832 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               155
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               60, 72
               

               Conread position:
               218-420
               

               Cow position:
               chr21:17475642-17475843 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               142
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               60, 103
               

               Conread position:
               218-421
               

               Cow position:
               chr21:17434497-17434295 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               149
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               60, 114
               

               Conread position:
               218-426
               

               Cow position:
               chr21:34738422-34738638 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               166
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               60, 77
               

               Conread position:
               218-433
               

               Cow position:
               chr21:39075885-39075673 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               148
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               60, 10
               

               Conread position:
               218-439
               

               Cow position:
               chr21:2495350-2495130 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               154
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               60, 198
               

               Conread position:
               218-440
               

               Cow position:
               chr21:17674412-17674189 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               163
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               58, 40
               

               Conread position:
               218-443
               

               Cow position:
               chr21:23899983-23899760 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               150
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               60, 198
               

               Conread position:
               218-447
               

               Cow position:
               chr21:13751210-13751443 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               162
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               64, 104
               

               Conread position:
               218-448
               

               Cow position:
               chr21:26097586-26097350 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               163
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               50, 10
               

               Conread position:
               218-448
               

               Cow position:
               chr21:40244258-40244490 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               173
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               60, 0
               

               Conread position:
               218-457
               

               Cow position:
               chr21:46829445-46829218 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               180
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               9, 75
               

               Conread position:
               218-459
               

               Cow position:
               chr21:12087418-12087651 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               173
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               61, 15
               

               Conread position:
               218-464
               

               Cow position:
               chr21:5137666-5137420 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               195
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               60, 74
               

               Conread position:
               218-464
               

               Cow position:
               chr21:18850395-18850159 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               181
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               212, 59
               

               Conread position:
               218-464
               

               Cow position:
               chr21:27341773-27341524 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               190
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               60, 74
               

               Conread position:
               218-491
               

               Cow position:
               chr21:7067868-7068148 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               197
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               60, 105
               

               Conread position:
               218-491
               

               Cow position:
               chr21:20044947-20044668 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               209
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               60, 10
               

               Conread position:
               218-491
               

               Cow position:
               chr21:21223114-21223378 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               197
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               60, 10
               

               Conread position:
               218-491
               

               Cow position:
               chr21:30607264-30606991 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               220
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 74
               

               Conread position:
               219-381
               

               Cow position:
               chr21:49353026-49353185 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               121
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               58, 96
               

               Conread position:
               219-415
               

               Cow position:
               chr21:19937108-19936917 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               151
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               59, 73
               

               Conread position:
               219-427
               

               Cow position:
               chr21:18929522-18929729 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               149
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               59, 94
               

               Conread position:
               219-427
               

               Cow position:
               chr21:21982631-21982838 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               150
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               59, 94
               

               Conread position:
               219-437
               

               Cow position:
               chr21:9278197-9278422 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               168
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               59, 102
               

               Conread position:
               219-456
               

               Cow position:
               chr21:22194286-22194056 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               174
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               129, 59
               

               Conread position:
               219-464
               

               Cow position:
               chr21:5566814-5567054 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               194
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               31, 115
               

               Conread position:
               219-464
               

               Cow position:
               chr21:17193935-17193684 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               193
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               59, 73
               

               Conread position:
               219-464
               

               Cow position:
               chr21:21077155-21077393 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               187
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               59, 40
               

               Conread position:
               219-464
               

               Cow position:
               chr21:48176651-48176891 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               179
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               60, 95
               

               Conread position:
               219-482
               

               Cow position:
               chr21:41198586-41198316 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               196
               

               Alignm E-value:
               9e-39
               

               Alignm gaps (pig, cow):
               59, 251
               

               Conread position:
               219-491
               

               Cow position:
               chr21:32339912-32339644 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               212
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 68
               

               Conread position:
               220-360
               

               Cow position:
               chr21:11173793-11173936 (view UCSC Genome Browser custom track)
               

               Alignm length:
               144
               

               Alignm identity:
               112
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               220-366
               

               Cow position:
               chr21:28029223-28029369 (view UCSC Genome Browser custom track)
               

               Alignm length:
               148
               

               Alignm identity:
               123
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               59, 125
               

               Conread position:
               220-452
               

               Cow position:
               chr21:12616965-12617195 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               181
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               58, 72
               

               Conread position:
               220-459
               

               Cow position:
               chr21:28810437-28810200 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               190
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               127, 35
               

               Conread position:
               220-464
               

               Cow position:
               chr21:912141-911899 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               197
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 72
               

               Conread position:
               220-464
               

               Cow position:
               chr21:28989438-28989677 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               185
               

               Alignm E-value:
               8e-38
               

               Alignm gaps (pig, cow):
               58, 72
               

               Conread position:
               220-489
               

               Cow position:
               chr21:3381255-3380984 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               214
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 13
               

               Conread position:
               220-491
               

               Cow position:
               chr21:23535542-23535805 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               203
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               137, 58
               

               Conread position:
               221-449
               

               Cow position:
               chr21:10608629-10608400 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               171
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               10, 71
               

               Conread position:
               221-458
               

               Cow position:
               chr21:9872794-9873021 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               171
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               94, 54
               

               Conread position:
               221-459
               

               Cow position:
               chr21:5153444-5153683 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               188
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               57, 73
               

               Conread position:
               221-479
               

               Cow position:
               chr21:27124300-27124038 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               195
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               57, 62
               

               Conread position:
               222-377
               

               Cow position:
               chr21:44220047-44220198 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               117
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               55, 61
               

               Conread position:
               222-400
               

               Cow position:
               chr21:48108035-48107862 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               130
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               56, 70
               

               Conread position:
               222-409
               

               Cow position:
               chr21:40065485-40065303 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               144
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               127, 49
               

               Conread position:
               222-418
               

               Cow position:
               chr21:35997001-35997194 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               142
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               56, 70
               

               Conread position:
               222-443
               

               Cow position:
               chr21:44754949-44754734 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               159
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               56, 120
               

               Conread position:
               222-458
               

               Cow position:
               chr21:36756442-36756661 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               188
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               206, 56
               

               Conread position:
               222-458
               

               Cow position:
               chr21:47861022-47861257 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               183
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               56, 79
               

               Conread position:
               222-464
               

               Cow position:
               chr21:13365172-13365410 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               193
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               56, 70
               

               Conread position:
               222-464
               

               Cow position:
               chr21:24598489-24598725 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               174
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               56, 70
               

               Conread position:
               222-478
               

               Cow position:
               chr21:30150438-30150181 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               186
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               56, 73
               

               Conread position:
               222-491
               

               Cow position:
               chr21:6102439-6102165 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               219
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 108
               

               Conread position:
               222-501
               

               Cow position:
               chr21:21169667-21169385 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               222
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 66
               

               Conread position:
               222-502
               

               Cow position:
               chr21:13089652-13089362 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               208
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               16, 171
               

               Conread position:
               223-427
               

               Cow position:
               chr21:393850-394048 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               162
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               55, 122
               

               Conread position:
               223-457
               

               Cow position:
               chr21:29214320-29214100 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               173
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               55, 69
               

               Conread position:
               223-464
               

               Cow position:
               chr21:17174971-17175214 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               195
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 72
               

               Conread position:
               223-465
               

               Cow position:
               chr21:1058905-1059147 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               191
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 91
               

               Conread position:
               224-407
               

               Cow position:
               chr21:38692019-38692197 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               139
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               53, 68
               

               Conread position:
               224-417
               

               Cow position:
               chr21:4189664-4189855 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               141
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               54, 68
               

               Conread position:
               224-431
               

               Cow position:
               chr21:48251200-48250994 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               149
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               54, 121
               

               Conread position:
               224-440
               

               Cow position:
               chr21:712764-712968 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               161
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               54, 68
               

               Conread position:
               225-458
               

               Cow position:
               chr21:41455122-41454887 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               169
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               13, 87
               

               Conread position:
               225-458
               

               Cow position:
               chr21:43357430-43357193 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               198
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 26
               

               Conread position:
               225-464
               

               Cow position:
               chr21:34653913-34654141 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               178
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               53, 23
               

               Conread position:
               225-479
               

               Cow position:
               chr21:13128263-13128013 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               201
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 67
               

               Conread position:
               226-450
               

               Cow position:
               chr21:4998655-4998434 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               173
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               52, 66
               

               Conread position:
               226-459
               

               Cow position:
               chr21:13898020-13898250 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               181
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               201, 51
               

               Conread position:
               226-459
               

               Cow position:
               chr21:23311113-23310890 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               173
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               52, 25
               

               Conread position:
               226-459
               

               Cow position:
               chr21:44114297-44114068 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               166
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               143, 11
               

               Conread position:
               226-464
               

               Cow position:
               chr21:28211028-28211262 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               180
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               52, 120
               

               Conread position:
               226-464
               

               Cow position:
               chr21:45439419-45439169 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               186
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               12, 67
               

               Conread position:
               226-464
               

               Cow position:
               chr21:46860270-46860051 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               170
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               89, 49
               

               Conread position:
               226-491
               

               Cow position:
               chr21:10000912-10001171 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               213
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 43
               

               Conread position:
               228-416
               

               Cow position:
               chr21:6765714-6765898 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               142
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               50, 87
               

               Conread position:
               228-469
               

               Cow position:
               chr21:9028454-9028696 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               175
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               50, 189
               

               Conread position:
               229-440
               

               Cow position:
               chr21:5344491-5344699 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               167
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               49, 7
               

               Conread position:
               229-491
               

               Cow position:
               chr21:15584575-15584323 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               211
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 29
               

               Conread position:
               232-464
               

               Cow position:
               chr21:10114491-10114263 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               184
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               46, 60
               

               Conread position:
               232-464
               

               Cow position:
               chr21:36793730-36793962 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               181
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               46, 60
               

               Conread position:
               233-434
               

               Cow position:
               chr21:27624551-27624744 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               156
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               45, 22
               

               Conread position:
               233-458
               

               Cow position:
               chr21:6910044-6909821 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               169
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               50, 7
               

               Conread position:
               233-459
               

               Cow position:
               chr21:39401433-39401657 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               187
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 64
               

               Conread position:
               233-461
               

               Cow position:
               chr21:28617429-28617656 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               178
               

               Alignm E-value:
               8e-38
               

               Alignm gaps (pig, cow):
               45, 26
               

               Conread position:
               233-464
               

               Cow position:
               chr21:18065085-18064847 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               188
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               45, 76
               

               Conread position:
               234-440
               

               Cow position:
               chr21:32297671-32297466 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               155
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               44, 111
               

               Conread position:
               234-459
               

               Cow position:
               chr21:44148-44367 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               170
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               110, 44
               

               Conread position:
               234-459
               

               Cow position:
               chr21:42190329-42190109 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               183
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               112, 44
               

               Conread position:
               234-464
               

               Cow position:
               chr21:28244315-28244538 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               182
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               44, 58
               

               Conread position:
               234-485
               

               Cow position:
               chr21:32454741-32454991 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               180
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               81, 151
               

               Conread position:
               237-378
               

               Cow position:
               chr21:43631360-43631219 (view UCSC Genome Browser custom track)
               

               Alignm length:
               143
               

               Alignm identity:
               115
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               41, 106
               

               Conread position:
               237-431
               

               Cow position:
               chr21:11027514-11027319 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               143
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               41, 7
               

               Conread position:
               237-457
               

               Cow position:
               chr21:41590714-41590511 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               158
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               41, 78
               

               Conread position:
               237-458
               

               Cow position:
               chr21:15545528-15545306 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               157
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               41, 57
               

               Conread position:
               237-459
               

               Cow position:
               chr21:13840165-13840389 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               173
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               41, 37
               

               Conread position:
               238-464
               

               Cow position:
               chr21:45921215-45920991 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               177
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               40, 57
               

               Conread position:
               238-467
               

               Cow position:
               chr21:5455144-5454921 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               187
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               42, 55
               

               Conread position:
               239-459
               

               Cow position:
               chr21:21769969-21770189 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               162
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               39, 81
               

               Conread position:
               239-491
               

               Cow position:
               chr21:10633796-10633541 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               195
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               40, 53
               

               Conread position:
               240-455
               

               Cow position:
               chr21:9477004-9477222 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               157
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               43, 197
               

               Conread position:
               240-491
               

               Cow position:
               chr21:24642364-24642617 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               207
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 48
               

               Conread position:
               240-491
               

               Cow position:
               chr21:26244777-26245010 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               196
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               220, 38
               

               Conread position:
               243-429
               

               Cow position:
               chr21:12749376-12749198 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               141
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               35, 109
               

               Conread position:
               243-493
               

               Cow position:
               chr21:10823402-10823659 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               196
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               35, 200
               

               Conread position:
               244-459
               

               Cow position:
               chr21:10261131-10261343 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               155
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               39, 48
               

               Conread position:
               245-464
               

               Cow position:
               chr21:6713674-6713458 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               171
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               11, 36
               

               Conread position:
               247-459
               

               Cow position:
               chr21:44962647-44962857 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               157
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               101, 136
               

               Conread position:
               247-464
               

               Cow position:
               chr21:14515697-14515914 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               152
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               13, 107
               

               Conread position:
               248-459
               

               Cow position:
               chr21:47009386-47009173 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               167
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               31, 44
               

               Conread position:
               248-462
               

               Cow position:
               chr21:18041989-18041782 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               164
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               30, 41
               

               Conread position:
               249-509
               

               Cow position:
               chr21:957521-957785 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               214
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               5, 121
               

               Conread position:
               250-467
               

               Cow position:
               chr21:35354393-35354601 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               156
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               65, 25
               

               Conread position:
               251-464
               

               Cow position:
               chr21:42007603-42007394 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               168
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               93, 26
               

               Conread position:
               253-459
               

               Cow position:
               chr21:23980328-23980120 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               163
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               25, 170
               

               Conread position:
               253-464
               

               Cow position:
               chr21:29978903-29978693 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               172
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               25, 7
               

               Conread position:
               253-499
               

               Cow position:
               chr21:9301067-9301319 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               168
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               26, 229
               

               Conread position:
               254-435
               

               Cow position:
               chr21:17637758-17637938 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               134
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               24, 114
               

               Conread position:
               254-442
               

               Cow position:
               chr21:4585506-4585321 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               138
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               24, 131
               

               Conread position:
               254-464
               

               Cow position:
               chr21:11250725-11250940 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               174
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               24, 181
               

               Conread position:
               255-459
               

               Cow position:
               chr21:937899-938083 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               149
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               23, 0
               

               Conread position:
               256-425
               

               Cow position:
               chr21:12640195-12640364 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               124
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               22, 163
               
UCSC Genome Browser
               Conread position:
               256-438
               

               Cow position:
               chr21:5021330-5021510 (view  custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               132
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               22, 160
               
UCSC Genome Browser
               
               
               
Conread position: 256-464

               
               
               
Cow position: chr21:11359899-11360103 (view  custom track)

               
               
               
Alignm length: 210

               
               
               
Alignm identity: 164

               
               
               
Alignm E-value: 9.99967e-42

               
               
               
Alignm gaps (pig, cow): 23, 67
UCSC Genome Browser
               
               
               
Conread position: 256-467

               
               
               
Cow position: chr21:2293854-2294053 (view  custom track)

               
               
               
Alignm length: 213

               
               
               
Alignm identity: 160

               
               
               
Alignm E-value: 4e-31

               
               
               
Alignm gaps (pig, cow): 168, 22

               
               
               Conread position:256-491
               
               
               Cow position:chr21:28923978-28924205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:181
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):22, 36

               
               
               Conread position:256-508
               
               
               Cow position:chr21:12462109-12461855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 31

               
               
               Conread position:259-454
               
               
               Cow position:chr21:20260456-20260262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):19, 35

               
               
               Conread position:259-457
               
               
               Cow position:chr21:12723021-12723214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):19, 86

               
               
               Conread position:259-458
               
               
               Cow position:chr21:20152812-20153017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):19, 33

               
               
               Conread position:259-459
               
               
               Cow position:chr21:34736895-34737092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):19, 48

               
               
               Conread position:259-464
               
               
               Cow position:chr21:39809764-39809961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):19, 33

               
               
               Conread position:259-467
               
               
               Cow position:chr21:17856408-17856614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):19, 86

               
               
               Conread position:259-491
               
               
               Cow position:chr21:17875331-17875097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):19, 175

               
               
               Conread position:259-491
               
               
               Cow position:chr21:20418825-20418586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:262-459
               
               
               Cow position:chr21:42096935-42097131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):162, 19

               
               
               Conread position:262-464
               
               
               Cow position:chr21:42131738-42131527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):17, 201

               
               
               Conread position:263-491
               
               
               Cow position:chr21:12301635-12301415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):15, 47

               
               
               Conread position:265-510
               
               
               Cow position:chr21:34151451-34151699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):87, 13

               
               
               Conread position:266-449
               
               
               Cow position:chr21:34141316-34141132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):103, 78

               
               
               Conread position:266-523
               
               
               Cow position:chr21:20192774-20193020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):12, 28

               
               
               Conread position:267-430
               
               
               Cow position:chr21:37886283-37886442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):11, 78

               
               
               Conread position:268-428
               
               
               Cow position:chr21:27810278-27810438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):10, 77

               
               
               Conread position:269-442
               
               
               Cow position:chr21:949794-949633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):9, 23

               
               
               Conread position:271-459
               
               
               Cow position:chr21:34722911-34722726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:277-454
               
               
               Cow position:chr21:11131463-11131639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:277-459
               
               
               Cow position:chr21:13519074-13519252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):145, 117

               
               
               Conread position:277-459
               
               
               Cow position:chr21:18155690-18155504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):72, 145

               
               
               Conread position:277-459
               
               
               Cow position:chr21:40168751-40168563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:278-490
               
               
               Cow position:chr21:25629027-25628815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):76, 51

               
               
               Conread position:279-464
               
               
               Cow position:chr21:36789679-36789862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):144, 70

               
               
               Conread position:280-459
               
               
               Cow position:chr21:36279891-36280067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):145, 6

               
               
               Conread position:282-459
               
               
               Cow position:chr21:16481558-16481381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):74, 82

               
               
               Conread position:284-459
               
               
               Cow position:chr21:12916539-12916359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):31, 36

               
               
               Conread position:288-491
               
               
               Cow position:chr21:2260474-2260269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):15, 66

               
               
               Conread position:295-464
               
               
               Cow position:chr21:4568183-4568352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):139, 49

               
               
               Conread position:296-444
               
               
               Cow position:chr21:46469868-46470015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:118
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):12, 38

               
               
               Conread position:296-457
               
               
               Cow position:chr21:8419008-8418848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:296-459
               
               
               Cow position:chr21:16914674-16914834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:296-459
               
               
               Cow position:chr21:30236918-30236762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:296-464
               
               
               Cow position:chr21:29224963-29224793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):53, 111

               
               
               Conread position:297-456
               
               
               Cow position:chr21:38664538-38664698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):108, 53

               
               
               Conread position:297-457
               
               
               Cow position:chr21:43367944-43368106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):52, 125

               
               
               Conread position:298-439
               
               
               Cow position:chr21:32904254-32904116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):71, 53

               
               
               Conread position:298-458
               
               
               Cow position:chr21:42343480-42343649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):17, 21

               
               
               Conread position:298-459
               
               
               Cow position:chr21:18414951-18415115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):64, 158

               
               
               Conread position:298-459
               
               
               Cow position:chr21:37790101-37789937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):46, 37

               
               
               Conread position:298-464
               
               
               Cow position:chr21:9980063-9979903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:298-464
               
               
               Cow position:chr21:10561683-10561516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):17, 22

               
               
               Conread position:298-464
               
               
               Cow position:chr21:10673032-10673188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:299-491
               
               
               Cow position:chr21:8206674-8206868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):136, 51

               
               
               Conread position:300-441
               
               
               Cow position:chr21:6017519-6017664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:300-466
               
               
               Cow position:chr21:5985415-5985249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):44, 106

               
               
               Conread position:301-459
               
               
               Cow position:chr21:22121426-22121572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:303-464
               
               
               Cow position:chr21:9940288-9940121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):68, 47

               
               
               Conread position:303-490
               
               
               Cow position:chr21:8527571-8527389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):12, 17

               
               
               Conread position:305-459
               
               
               Cow position:chr21:6997846-6998002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:305-464
               
               
               Cow position:chr21:7391370-7391210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):30, 11

               
               
               Conread position:305-464
               
               
               Cow position:chr21:30835270-30835433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:308-458
               
               
               Cow position:chr21:22210333-22210185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:310-457
               
               
               Cow position:chr21:8329554-8329406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:314-464
               
               
               Cow position:chr21:7394296-7394451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:317-482
               
               
               Cow position:chr21:9036215-9036384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):33, 65

               
               
               Conread position:319-459
               
               
               Cow position:chr21:10410140-10410286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:118
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):28, 134

               
               
               Conread position:319-459
               
               
               Cow position:chr21:37014481-37014344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:319-465
               
               
               Cow position:chr21:16152353-16152508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:322-451
               
               
               Cow position:chr21:13495465-13495597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:322-459
               
               
               Cow position:chr21:11198224-11198088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:322-459
               
               
               Cow position:chr21:36909859-36909993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:322-464
               
               
               Cow position:chr21:33360109-33359967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:322-491
               
               
               Cow position:chr21:46552181-46552007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:323-464
               
               
               Cow position:chr21:47714081-47713937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:121
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):28, 8

               
               
               Conread position:324-491
               
               
               Cow position:chr21:19673731-19673902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:325-459
               
               
               Cow position:chr21:34727312-34727175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):39, 24

               
               
               Conread position:325-464
               
               
               Cow position:chr21:15544290-15544153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:111
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:325-464
               
               
               Cow position:chr21:40266049-40266192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:325-501
               
               
               Cow position:chr21:1511219-1511400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):85, 27

               
               
               Conread position:327-457
               
               
               Cow position:chr21:20760006-20759884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:327-491
               
               
               Cow position:chr21:40432379-40432541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):144, 78

               
               
               Conread position:329-490
               
               
               Cow position:chr21:19210646-19210809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):138, 0

               
               
               Conread position:332-464
               
               
               Cow position:chr21:22720162-22720295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):95, 10

               
               
               Conread position:332-464
               
               
               Cow position:chr21:35899777-35899911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:342-459
               
               
               Cow position:chr21:14228626-14228505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:104
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:343-459
               
               
               Cow position:chr21:17890248-17890364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:97
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:343-464
               
               
               Cow position:chr21:977199-977081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):47, 20

               
               
               Conread position:343-464
               
               
               Cow position:chr21:47363793-47363669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:343-491
               
               
               Cow position:chr21:5464692-5464844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):85, 130

               
               
               Conread position:344-461
               
               
               Cow position:chr21:9302481-9302362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:100
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):42, 38

               
               
               Conread position:344-491
               
               
               Cow position:chr21:868979-868828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):83, 65

               
               
               Conread position:346-459
               
               
               Cow position:chr21:36910688-36910799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:92
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:346-464
               
               
               Cow position:chr21:28919576-28919456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:101
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:346-464
               
               
               Cow position:chr21:37496217-37496106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:99
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):82, 14

               
               
               Conread position:351-477
               
               
               Cow position:chr21:21907476-21907349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):73, 117
Show alignments to all cow chromosomes.
Conread position:	34-413
Cow position:	chr21:13954146-13954533 (view UCSC Genome Browser custom track)
Alignm length:	391
Alignm identity:	244
Alignm E-value:	6e-24
Alignm gaps (pig, cow):	42, 80
Conread position:	148-454
Cow position:	chr21:27521572-27521275 (view UCSC Genome Browser custom track)
Alignm length:	314
Alignm identity:	229
Alignm E-value:	4.00001e-41
Alignm gaps (pig, cow):	10, 32
Conread position:	157-464
Cow position:	chr21:13585302-13584992 (view UCSC Genome Browser custom track)
Alignm length:	329
Alignm identity:	241
Alignm E-value:	2e-37
Alignm gaps (pig, cow):	10, 57
Conread position:	157-475
Cow position:	chr21:8451660-8451971 (view UCSC Genome Browser custom track)
Alignm length:	326
Alignm identity:	231
Alignm E-value:	2e-37
Alignm gaps (pig, cow):	10, 27
Conread position:	157-483
Cow position:	chr21:33791606-33791284 (view UCSC Genome Browser custom track)
Alignm length:	331
Alignm identity:	232
Alignm E-value:	2.00386e-43
Alignm gaps (pig, cow):	10, 22
Conread position:	163-459
Cow position:	chr21:34053418-34053131 (view UCSC Genome Browser custom track)
Alignm length:	302
Alignm identity:	199
Alignm E-value:	4e-22
Alignm gaps (pig, cow):	42, 54
Conread position:	170-438
Cow position:	chr21:35061859-35062124 (view UCSC Genome Browser custom track)
Alignm length:	276
Alignm identity:	194
Alignm E-value:	1e-29
Alignm gaps (pig, cow):	26, 8
Conread position:	170-507
Cow position:	chr21:3817989-3818320 (view UCSC Genome Browser custom track)
Alignm length:	346
Alignm identity:	247
Alignm E-value:	5.04467e-44
Alignm gaps (pig, cow):	6, 33
Conread position:	172-459
Cow position:	chr21:10007863-10007577 (view UCSC Genome Browser custom track)
Alignm length:	294
Alignm identity:	176
Alignm E-value:	4e-32
Alignm gaps (pig, cow):	177, 199
Conread position:	174-464
Cow position:	chr21:12961121-12960831 (view UCSC Genome Browser custom track)
Alignm length:	296
Alignm identity:	212
Alignm E-value:	2.00386e-43
Alignm gaps (pig, cow):	104, 32
Conread position:	177-462
Cow position:	chr21:5392761-5392471 (view UCSC Genome Browser custom track)
Alignm length:	295
Alignm identity:	215
Alignm E-value:	5.00264e-43
Alignm gaps (pig, cow):	13, 53
Conread position:	178-464
Cow position:	chr21:33263629-33263911 (view UCSC Genome Browser custom track)
Alignm length:	296
Alignm identity:	216
Alignm E-value:	3e-38
Alignm gaps (pig, cow):	12, 118
Conread position:	178-479
Cow position:	chr21:3236310-3236609 (view UCSC Genome Browser custom track)
Alignm length:	313
Alignm identity:	233
Alignm E-value:	5.04467e-44
Alignm gaps (pig, cow):	12, 35
Conread position:	179-438
Cow position:	chr21:41957395-41957137 (view UCSC Genome Browser custom track)
Alignm length:	268
Alignm identity:	202
Alignm E-value:	9.99967e-42
Alignm gaps (pig, cow):	11, 112
Conread position:	180-362
Cow position:	chr21:28907856-28907683 (view UCSC Genome Browser custom track)
Alignm length:	184
Alignm identity:	137
Alignm E-value:	2e-24
Alignm gaps (pig, cow):	98, 35
Conread position:	180-426
Cow position:	chr21:29942790-29943030 (view UCSC Genome Browser custom track)
Alignm length:	251
Alignm identity:	180
Alignm E-value:	4e-32
Alignm gaps (pig, cow):	8, 64
Conread position:	180-465
Cow position:	chr21:33997436-33997159 (view UCSC Genome Browser custom track)
Alignm length:	291
Alignm identity:	220
Alignm E-value:	0
Alignm gaps (pig, cow):	18, 8
Conread position:	180-467
Cow position:	chr21:19614962-19615244 (view UCSC Genome Browser custom track)
Alignm length:	290
Alignm identity:	205
Alignm E-value:	3e-40
Alignm gaps (pig, cow):	37, 8
Conread position:	180-491
Cow position:	chr21:3585576-3585272 (view UCSC Genome Browser custom track)
Alignm length:	320
Alignm identity:	245
Alignm E-value:	0
Alignm gaps (pig, cow):	10, 53
Conread position:	181-440
Cow position:	chr21:37361683-37361434 (view UCSC Genome Browser custom track)
Alignm length:	264
Alignm identity:	206
Alignm E-value:	0
Alignm gaps (pig, cow):	15, 34