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Cow genome map

           
Conread name:
           
Ss1.1-Pig4-TMW8061H12.3
        

               
Conread position:
               
315-646
               

               
Cow position:
               
chr29:8926224-8926568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
96, 5
               

               
Conread position:
               
332-681
               

               
Cow position:
               
chr29:11397711-11398063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 19
               

               
Conread position:
               
334-631
               

               
Cow position:
               
chr29:9310811-9310527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
44, 32
               

               
Conread position:
               
335-571
               

               
Cow position:
               
chr29:31934583-31934354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
44, 34
               

               
Conread position:
               
335-680
               

               
Cow position:
               
chr29:22175897-22175549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
73, 34
               

               
Conread position:
               
336-661
               

               
Cow position:
               
chr29:26017294-26017623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
42, 33
               

               
Conread position:
               
336-684
               

               
Cow position:
               
chr29:1395780-1395453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
12, 35
               

               
Conread position:
               
344-684
               

               
Cow position:
               
chr29:30441137-30440782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
25, 71
               

               
Conread position:
               
345-555
               

               
Cow position:
               
chr29:22729762-22729559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
37, 25
               

               
Conread position:
               
345-657
               

               
Cow position:
               
chr29:21443144-21443457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
100, 21
               

               
Conread position:
               
345-675
               

               
Cow position:
               
chr29:4479970-4480306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
36, 24
               

               
Conread position:
               
346-669
               

               
Cow position:
               
chr29:40583981-40583665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
38, 23
               

               
Conread position:
               
346-681
               

               
Cow position:
               
chr29:24952883-24952548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 24
               

               
Conread position:
               
346-681
               

               
Cow position:
               
chr29:31929182-31928841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
36, 20
               

               
Conread position:
               
347-614
               

               
Cow position:
               
chr29:29324226-29324487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
35, 9
               

               
Conread position:
               
347-621
               

               
Cow position:
               
chr29:22518926-22519210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
63, 22
               

               
Conread position:
               
347-648
               

               
Cow position:
               
chr29:27668459-27668770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
35, 22
               

               
Conread position:
               
347-658
               

               
Cow position:
               
chr29:13028645-13028321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
32, 22
               

               
Conread position:
               
347-675
               

               
Cow position:
               
chr29:44378212-44378553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
35, 22
               

               
Conread position:
               
347-681
               

               
Cow position:
               
chr29:1325641-1325301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
35, 16
               

               
Conread position:
               
347-681
               

               
Cow position:
               
chr29:19762458-19762136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
36, 22
               

               
Conread position:
               
347-681
               

               
Cow position:
               
chr29:25737225-25737558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
36, 8
               

               
Conread position:
               
348-549
               

               
Cow position:
               
chr29:26631243-26631038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
30, 21
               

               
Conread position:
               
348-571
               

               
Cow position:
               
chr29:24187869-24188090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
28, 78
               

               
Conread position:
               
348-582
               

               
Cow position:
               
chr29:19949499-19949272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
27, 18
               

               
Conread position:
               
348-616
               

               
Cow position:
               
chr29:21645511-21645249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
25, 136
               

               
Conread position:
               
348-650
               

               
Cow position:
               
chr29:5046847-5046543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
31, 21
               

               
Conread position:
               
348-664
               

               
Cow position:
               
chr29:38581186-38580854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 171
               

               
Conread position:
               
348-665
               

               
Cow position:
               
chr29:40994685-40995016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
34, 21
               

               
Conread position:
               
348-673
               

               
Cow position:
               
chr29:5893040-5892716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
35, 21
               

               
Conread position:
               
348-675
               

               
Cow position:
               
chr29:17297332-17296997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
34, 18
               

               
Conread position:
               
348-675
               

               
Cow position:
               
chr29:34745467-34745795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
223, 33
               

               
Conread position:
               
348-675
               

               
Cow position:
               
chr29:41531045-41530716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
32, 22
               

               
Conread position:
               
348-678
               

               
Cow position:
               
chr29:17110147-17109831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
35, 65
               

               
Conread position:
               
348-680
               

               
Cow position:
               
chr29:40891513-40891837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
35, 16
               

               
Conread position:
               
348-681
               

               
Cow position:
               
chr29:3711570-3711245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
34, 21
               

               
Conread position:
               
348-681
               

               
Cow position:
               
chr29:24624435-24624111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
64, 18
               

               
Conread position:
               
348-681
               

               
Cow position:
               
chr29:25092298-25091972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
29, 21
               

               
Conread position:
               
348-684
               

               
Cow position:
               
chr29:23698164-23697832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
31, 21
               

               
Conread position:
               
348-684
               

               
Cow position:
               
chr29:36220737-36220384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
34, 18
               

               
Conread position:
               
349-548
               

               
Cow position:
               
chr29:629730-629536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
349-630
               

               
Cow position:
               
chr29:13373514-13373210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
349-681
               

               
Cow position:
               
chr29:7955795-7956124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
20, 77
               

               
Conread position:
               
349-681
               

               
Cow position:
               
chr29:12680351-12680018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
33, 20
               

               
Conread position:
               
349-681
               

               
Cow position:
               
chr29:31489517-31489181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
33, 20
               

               
Conread position:
               
349-681
               

               
Cow position:
               
chr29:37618501-37618166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
33, 20
               

               
Conread position:
               
350-571
               

               
Cow position:
               
chr29:15947361-15947142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
32, 16
               

               
Conread position:
               
350-603
               

               
Cow position:
               
chr29:501393-501137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
32, 40
               

               
Conread position:
               
350-679
               

               
Cow position:
               
chr29:32799511-32799850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
30, 19
               

               
Conread position:
               
350-680
               

               
Cow position:
               
chr29:27858980-27858653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
61, 19
               

               
Conread position:
               
351-636
               

               
Cow position:
               
chr29:2262790-2263092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
28, 15
               

               
Conread position:
               
355-680
               

               
Cow position:
               
chr29:34744444-34744756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
216, 14
               

               
Conread position:
               
368-681
               

               
Cow position:
               
chr29:40097131-40096820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
175, 36
               

               
Conread position:
               
372-621
               

               
Cow position:
               
chr29:8004747-8005003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
43, 145
               

               
Conread position:
               
381-534
               

               
Cow position:
               
chr29:33393846-33393690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
381-563
               

               
Cow position:
               
chr29:24051220-24051398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
381-581
               

               
Cow position:
               
chr29:5520326-5520519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
381-658
               

               
Cow position:
               
chr29:25475091-25474803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
381-658
               

               
Cow position:
               
chr29:28775305-28775574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
189, 21
               

               
Conread position:
               
381-675
               

               
Cow position:
               
chr29:16609908-16609607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
203, 31
               

               
Conread position:
               
381-675
               

               
Cow position:
               
chr29:35084064-35084357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
198, 31
               

               
Conread position:
               
381-675
               

               
Cow position:
               
chr29:35677383-35677684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
180, 31
               

               
Conread position:
               
381-675
               

               
Cow position:
               
chr29:38582128-38581841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
196, 31
               

               
Conread position:
               
381-679
               

               
Cow position:
               
chr29:13639205-13639508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 21
               

               
Conread position:
               
381-681
               

               
Cow position:
               
chr29:11915977-11915680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
123, 21
               

               
Conread position:
               
381-681
               

               
Cow position:
               
chr29:12783797-12784097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 107
               

               
Conread position:
               
381-681
               

               
Cow position:
               
chr29:29057334-29057041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
190, 21
               

               
Conread position:
               
386-670
               

               
Cow position:
               
chr29:34358824-34359109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
56, 18
               

               
Conread position:
               
386-682
               

               
Cow position:
               
chr29:17222569-17222271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
72, 7
               

               
Conread position:
               
387-675
               

               
Cow position:
               
chr29:2744117-2744406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
187, 25
               

               
Conread position:
               
402-681
               

               
Cow position:
               
chr29:4367868-4367580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
52, 24
               

               
Conread position:
               
402-681
               

               
Cow position:
               
chr29:37960833-37961118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
19, 25
               

               
Conread position:
               
405-681
               

               
Cow position:
               
chr29:43496183-43495914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
16, 112
               

               
Conread position:
               
406-681
               

               
Cow position:
               
chr29:356460-356185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
13, 21
               

               
Conread position:
               
407-675
               

               
Cow position:
               
chr29:39329463-39329728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
35, 167
               

               
Conread position:
               
407-680
               

               
Cow position:
               
chr29:749769-750046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
166, 30
               

               
Conread position:
               
407-681
               

               
Cow position:
               
chr29:6293344-6293616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
163, 17
               

               
Conread position:
               
407-681
               

               
Cow position:
               
chr29:16195977-16195709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
166, 16
               

               
Conread position:
               
407-681
               

               
Cow position:
               
chr29:23243738-23244020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
35, 151
               

               
Conread position:
               
407-681
               

               
Cow position:
               
chr29:24252369-24252098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
167, 26
               

               
Conread position:
               
407-682
               

               
Cow position:
               
chr29:1022437-1022152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
31, 43
               

               
Conread position:
               
408-582
               

               
Cow position:
               
chr29:5210630-5210456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
36, 99
               

               
Conread position:
               
408-652
               

               
Cow position:
               
chr29:18403978-18404224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
26, 98
               

               
Conread position:
               
408-675
               

               
Cow position:
               
chr29:40298883-40299146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
246, 25
               

               
Conread position:
               
408-679
               

               
Cow position:
               
chr29:26416490-26416222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
30, 106
               

               
Conread position:
               
408-681
               

               
Cow position:
               
chr29:29314521-29314795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
34, 54
               

               
Conread position:
               
409-629
               

               
Cow position:
               
chr29:31814075-31813860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
33, 14
               

               
Conread position:
               
409-681
               

               
Cow position:
               
chr29:6844498-6844771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
109, 17
               

               
Conread position:
               
415-673
               

               
Cow position:
               
chr29:45005497-45005757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
27, 107
               

               
Conread position:
               
415-675
               

               
Cow position:
               
chr29:25088874-25088619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
160, 94
               

               
Conread position:
               
415-681
               

               
Cow position:
               
chr29:109812-109567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
156, 11
               

               
Conread position:
               
415-681
               

               
Cow position:
               
chr29:4520466-4520195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
26, 36
               

               
Conread position:
               
415-681
               

               
Cow position:
               
chr29:12025346-12025611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
159, 18
               

               
Conread position:
               
415-681
               

               
Cow position:
               
chr29:29512009-29512280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
166, 237
               

               
Conread position:
               
415-681
               

               
Cow position:
               
chr29:32210939-32211196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
27, 94
               

               
Conread position:
               
416-681
               

               
Cow position:
               
chr29:11705240-11704985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
155, 15
               

               
Conread position:
               
418-681
               

               
Cow position:
               
chr29:8669482-8669226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
155, 59
               

               
Conread position:
               
419-658
               

               
Cow position:
               
chr29:42886670-42886439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
171, 0
               

               
Conread position:
               
419-681
               

               
Cow position:
               
chr29:11053732-11054000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
23, 100
               

               
Conread position:
               
419-681
               

               
Cow position:
               
chr29:34359694-34359942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
23, 7
               

               
Conread position:
               
420-571
               

               
Cow position:
               
chr29:4423311-4423464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
420-580
               

               
Cow position:
               
chr29:31981961-31981797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
420-644
               

               
Cow position:
               
chr29:24578990-24578755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
420-654
               

               
Cow position:
               
chr29:7310802-7310575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
15, 78
               

               
Conread position:
               
420-680
               

               
Cow position:
               
chr29:28979374-28979622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
18, 102
               

               
Conread position:
               
420-681
               

               
Cow position:
               
chr29:22162122-22162393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
420-681
               

               
Cow position:
               
chr29:28195394-28195654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 101
               

               
Conread position:
               
420-681
               

               
Cow position:
               
chr29:35501524-35501791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
19, 196
               

               
Conread position:
               
420-683
               

               
Cow position:
               
chr29:28196880-28197148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
18, 40
               

               
Conread position:
               
421-681
               

               
Cow position:
               
chr29:6337790-6337520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
49, 22
               

               
Conread position:
               
422-586
               

               
Cow position:
               
chr29:5789154-5788990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
20, 81
               

               
Conread position:
               
422-684
               

               
Cow position:
               
chr29:37599097-37599351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
148, 11
               

               
Conread position:
               
423-681
               

               
Cow position:
               
chr29:13126998-13127262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
76, 14
               

               
Conread position:
               
426-629
               

               
Cow position:
               
chr29:28993983-28993772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
426-679
               

               
Cow position:
               
chr29:463532-463792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
48, 33
               

               
Conread position:
               
426-682
               

               
Cow position:
               
chr29:39567803-39567546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
20, 95
               

               
Conread position:
               
427-570
               

               
Cow position:
               
chr29:27819337-27819195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
427-658
               

               
Cow position:
               
chr29:706837-707064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
15, 25
               

               
Conread position:
               
427-664
               

               
Cow position:
               
chr29:22936391-22936145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
15, 104
               

               
Conread position:
               
427-681
               

               
Cow position:
               
chr29:19428778-19428518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
64, 6
               

               
Conread position:
               
427-681
               

               
Cow position:
               
chr29:29475131-29475392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
29, 170
               

               
Conread position:
               
427-684
               

               
Cow position:
               
chr29:6217425-6217691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
15, 67
               

               
Conread position:
               
429-675
               

               
Cow position:
               
chr29:34297451-34297699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
133, 231
               

               
Conread position:
               
430-658
               

               
Cow position:
               
chr29:4444833-4444598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
140, 7
               

               
Conread position:
               
430-681
               

               
Cow position:
               
chr29:11366349-11366100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
135, 7
               

               
Conread position:
               
431-658
               

               
Cow position:
               
chr29:3685397-3685630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
38, 66
               

               
Conread position:
               
431-678
               

               
Cow position:
               
chr29:10653448-10653209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
11, 91
               

               
Conread position:
               
431-679
               

               
Cow position:
               
chr29:35442346-35442600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
10, 130
               

               
Conread position:
               
431-681
               

               
Cow position:
               
chr29:9912290-9912032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
140, 30
               

               
Conread position:
               
431-681
               

               
Cow position:
               
chr29:11434235-11433982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
10, 189
               

               
Conread position:
               
431-681
               

               
Cow position:
               
chr29:16657811-16657548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
11, 26
               

               
Conread position:
               
431-681
               

               
Cow position:
               
chr29:39111198-39111455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
11, 25
               

               
Conread position:
               
433-616
               

               
Cow position:
               
chr29:7103671-7103480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
137, 0
               

               
Conread position:
               
433-627
               

               
Cow position:
               
chr29:32894376-32894182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
433-664
               

               
Cow position:
               
chr29:9512374-9512145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
9, 127
               

               
Conread position:
               
433-671
               

               
Cow position:
               
chr29:29176504-29176745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
135, 82
               

               
Conread position:
               
433-676
               

               
Cow position:
               
chr29:18021569-18021813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
9, 197
               

               
Conread position:
               
434-642
               

               
Cow position:
               
chr29:693897-694102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
437-600
               

               
Cow position:
               
chr29:43544494-43544661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
134, 101
               

               
Conread position:
               
437-626
               

               
Cow position:
               
chr29:13867101-13867297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
437-650
               

               
Cow position:
               
chr29:847533-847750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
61, 89
               

               
Conread position:
               
437-660
               

               
Cow position:
               
chr29:8862372-8862599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
139, 71
               

               
Conread position:
               
437-673
               

               
Cow position:
               
chr29:25333352-25333593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
131, 71
               

               
Conread position:
               
437-680
               

               
Cow position:
               
chr29:21706291-21706529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
158, 24
               

               
Conread position:
               
437-680
               

               
Cow position:
               
chr29:34773627-34773873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
41, 84
               

               
Conread position:
               
437-680
               

               
Cow position:
               
chr29:43251056-43251306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
24, 168
               

               
Conread position:
               
437-681
               

               
Cow position:
               
chr29:4085418-4085179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
219, 83
               

               
Conread position:
               
437-681
               

               
Cow position:
               
chr29:6286052-6286299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
437-681
               

               
Cow position:
               
chr29:9709804-9709556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
107, 233
               

               
Conread position:
               
437-681
               

               
Cow position:
               
chr29:13372772-13372525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
137, 20
               

               
Conread position:
               
437-681
               

               
Cow position:
               
chr29:17409444-17409191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
147, 0
               

               
Conread position:
               
437-681
               

               
Cow position:
               
chr29:22778064-22778318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
40, 76
               

               
Conread position:
               
437-681
               

               
Cow position:
               
chr29:28166113-28166353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
124, 83
               

               
Conread position:
               
437-681
               

               
Cow position:
               
chr29:29769242-29769491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
60, 74
               

               
Conread position:
               
437-681
               

               
Cow position:
               
chr29:31926191-31926430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
135, 27
               

               
Conread position:
               
437-681
               

               
Cow position:
               
chr29:32963646-32963418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
437-681
               

               
Cow position:
               
chr29:36217221-36216977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
135, 81
               

               
Conread position:
               
437-684
               

               
Cow position:
               
chr29:2056170-2055914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
438-661
               

               
Cow position:
               
chr29:21196541-21196770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
104, 204
               

               
Conread position:
               
438-661
               

               
Cow position:
               
chr29:27873709-27873485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
132, 158
               

               
Conread position:
               
438-679
               

               
Cow position:
               
chr29:13634190-13634435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
81, 46
               

               
Conread position:
               
438-681
               

               
Cow position:
               
chr29:35292201-35291950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
73, 198
               

               
Conread position:
               
439-681
               

               
Cow position:
               
chr29:24292976-24292728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
22, 193
               

               
Conread position:
               
439-681
               

               
Cow position:
               
chr29:26653937-26654177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
88, 140
               

               
Conread position:
               
440-580
               

               
Cow position:
               
chr29:30918655-30918516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
440-658
               

               
Cow position:
               
chr29:12625870-12626096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
130, 0
               

               
Conread position:
               
440-680
               

               
Cow position:
               
chr29:17154884-17154628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
130, 74
               

               
Conread position:
               
441-551
               

               
Cow position:
               
chr29:19244354-19244464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
441-673
               

               
Cow position:
               
chr29:5947701-5947923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
162, 39
               

               
Conread position:
               
442-678
               

               
Cow position:
               
chr29:40853032-40852799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
128, 174
               

               
Conread position:
               
443-681
               

               
Cow position:
               
chr29:4334821-4334587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
128, 65
               

               
Conread position:
               
444-581
               

               
Cow position:
               
chr29:8686432-8686294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
444-656
               

               
Cow position:
               
chr29:32290711-32290493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
444-680
               

               
Cow position:
               
chr29:27329994-27329753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
126, 15
               

               
Conread position:
               
444-681
               

               
Cow position:
               
chr29:19821385-19821147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
126, 71
               

               
Conread position:
               
445-681
               

               
Cow position:
               
chr29:28868744-28868496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
66, 170
               

               
Conread position:
               
446-681
               

               
Cow position:
               
chr29:2984990-2984744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
128, 62
               

               
Conread position:
               
447-681
               

               
Cow position:
               
chr29:10235035-10235269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
124, 75
               

               
Conread position:
               
447-684
               

               
Cow position:
               
chr29:9638221-9638461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
130, 0
               

               
Conread position:
               
447-684
               

               
Cow position:
               
chr29:16309840-16309599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
124, 27
               

               
Conread position:
               
448-679
               

               
Cow position:
               
chr29:5186395-5186633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
125, 178
               

               
Conread position:
               
449-679
               

               
Cow position:
               
chr29:709037-709259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
186, 12
               

               
Conread position:
               
449-681
               

               
Cow position:
               
chr29:23983858-23984099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
450-582
               

               
Cow position:
               
chr29:19558923-19559054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
454-673
               

               
Cow position:
               
chr29:26263928-26263716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
125, 110
               

               
Conread position:
               
455-680
               

               
Cow position:
               
chr29:30188261-30188479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
201, 64
               

               
Conread position:
               
456-679
               

               
Cow position:
               
chr29:15940540-15940771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
116, 213
               

               
Conread position:
               
456-681
               

               
Cow position:
               
chr29:41365199-41364970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
118, 44
               

               
Conread position:
               
456-681
               

               
Cow position:
               
chr29:44682014-44682237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
101, 122
               

               
Conread position:
               
457-681
               

               
Cow position:
               
chr29:868864-868633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
457-681
               

               
Cow position:
               
chr29:26319254-26319043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
467-681
               

               
Cow position:
               
chr29:17668566-17668359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
103, 53
               

               
Conread position:
               
471-681
               

               
Cow position:
               
chr29:3100192-3100398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
188, 102
               

               
Conread position:
               
474-680
               

               
Cow position:
               
chr29:465327-465536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
89, 167
               

               
Conread position:
               
478-681
               

               
Cow position:
               
chr29:6926073-6925872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
92, 46
               

               
Conread position:
               
481-670
               

               
Cow position:
               
chr29:2071506-2071703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
481-677
               

               
Cow position:
               
chr29:36183346-36183145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
481-681
               

               
Cow position:
               
chr29:40337472-40337667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
482-629
               

               
Cow position:
               
chr29:13487015-13486861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
482-680
               

               
Cow position:
               
chr29:19389542-19389345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
175, 96
               

               
Conread position:
               
489-681
               

               
Cow position:
               
chr29:17301591-17301389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
508-658
               

               
Cow position:
               
chr29:12004724-12004881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
514-684
               

               
Cow position:
               
chr29:29558401-29558571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
62, 31
               

               
Conread position:
               
529-661
               

               
Cow position:
               
chr29:26206881-26206748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
533-680
               

               
Cow position:
               
chr29:45384140-45383986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
541-681
               

               
Cow position:
               
chr29:16757060-16756918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
35, 58
               

               
Conread position:
               
547-681
               

               
Cow position:
               
chr29:37292778-37292638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
569-681
               

               
Cow position:
               
chr29:3396078-3395966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               
Show alignments to all cow chromosomes.