Cow genome map

Conread name: Ss1.1-Pig4-TMW8062A10.5

Conread position: 411-838
Cow position: chr13:6063108-6063537 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 31

Conread position: 456-769
Cow position: chr13:30335698-30335390 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 227
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 59, 8

Conread position: 457-698
Cow position: chr13:43783863-43784101 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 173
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 18, 7

Conread position: 457-743
Cow position: chr13:30325074-30324793 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 270, 7

Conread position: 463-838
Cow position: chr13:54409124-54409519 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 14

Conread position: 466-838
Cow position: chr13:5245035-5244670 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 55

Conread position: 468-671
Cow position: chr13:27710736-27710936 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 141
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 25, 0

Conread position: 473-691
Cow position: chr13:50784783-50784997 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 158
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 79, 0

Conread position: 478-838
Cow position: chr13:22109110-22109462 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 42

Conread position: 478-838
Cow position: chr13:22169811-22170163 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 42

Conread position: 479-735
Cow position: chr13:54346233-54345981 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 190
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 227, 14

Conread position: 480-682
Cow position: chr13:24633416-24633622 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 155
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 26, 75

Conread position: 480-684
Cow position: chr13:34872670-34872472 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 148
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 79, 13

Conread position: 489-748
Cow position: chr13:47665731-47665459 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 194
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 5, 22

Conread position: 490-717
Cow position: chr13:10002983-10003207 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 160
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 66, 166

Conread position: 490-767
Cow position: chr13:60239953-60240224 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 199
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 102, 28

Conread position: 490-769
Cow position: chr13:52852315-52852036 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 36

Conread position: 491-724
Cow position: chr13:49625193-49624968 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 170
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 24, 35

Conread position: 491-838
Cow position: chr13:52328947-52328591 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 39

Conread position: 492-754
Cow position: chr13:15310401-15310658 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 12

Conread position: 493-724
Cow position: chr13:52693558-52693333 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 175
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 25, 34

Conread position: 493-754
Cow position: chr13:2780870-2780615 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 9

Conread position: 499-845
Cow position: chr13:52184057-52184427 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 351

Conread position: 502-767
Cow position: chr13:5610396-5610663 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 225, 0

Conread position: 503-630
Cow position: chr13:20806532-20806659 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 99
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 12, 27

Conread position: 503-748
Cow position: chr13:18860439-18860196 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 176, 128

Conread position: 503-748
Cow position: chr13:31488716-31488953 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 183
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 12, 27

Conread position: 503-753
Cow position: chr13:13556956-13557203 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 185
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 135, 0

Conread position: 503-769
Cow position: chr13:14863769-14863507 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 28

Conread position: 503-769
Cow position: chr13:34189979-34189713 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 251, 103

Conread position: 503-769
Cow position: chr13:49454239-49454502 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 247, 177

Conread position: 503-769
Cow position: chr13:50787332-50787066 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 27

Conread position: 503-774
Cow position: chr13:52849599-52849876 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 205
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 43, 176

Conread position: 503-828
Cow position: chr13:42124272-42124609 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 246
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 38, 43

Conread position: 503-838
Cow position: chr13:42101900-42101548 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 0

Conread position: 504-838
Cow position: chr13:36820275-36820620 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 24

Conread position: 505-833
Cow position: chr13:14726626-14726294 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 41

Conread position: 509-724
Cow position: chr13:15347877-15348093 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 167
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 9, 17

Conread position: 520-677
Cow position: chr13:57386092-57385935 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 115
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 527-838
Cow position: chr13:4802653-4802349 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 219
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 30, 130

Conread position: 529-755
Cow position: chr13:14574532-14574306 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 39

Conread position: 529-768
Cow position: chr13:54718550-54718787 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 224, 159

Conread position: 529-838
Cow position: chr13:26005103-26005427 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 184

Conread position: 529-838
Cow position: chr13:41690852-41691170 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 230
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 211, 95

Conread position: 529-841
Cow position: chr13:5249605-5249280 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 0

Conread position: 530-774
Cow position: chr13:17580945-17580697 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 182
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 153, 65

Conread position: 531-834
Cow position: chr13:31483141-31483455 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 40

Conread position: 531-840
Cow position: chr13:722870-722557 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 224, 143

Conread position: 532-768
Cow position: chr13:17121529-17121291 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 184
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 0

Conread position: 532-834
Cow position: chr13:22108275-22108579 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 13

Conread position: 532-834
Cow position: chr13:22169007-22169306 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 13

Conread position: 532-835
Cow position: chr13:14917756-14917446 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 0

Conread position: 534-671
Cow position: chr13:19329135-19329273 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 107
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 24, 58

Conread position: 545-726
Cow position: chr13:49710746-49710922 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 140
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 78, 107

Conread position: 545-769
Cow position: chr13:26324882-26324665 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 174
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 22, 146

Conread position: 546-838
Cow position: chr13:50813477-50813785 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 181

Conread position: 549-752
Cow position: chr13:26935024-26935223 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 159
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 146, 106

Conread position: 549-754
Cow position: chr13:50117344-50117549 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 162
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 562-768
Cow position: chr13:13800084-13800290 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 166
Alignm E-value: 0
Alignm gaps (pig, cow): 191, 102

Conread position: 571-671
Cow position: chr13:23125043-23125143 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 83
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 571-748
Cow position: chr13:55380451-55380626 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 142
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 131, 0

Conread position: 571-768
Cow position: chr13:13559595-13559402 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 159
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 104, 0

Conread position: 574-738
Cow position: chr13:47305110-47305270 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 129
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 153, 37

Conread position: 574-767
Cow position: chr13:8427620-8427425 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 144
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 100, 135

Conread position: 574-838
Cow position: chr13:1902307-1902036 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 201
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 173, 107

Conread position: 578-838
Cow position: chr13:33006445-33006720 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 0

Conread position: 582-740
Cow position: chr13:22948018-22948175 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 126
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 85, 0

Conread position: 612-769
Cow position: chr13:1597510-1597668 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 129
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 142, 0

Conread position: 627-769
Cow position: chr13:27505636-27505500 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 109
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 107, 52

Show alignments to all cow chromosomes.