Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8062A10.5 |
| Conread position: | 456-759 |
| Cow position: | chr10:16698822-16699119 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 222 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 59, 11 |
| Conread position: | 456-812 |
| Cow position: | chr10:50728772-50728419 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 241 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 59, 8 |
| Conread position: | 467-845 |
| Cow position: | chr10:50565457-50565852 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 156 |
| Conread position: | 471-699 |
| Cow position: | chr10:38367145-38366920 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 54, 9 |
| Conread position: | 475-774 |
| Cow position: | chr10:64156654-64156345 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 40, 18 |
| Conread position: | 477-838 |
| Cow position: | chr10:41118237-41118608 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 288, 20 |
| Conread position: | 478-838 |
| Cow position: | chr10:34730118-34730495 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 265 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 59, 51 |
| Conread position: | 479-850 |
| Cow position: | chr10:55142979-55143365 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 268 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 241, 63 |
| Conread position: | 490-751 |
| Cow position: | chr10:9882941-9883185 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 44, 21 |
| Conread position: | 490-753 |
| Cow position: | chr10:21341058-21341321 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 490-838 |
| Cow position: | chr10:58684757-58685114 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 244 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 137, 55 |
| Conread position: | 492-835 |
| Cow position: | chr10:21010872-21010532 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 253 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 273, 26 |
| Conread position: | 493-838 |
| Cow position: | chr10:14606462-14606119 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 250 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 174, 32 |
| Conread position: | 494-766 |
| Cow position: | chr10:23074889-23075159 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 194 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 5, 75 |
| Conread position: | 494-767 |
| Cow position: | chr10:30820541-30820272 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 209 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 20, 32 |
| Conread position: | 499-718 |
| Cow position: | chr10:14615535-14615323 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 165 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 21, 51 |
| Conread position: | 499-724 |
| Cow position: | chr10:59524410-59524630 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 166 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 27, 134 |
| Conread position: | 503-710 |
| Cow position: | chr10:36297822-36297618 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 14, 27 |
| Conread position: | 503-769 |
| Cow position: | chr10:3825855-3826125 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 199 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 12, 27 |
| Conread position: | 503-786 |
| Cow position: | chr10:16980021-16979751 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 90, 103 |
| Conread position: | 503-838 |
| Cow position: | chr10:48450704-48450366 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 24 |
| Conread position: | 504-769 |
| Cow position: | chr10:65205746-65206010 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 11, 29 |
| Conread position: | 505-680 |
| Cow position: | chr10:21394194-21394367 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 36, 41 |
| Conread position: | 509-763 |
| Cow position: | chr10:14894297-14894544 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 189 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 221, 160 |
| Conread position: | 511-657 |
| Cow position: | chr10:67156953-67156804 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 127, 140 |
| Conread position: | 511-768 |
| Cow position: | chr10:3873422-3873678 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 157, 57 |
| Conread position: | 511-787 |
| Cow position: | chr10:30615433-30615722 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 218 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 7, 15 |
| Conread position: | 521-838 |
| Cow position: | chr10:60963426-60963098 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 10 |
| Conread position: | 524-671 |
| Cow position: | chr10:53822442-53822295 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 524-838 |
| Cow position: | chr10:9372374-9372703 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 16 |
| Conread position: | 525-838 |
| Cow position: | chr10:55103132-55103447 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 201, 27 |
| Conread position: | 527-769 |
| Cow position: | chr10:64208466-64208701 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 17, 9 |
| Conread position: | 529-763 |
| Cow position: | chr10:52670953-52670712 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 9, 140 |
| Conread position: | 531-774 |
| Cow position: | chr10:56916407-56916649 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 182 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 219, 156 |
| Conread position: | 532-702 |
| Cow position: | chr10:36790541-36790376 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 532-838 |
| Cow position: | chr10:55116291-55116599 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 111 |
| Conread position: | 533-838 |
| Cow position: | chr10:9108830-9109146 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 60 |
| Conread position: | 533-838 |
| Cow position: | chr10:23451821-23451500 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 185 |
| Conread position: | 534-767 |
| Cow position: | chr10:55117677-55117915 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 138, 175 |
| Conread position: | 535-838 |
| Cow position: | chr10:16899814-16900130 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 33 |
| Conread position: | 536-767 |
| Cow position: | chr10:28416810-28416578 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 184 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 41, 106 |
| Conread position: | 536-838 |
| Cow position: | chr10:26289216-26288898 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 43 |
| Conread position: | 545-773 |
| Cow position: | chr10:41273708-41273940 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 178 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 10, 185 |
| Conread position: | 547-767 |
| Cow position: | chr10:41269464-41269679 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 205, 107 |
| Conread position: | 547-838 |
| Cow position: | chr10:50463604-50463309 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 84 |
| Conread position: | 549-767 |
| Cow position: | chr10:9371985-9372193 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 549-774 |
| Cow position: | chr10:50356179-50355962 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 164, 78 |
| Conread position: | 553-838 |
| Cow position: | chr10:29706883-29707177 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 195 |
| Conread position: | 554-679 |
| Cow position: | chr10:45268463-45268335 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 555-724 |
| Cow position: | chr10:38835174-38835341 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 555-754 |
| Cow position: | chr10:32750652-32750843 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 107, 35 |
| Conread position: | 555-822 |
| Cow position: | chr10:41265777-41266055 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 171 |
| Conread position: | 561-767 |
| Cow position: | chr10:55059223-55059433 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 11, 35 |
| Conread position: | 562-663 |
| Cow position: | chr10:31164310-31164411 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 85 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 571-774 |
| Cow position: | chr10:25503217-25503014 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 162, 101 |
| Conread position: | 572-745 |
| Cow position: | chr10:60340031-60339861 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 127 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 134, 108 |
| Conread position: | 573-752 |
| Cow position: | chr10:67877240-67877419 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 574-838 |
| Cow position: | chr10:67883422-67883675 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 140, 106 |
| Conread position: | 578-680 |
| Cow position: | chr10:14607052-14607155 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 88 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 578-724 |
| Cow position: | chr10:9117608-9117749 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 579-763 |
| Cow position: | chr10:31870-31685 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 148 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 580-838 |
| Cow position: | chr10:39612064-39612346 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 207 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 92, 124 |
| Conread position: | 608-841 |
| Cow position: | chr10:15168235-15168490 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 613-772 |
| Cow position: | chr10:14610761-14610920 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 107, 65 |
| Conread position: | 613-835 |
| Cow position: | chr10:27253942-27254174 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 169 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 140, 67 |
| Conread position: | 626-835 |
| Cow position: | chr10:41281467-41281690 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 127, 100 |
| Conread position: | 627-834 |
| Cow position: | chr10:67156656-67156434 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 11, 123 |
| Conread position: | 633-835 |
| Cow position: | chr10:50564454-50564669 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 173 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 635-838 |
| Cow position: | chr10:27753968-27754170 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 94, 10 |
| Conread position: | 663-838 |
| Cow position: | chr10:53822087-53821898 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 15, 77 |
Show alignments to all cow chromosomes.