Cow genome map

Conread name: Ss1.1-Pig4-TMW8062A10.5

Conread position: 373-769
Cow position: chr11:50040353-50040751 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 11

Conread position: 383-810
Cow position: chr11:18139480-18139038 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 396

Conread position: 411-838
Cow position: chr11:19228092-19228520 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 296
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 65, 56

Conread position: 416-676
Cow position: chr11:25356091-25355839 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 188
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 139, 18

Conread position: 443-765
Cow position: chr11:65479784-65479468 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 223
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 93, 28

Conread position: 444-833
Cow position: chr11:31815254-31815625 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 259
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 17, 42

Conread position: 460-835
Cow position: chr11:64035046-64035425 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 6

Conread position: 468-835
Cow position: chr11:58354708-58355072 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 271
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 9, 143

Conread position: 475-661
Cow position: chr11:6887246-6887063 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 141
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 18, 0

Conread position: 475-835
Cow position: chr11:71161916-71161545 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 18

Conread position: 477-740
Cow position: chr11:37318333-37318597 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 255, 0

Conread position: 478-767
Cow position: chr11:12336533-12336236 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 219
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 78, 41

Conread position: 479-714
Cow position: chr11:81837598-81837830 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 167
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 216, 14

Conread position: 479-838
Cow position: chr11:3612369-3612722 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 292, 14

Conread position: 480-725
Cow position: chr11:41226273-41226029 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 184
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 36, 46

Conread position: 486-667
Cow position: chr11:35616993-35616812 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 134
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 7, 17

Conread position: 490-695
Cow position: chr11:70694098-70694309 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 152
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 23, 36

Conread position: 490-698
Cow position: chr11:35745515-35745718 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 157
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 26, 37

Conread position: 490-805
Cow position: chr11:11396501-11396817 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 224
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 44, 37

Conread position: 490-822
Cow position: chr11:65753239-65752884 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 0

Conread position: 490-838
Cow position: chr11:14191593-14191229 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 77

Conread position: 490-838
Cow position: chr11:36397153-36397505 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 200, 34

Conread position: 490-838
Cow position: chr11:37328161-37328505 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 263, 173

Conread position: 492-839
Cow position: chr11:83266375-83266024 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 234
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 72, 26

Conread position: 493-725
Cow position: chr11:48074040-48074274 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 174
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 127, 27

Conread position: 502-750
Cow position: chr11:6752780-6753025 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 225, 23

Conread position: 502-838
Cow position: chr11:12320823-12320466 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 0

Conread position: 503-754
Cow position: chr11:59969522-59969775 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 0

Conread position: 503-769
Cow position: chr11:72345174-72344912 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 28

Conread position: 503-830
Cow position: chr11:32075566-32075891 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 286, 26

Conread position: 503-838
Cow position: chr11:8557181-8557528 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 224, 33

Conread position: 503-838
Cow position: chr11:18180112-18179782 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 236
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 259, 176

Conread position: 504-680
Cow position: chr11:40512324-40512149 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 135
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 11, 29

Conread position: 504-759
Cow position: chr11:30473936-30474191 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 33

Conread position: 505-754
Cow position: chr11:3743777-3744023 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 182
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 12, 25

Conread position: 509-769
Cow position: chr11:83086503-83086756 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 194
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 6, 24

Conread position: 509-774
Cow position: chr11:85701659-85701928 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 202
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 15, 47

Conread position: 510-676
Cow position: chr11:55183680-55183515 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 125
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 9, 0

Conread position: 518-834
Cow position: chr11:75129799-75129473 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 305

Conread position: 520-724
Cow position: chr11:83551547-83551750 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 155
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 154, 12

Conread position: 521-664
Cow position: chr11:68169533-68169383 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 115
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 117, 34

Conread position: 521-676
Cow position: chr11:40582673-40582524 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 121
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 8, 0

Conread position: 524-838
Cow position: chr11:63667014-63667337 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 210, 28

Conread position: 525-657
Cow position: chr11:33190085-33189953 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 99
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 527-749
Cow position: chr11:45820923-45821146 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 174
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 51, 209

Conread position: 529-730
Cow position: chr11:433159-433355 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 156
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 190, 58

Conread position: 529-756
Cow position: chr11:47884899-47885121 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 178
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 225, 143

Conread position: 529-769
Cow position: chr11:59989457-59989206 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 192
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 139, 191

Conread position: 529-774
Cow position: chr11:2895013-2894768 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 183
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 225, 7

Conread position: 529-774
Cow position: chr11:61469413-61469660 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 183
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 100, 116

Conread position: 531-754
Cow position: chr11:37724344-37724124 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 23

Conread position: 531-838
Cow position: chr11:63283167-63283481 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 124

Conread position: 532-802
Cow position: chr11:58355591-58355853 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 197
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 79, 0

Conread position: 539-725
Cow position: chr11:30220292-30220479 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 145
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 5, 14

Conread position: 543-765
Cow position: chr11:45492416-45492643 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 177
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 5, 188

Conread position: 545-834
Cow position: chr11:75202533-75202234 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 210, 7

Conread position: 547-832
Cow position: chr11:33442368-33442669 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 212
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 179, 76

Conread position: 548-838
Cow position: chr11:14678025-14678316 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 98

Conread position: 549-688
Cow position: chr11:3716017-3715879 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 106
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 130, 10

Conread position: 549-764
Cow position: chr11:7005463-7005677 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 151
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 12, 0

Conread position: 549-774
Cow position: chr11:31402474-31402259 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 158
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 168, 14

Conread position: 549-786
Cow position: chr11:37136601-37136835 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 179
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 166, 106

Conread position: 552-766
Cow position: chr11:30923475-30923266 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 152
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 128, 10

Conread position: 552-768
Cow position: chr11:9715852-9715639 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 150
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 97, 10

Conread position: 552-834
Cow position: chr11:31771170-31770881 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 201
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 128, 10

Conread position: 552-838
Cow position: chr11:32770464-32770757 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 212
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 170, 125

Conread position: 554-686
Cow position: chr11:41030294-41030160 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 107
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 25, 73

Conread position: 555-748
Cow position: chr11:63238227-63238418 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 147
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 162, 105

Conread position: 555-761
Cow position: chr11:7066910-7066700 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 150
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 46, 175

Conread position: 555-834
Cow position: chr11:31398435-31398713 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 204
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 164, 88

Conread position: 555-834
Cow position: chr11:31815995-31816284 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 217
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 140, 97

Conread position: 558-773
Cow position: chr11:68237065-68236849 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 162
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 159, 37

Conread position: 562-769
Cow position: chr11:8237390-8237188 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 150
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 193, 92

Conread position: 563-774
Cow position: chr11:49009888-49009677 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 155
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 154, 101

Conread position: 571-701
Cow position: chr11:75167763-75167633 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 108
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 571-834
Cow position: chr11:2068846-2069118 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 208
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 189, 18

Conread position: 573-769
Cow position: chr11:7549213-7549023 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 146
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 123, 0

Conread position: 579-759
Cow position: chr11:51805559-51805739 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 132
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 579-838
Cow position: chr11:52785847-52785579 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 64

Conread position: 590-743
Cow position: chr11:8306535-8306386 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 126
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 85, 0

Conread position: 590-822
Cow position: chr11:86667095-86667333 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 173
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 143, 69

Conread position: 591-838
Cow position: chr11:31348408-31348671 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 205
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 82, 152

Conread position: 597-802
Cow position: chr11:6419199-6418989 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 163
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 7, 0

Conread position: 628-838
Cow position: chr11:27300168-27300373 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 155
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 127, 144

Conread position: 632-767
Cow position: chr11:7066086-7065948 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 109
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 85, 46

Conread position: 634-759
Cow position: chr11:70684160-70684286 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 99
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 5, 0

Conread position: 640-765
Cow position: chr11:2891918-2891793 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 108
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 640-769
Cow position: chr11:31887231-31887360 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 100
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.