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Cow genome map

           
Conread name:
           
Ss1.1-Pig4-TMW8060L10.5
        

               
Conread position:
               
212-624
               

               
Cow position:
               
chr12:31228774-31228363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
5, 12
               

               
Conread position:
               
217-559
               

               
Cow position:
               
chr12:19258462-19258133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
262, 26
               

               
Conread position:
               
217-569
               

               
Cow position:
               
chr12:34333301-34332957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
75, 26
               

               
Conread position:
               
217-630
               

               
Cow position:
               
chr12:42602050-42602457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
31, 15
               

               
Conread position:
               
218-626
               

               
Cow position:
               
chr12:30590955-30590563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
56, 84
               

               
Conread position:
               
218-626
               

               
Cow position:
               
chr12:35368830-35368430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
133, 59
               

               
Conread position:
               
218-630
               

               
Cow position:
               
chr12:44602695-44602286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
11, 109
               

               
Conread position:
               
221-426
               

               
Cow position:
               
chr12:43551031-43551235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
27, 118
               

               
Conread position:
               
222-447
               

               
Cow position:
               
chr12:29316280-29316496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
46, 71
               

               
Conread position:
               
222-590
               

               
Cow position:
               
chr12:38774065-38774420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
53, 21
               

               
Conread position:
               
222-626
               

               
Cow position:
               
chr12:18123850-18123473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 86
               

               
Conread position:
               
222-626
               

               
Cow position:
               
chr12:24663294-24662902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
308, 25
               

               
Conread position:
               
223-425
               

               
Cow position:
               
chr12:583320-583522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
13, 92
               

               
Conread position:
               
223-438
               

               
Cow position:
               
chr12:27430701-27430481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
52, 83
               

               
Conread position:
               
223-494
               

               
Cow position:
               
chr12:5839480-5839738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
9, 32
               

               
Conread position:
               
223-557
               

               
Cow position:
               
chr12:7110389-7110056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
49, 114
               

               
Conread position:
               
223-559
               

               
Cow position:
               
chr12:26217646-26217972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
52, 86
               

               
Conread position:
               
223-571
               

               
Cow position:
               
chr12:22284944-22285277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
52, 9
               

               
Conread position:
               
224-505
               

               
Cow position:
               
chr12:5554157-5554426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
49, 88
               

               
Conread position:
               
224-561
               

               
Cow position:
               
chr12:15089698-15089366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
20, 90
               

               
Conread position:
               
224-639
               

               
Cow position:
               
chr12:18420743-18421152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 8
               

               
Conread position:
               
225-479
               

               
Cow position:
               
chr12:46463872-46464133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
48, 156
               

               
Conread position:
               
225-624
               

               
Cow position:
               
chr12:9143565-9143182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 86
               

               
Conread position:
               
225-626
               

               
Cow position:
               
chr12:35770846-35771245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
303, 7
               

               
Conread position:
               
226-449
               

               
Cow position:
               
chr12:20355400-20355177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
48, 17
               

               
Conread position:
               
226-493
               

               
Cow position:
               
chr12:17252027-17252277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
46, 15
               

               
Conread position:
               
226-624
               

               
Cow position:
               
chr12:34148160-34148563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
11, 275
               

               
Conread position:
               
226-626
               

               
Cow position:
               
chr12:22882262-22881834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
7, 128
               

               
Conread position:
               
226-629
               

               
Cow position:
               
chr12:29770374-29770793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 204
               

               
Conread position:
               
227-414
               

               
Cow position:
               
chr12:15832381-15832192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
94, 16
               

               
Conread position:
               
227-438
               

               
Cow position:
               
chr12:4512273-4512475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
16, 84
               

               
Conread position:
               
227-525
               

               
Cow position:
               
chr12:18523762-18523453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
15, 48
               

               
Conread position:
               
227-626
               

               
Cow position:
               
chr12:15429416-15429813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 109
               

               
Conread position:
               
228-449
               

               
Cow position:
               
chr12:24437455-24437671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
15, 113
               

               
Conread position:
               
228-514
               

               
Cow position:
               
chr12:37514106-37514382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
228-619
               

               
Cow position:
               
chr12:44622536-44622144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 86
               

               
Conread position:
               
229-433
               

               
Cow position:
               
chr12:32392103-32391898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
77, 10
               

               
Conread position:
               
229-526
               

               
Cow position:
               
chr12:18582824-18583104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
230, 80
               

               
Conread position:
               
229-543
               

               
Cow position:
               
chr12:7884502-7884812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 86
               

               
Conread position:
               
229-558
               

               
Cow position:
               
chr12:34473433-34473769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
52, 177
               

               
Conread position:
               
229-559
               

               
Cow position:
               
chr12:9766704-9767020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 82
               

               
Conread position:
               
229-559
               

               
Cow position:
               
chr12:16670443-16670119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 84
               

               
Conread position:
               
229-560
               

               
Cow position:
               
chr12:10942470-10942142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
20, 82
               

               
Conread position:
               
229-569
               

               
Cow position:
               
chr12:46714549-46714217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
99, 119
               

               
Conread position:
               
231-571
               

               
Cow position:
               
chr12:37169774-37170101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
18, 66
               

               
Conread position:
               
232-423
               

               
Cow position:
               
chr12:4014249-4014443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
7, 77
               

               
Conread position:
               
232-536
               

               
Cow position:
               
chr12:11660099-11659805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
43, 74
               

               
Conread position:
               
232-539
               

               
Cow position:
               
chr12:7902633-7902928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
203, 41
               

               
Conread position:
               
232-570
               

               
Cow position:
               
chr12:12301100-12300764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
18, 77
               

               
Conread position:
               
232-571
               

               
Cow position:
               
chr12:42784481-42784149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
16, 64
               

               
Conread position:
               
232-626
               

               
Cow position:
               
chr12:25561538-25561157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
299, 46
               

               
Conread position:
               
232-626
               

               
Cow position:
               
chr12:30745888-30745500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
45, 80
               

               
Conread position:
               
233-421
               

               
Cow position:
               
chr12:2835576-2835397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
42, 79
               

               
Conread position:
               
233-528
               

               
Cow position:
               
chr12:31269329-31269037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
40, 77
               

               
Conread position:
               
233-585
               

               
Cow position:
               
chr12:15703323-15703672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
17, 81
               

               
Conread position:
               
233-626
               

               
Cow position:
               
chr12:33129426-33129051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 83
               

               
Conread position:
               
235-451
               

               
Cow position:
               
chr12:25456591-25456370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
235-590
               

               
Cow position:
               
chr12:42684765-42685127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
11, 81
               

               
Conread position:
               
236-626
               

               
Cow position:
               
chr12:19502247-19502633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
38, 11
               

               
Conread position:
               
237-501
               

               
Cow position:
               
chr12:36261861-36261602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
38, 77
               

               
Conread position:
               
237-624
               

               
Cow position:
               
chr12:41159747-41159379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
222, 6
               

               
Conread position:
               
239-449
               

               
Cow position:
               
chr12:6480812-6480604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
25, 81
               

               
Conread position:
               
239-449
               

               
Cow position:
               
chr12:14986912-14986713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
35, 73
               

               
Conread position:
               
239-450
               

               
Cow position:
               
chr12:23106104-23105900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
35, 67
               

               
Conread position:
               
239-510
               

               
Cow position:
               
chr12:39591466-39591740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
112, 15
               

               
Conread position:
               
239-619
               

               
Cow position:
               
chr12:18518837-18518456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 73
               

               
Conread position:
               
239-624
               

               
Cow position:
               
chr12:8943050-8943432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
41, 67
               

               
Conread position:
               
239-624
               

               
Cow position:
               
chr12:20776764-20777137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 68
               

               
Conread position:
               
239-626
               

               
Cow position:
               
chr12:6241489-6241096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
41, 76
               

               
Conread position:
               
239-626
               

               
Cow position:
               
chr12:27037251-27037662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 277
               

               
Conread position:
               
239-629
               

               
Cow position:
               
chr12:5801216-5800815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
112, 39
               

               
Conread position:
               
242-448
               

               
Cow position:
               
chr12:29731473-29731279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
30, 70
               

               
Conread position:
               
242-482
               

               
Cow position:
               
chr12:45167846-45168088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
242-521
               

               
Cow position:
               
chr12:19261357-19261086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
33, 74
               

               
Conread position:
               
242-570
               

               
Cow position:
               
chr12:15050463-15050774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
288, 62
               

               
Conread position:
               
242-626
               

               
Cow position:
               
chr12:10895392-10895761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
172, 24
               

               
Conread position:
               
243-590
               

               
Cow position:
               
chr12:30919595-30919240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
29, 72
               

               
Conread position:
               
243-615
               

               
Cow position:
               
chr12:33976364-33975998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
32, 69
               

               
Conread position:
               
243-616
               

               
Cow position:
               
chr12:9482141-9482505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
32, 69
               

               
Conread position:
               
243-626
               

               
Cow position:
               
chr12:6720509-6720106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 54
               

               
Conread position:
               
243-626
               

               
Cow position:
               
chr12:27563218-27563600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
289, 91
               

               
Conread position:
               
243-628
               

               
Cow position:
               
chr12:17080427-17080041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
32, 64
               

               
Conread position:
               
243-629
               

               
Cow position:
               
chr12:35310521-35310893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
31, 71
               

               
Conread position:
               
246-504
               

               
Cow position:
               
chr12:33949058-33948812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
30, 65
               

               
Conread position:
               
247-569
               

               
Cow position:
               
chr12:46120661-46120986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
27, 10
               

               
Conread position:
               
247-613
               

               
Cow position:
               
chr12:42879856-42879493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 65
               

               
Conread position:
               
247-625
               

               
Cow position:
               
chr12:32169703-32169324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 43
               

               
Conread position:
               
247-626
               

               
Cow position:
               
chr12:5635295-5635661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
28, 65
               

               
Conread position:
               
247-626
               

               
Cow position:
               
chr12:33851513-33851142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 63
               

               
Conread position:
               
249-536
               

               
Cow position:
               
chr12:48415365-48415636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
24, 60
               

               
Conread position:
               
249-555
               

               
Cow position:
               
chr12:22485968-22485677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
15, 46
               

               
Conread position:
               
249-626
               

               
Cow position:
               
chr12:18021033-18020640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 173
               

               
Conread position:
               
249-626
               

               
Cow position:
               
chr12:37993566-37993939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
7, 40
               

               
Conread position:
               
251-449
               

               
Cow position:
               
chr12:27572056-27572276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
251-622
               

               
Cow position:
               
chr12:35669319-35669680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
182, 34
               

               
Conread position:
               
255-605
               

               
Cow position:
               
chr12:23574919-23574574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
25, 94
               

               
Conread position:
               
259-420
               

               
Cow position:
               
chr12:24186332-24186497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
16, 158
               

               
Conread position:
               
259-513
               

               
Cow position:
               
chr12:24043011-24043266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
16, 53
               

               
Conread position:
               
270-622
               

               
Cow position:
               
chr12:19869609-19869257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
41, 109
               

               
Conread position:
               
270-626
               

               
Cow position:
               
chr12:4008149-4008494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
260, 33
               

               
Conread position:
               
292-624
               

               
Cow position:
               
chr12:3510688-3510352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
14, 110
               

               
Conread position:
               
299-626
               

               
Cow position:
               
chr12:32715159-32714829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 109
               

               
Conread position:
               
302-569
               

               
Cow position:
               
chr12:17774906-17774643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
49, 66
               

               
Conread position:
               
302-624
               

               
Cow position:
               
chr12:6410624-6410939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
49, 12
               

               
Conread position:
               
312-626
               

               
Cow position:
               
chr12:25321020-25320710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
27, 117
               

               
Conread position:
               
313-522
               

               
Cow position:
               
chr12:6235389-6235176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
317-511
               

               
Cow position:
               
chr12:30819338-30819145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
157, 36
               

               
Conread position:
               
317-616
               

               
Cow position:
               
chr12:36544543-36544856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
36, 49
               

               
Conread position:
               
319-626
               

               
Cow position:
               
chr12:3950247-3950564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
320-609
               

               
Cow position:
               
chr12:4769018-4768726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
155, 87
               

               
Conread position:
               
323-626
               

               
Cow position:
               
chr12:43942566-43942267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
63, 22
               

               
Conread position:
               
324-478
               

               
Cow position:
               
chr12:15260855-15260698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
23, 41
               

               
Conread position:
               
324-559
               

               
Cow position:
               
chr12:23916932-23916697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
27, 98
               

               
Conread position:
               
325-551
               

               
Cow position:
               
chr12:26777102-26777329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
32, 77
               

               
Conread position:
               
325-626
               

               
Cow position:
               
chr12:37770959-37770662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
26, 102
               

               
Conread position:
               
329-450
               

               
Cow position:
               
chr12:19371805-19371927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
335-626
               

               
Cow position:
               
chr12:19691153-19691449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
18, 82
               

               
Conread position:
               
337-537
               

               
Cow position:
               
chr12:1333309-1333106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
337-627
               

               
Cow position:
               
chr12:25452370-25452662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
17, 149
               

               
Conread position:
               
337-629
               

               
Cow position:
               
chr12:5906133-5905837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 221
               

               
Conread position:
               
337-630
               

               
Cow position:
               
chr12:30170743-30170450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 8
               

               
Conread position:
               
342-571
               

               
Cow position:
               
chr12:41215811-41216042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
23, 83
               

               
Conread position:
               
342-613
               

               
Cow position:
               
chr12:9914861-9914586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
9, 140
               

               
Conread position:
               
342-638
               

               
Cow position:
               
chr12:5714700-5714404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
188, 50
               

               
Conread position:
               
347-450
               

               
Cow position:
               
chr12:48578909-48578806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
104
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
347-560
               

               
Cow position:
               
chr12:26575962-26575738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
347-622
               

               
Cow position:
               
chr12:42967061-42966786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
146, 75
               

               
Conread position:
               
347-624
               

               
Cow position:
               
chr12:25917211-25917478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
104, 13
               

               
Conread position:
               
348-525
               

               
Cow position:
               
chr12:3371481-3371654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
103, 58
               

               
Conread position:
               
348-559
               

               
Cow position:
               
chr12:23446785-23446576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
137, 76
               

               
Conread position:
               
348-567
               

               
Cow position:
               
chr12:11587839-11587619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
166, 130
               

               
Conread position:
               
348-590
               

               
Cow position:
               
chr12:19507702-19507452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 214
               

               
Conread position:
               
348-609
               

               
Cow position:
               
chr12:1889513-1889780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
141, 108
               

               
Conread position:
               
348-609
               

               
Cow position:
               
chr12:31429506-31429770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
182, 80
               

               
Conread position:
               
348-612
               

               
Cow position:
               
chr12:33458212-33457942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
126, 86
               

               
Conread position:
               
348-622
               

               
Cow position:
               
chr12:28213574-28213304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
186, 44
               

               
Conread position:
               
348-623
               

               
Cow position:
               
chr12:47804221-47803945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
14, 22
               

               
Conread position:
               
348-626
               

               
Cow position:
               
chr12:27802985-27803263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
128, 164
               

               
Conread position:
               
348-626
               

               
Cow position:
               
chr12:30661885-30662162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
182, 117
               

               
Conread position:
               
348-639
               

               
Cow position:
               
chr12:39465644-39465353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 176
               

               
Conread position:
               
350-449
               

               
Cow position:
               
chr12:24166881-24166980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
100
               

               
Alignm identity:
               
82
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
350-471
               

               
Cow position:
               
chr12:27357450-27357330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
350-479
               

               
Cow position:
               
chr12:19274336-19274463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
350-484
               

               
Cow position:
               
chr12:26151398-26151531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
350-491
               

               
Cow position:
               
chr12:15641044-15641184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
72, 129
               

               
Conread position:
               
350-491
               

               
Cow position:
               
chr12:45092509-45092368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
350-521
               

               
Cow position:
               
chr12:33319605-33319774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
101, 107
               

               
Conread position:
               
350-526
               

               
Cow position:
               
chr12:6468997-6469174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
350-557
               

               
Cow position:
               
chr12:44202924-44203127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
101, 47
               

               
Conread position:
               
350-559
               

               
Cow position:
               
chr12:3197331-3197130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
350-559
               

               
Cow position:
               
chr12:24116300-24116510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
180, 101
               

               
Conread position:
               
350-560
               

               
Cow position:
               
chr12:24032559-24032354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
350-562
               

               
Cow position:
               
chr12:17269865-17269650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
109, 101
               

               
Conread position:
               
350-566
               

               
Cow position:
               
chr12:15173885-15173672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
140, 16
               

               
Conread position:
               
350-569
               

               
Cow position:
               
chr12:7299396-7299617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
7, 128
               

               
Conread position:
               
350-569
               

               
Cow position:
               
chr12:29779851-29780055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
350-569
               

               
Cow position:
               
chr12:46314641-46314855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
136, 78
               

               
Conread position:
               
350-571
               

               
Cow position:
               
chr12:34161476-34161258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
180, 90
               

               
Conread position:
               
350-581
               

               
Cow position:
               
chr12:4720009-4719774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
180, 16
               

               
Conread position:
               
350-588
               

               
Cow position:
               
chr12:15122389-15122142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 109
               

               
Conread position:
               
350-590
               

               
Cow position:
               
chr12:23855895-23855655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
180, 16
               

               
Conread position:
               
350-601
               

               
Cow position:
               
chr12:28582447-28582693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
180, 17
               

               
Conread position:
               
350-605
               

               
Cow position:
               
chr12:6488930-6489180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
223, 64
               

               
Conread position:
               
350-605
               

               
Cow position:
               
chr12:30805921-30805658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
44, 137
               

               
Conread position:
               
350-609
               

               
Cow position:
               
chr12:11836297-11836033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
350-609
               

               
Cow position:
               
chr12:17881924-17881662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
180, 131
               

               
Conread position:
               
350-610
               

               
Cow position:
               
chr12:12304443-12304190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
142, 66
               

               
Conread position:
               
350-611
               

               
Cow position:
               
chr12:6485150-6485408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
135, 66
               

               
Conread position:
               
350-612
               

               
Cow position:
               
chr12:17879239-17879505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
128, 42
               

               
Conread position:
               
350-613
               

               
Cow position:
               
chr12:15531117-15530854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
180, 32
               

               
Conread position:
               
350-616
               

               
Cow position:
               
chr12:18577903-18577642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 132
               

               
Conread position:
               
350-624
               

               
Cow position:
               
chr12:30605103-30605367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
223, 42
               

               
Conread position:
               
350-625
               

               
Cow position:
               
chr12:33323433-33323711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
178, 131
               

               
Conread position:
               
350-625
               

               
Cow position:
               
chr12:35378264-35377987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
101, 54
               

               
Conread position:
               
350-626
               

               
Cow position:
               
chr12:4162292-4162584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
37, 200
               

               
Conread position:
               
350-626
               

               
Cow position:
               
chr12:11056939-11056663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
44, 139
               

               
Conread position:
               
350-626
               

               
Cow position:
               
chr12:17001321-17001045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
178, 118
               

               
Conread position:
               
350-626
               

               
Cow position:
               
chr12:18765910-18766194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
135, 249
               

               
Conread position:
               
350-626
               

               
Cow position:
               
chr12:24211470-24211203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
220, 78
               

               
Conread position:
               
350-626
               

               
Cow position:
               
chr12:26222927-26223197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
223, 90
               

               
Conread position:
               
350-626
               

               
Cow position:
               
chr12:29995401-29995674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
180, 78
               

               
Conread position:
               
350-626
               

               
Cow position:
               
chr12:30210546-30210265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 150
               

               
Conread position:
               
350-626
               

               
Cow position:
               
chr12:31532341-31532617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
118, 71
               

               
Conread position:
               
350-626
               

               
Cow position:
               
chr12:42181066-42181354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
130, 0
               

               
Conread position:
               
350-626
               

               
Cow position:
               
chr12:44517675-44517949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
92, 98
               

               
Conread position:
               
350-627
               

               
Cow position:
               
chr12:5631819-5632088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
128, 63
               

               
Conread position:
               
350-627
               

               
Cow position:
               
chr12:18963865-18964143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
178, 125
               

               
Conread position:
               
350-629
               

               
Cow position:
               
chr12:18388228-18388502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
81, 17
               

               
Conread position:
               
350-630
               

               
Cow position:
               
chr12:5940404-5940126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
151, 74
               

               
Conread position:
               
350-630
               

               
Cow position:
               
chr12:8868819-8869097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
180, 58
               

               
Conread position:
               
350-630
               

               
Cow position:
               
chr12:17031677-17031394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 40
               

               
Conread position:
               
350-638
               

               
Cow position:
               
chr12:45820303-45820587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 180
               

               
Conread position:
               
351-609
               

               
Cow position:
               
chr12:41474151-41473891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
180, 157
               

               
Conread position:
               
351-625
               

               
Cow position:
               
chr12:29969641-29969364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
180, 130
               

               
Conread position:
               
351-626
               

               
Cow position:
               
chr12:25805070-25805323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
221, 92
               

               
Conread position:
               
352-609
               

               
Cow position:
               
chr12:6210097-6210357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
149, 130
               

               
Conread position:
               
352-626
               

               
Cow position:
               
chr12:23798160-23797890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
178, 62
               

               
Conread position:
               
352-626
               

               
Cow position:
               
chr12:31959940-31959681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
250, 70
               

               
Conread position:
               
353-545
               

               
Cow position:
               
chr12:3092520-3092705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
177, 120
               

               
Conread position:
               
353-560
               

               
Cow position:
               
chr12:11090476-11090280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
354-565
               

               
Cow position:
               
chr12:47193965-47194166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
356-646
               

               
Cow position:
               
chr12:730883-731170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
12, 18
               

               
Conread position:
               
363-559
               

               
Cow position:
               
chr12:12637133-12637331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
123, 118
               

               
Conread position:
               
367-626
               

               
Cow position:
               
chr12:45363407-45363144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
193, 158
               

               
Conread position:
               
368-541
               

               
Cow position:
               
chr12:18023380-18023560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
79, 160
               

               
Conread position:
               
368-558
               

               
Cow position:
               
chr12:6102783-6102972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
138, 74
               

               
Conread position:
               
368-571
               

               
Cow position:
               
chr12:41658680-41658881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
160, 97
               

               
Conread position:
               
368-616
               

               
Cow position:
               
chr12:9710163-9710415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
163, 129
               

               
Conread position:
               
368-622
               

               
Cow position:
               
chr12:19508514-19508781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
369-626
               

               
Cow position:
               
chr12:22515688-22515953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
370-622
               

               
Cow position:
               
chr12:31948161-31947909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
30, 102
               

               
Conread position:
               
373-639
               

               
Cow position:
               
chr12:3906513-3906243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
69, 55
               

               
Conread position:
               
374-622
               

               
Cow position:
               
chr12:38454945-38454704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
198, 30
               

               
Conread position:
               
375-612
               

               
Cow position:
               
chr12:28471685-28471436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
24, 94
               

               
Conread position:
               
376-605
               

               
Cow position:
               
chr12:18550918-18550686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
75, 129
               

               
Conread position:
               
386-626
               

               
Cow position:
               
chr12:20326801-20326557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
56, 84
               

               
Conread position:
               
397-607
               

               
Cow position:
               
chr12:26317481-26317265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
402-626
               

               
Cow position:
               
chr12:6164011-6164242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
430-609
               

               
Cow position:
               
chr12:4116472-4116293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
143, 57
               

               
Conread position:
               
430-622
               

               
Cow position:
               
chr12:29411506-29411698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
143, 154
               

               
Conread position:
               
444-626
               

               
Cow position:
               
chr12:17702257-17702446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
7, 17
               

               
Conread position:
               
462-626
               

               
Cow position:
               
chr12:17008155-17007984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
68, 26
               
Show alignments to all cow chromosomes.