Cow genome map

Conread name: Ss1.1-Pig4-TMW8062A10.5

Conread position: 386-838
Cow position: chr14:5569730-5570183 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 76

Conread position: 411-838
Cow position: chr14:47013903-47013465 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 32

Conread position: 457-752
Cow position: chr14:2343523-2343810 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 7

Conread position: 457-763
Cow position: chr14:5357175-5356858 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 7

Conread position: 457-841
Cow position: chr14:2279358-2278949 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 7

Conread position: 466-763
Cow position: chr14:23755262-23754977 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 55

Conread position: 467-774
Cow position: chr14:7149519-7149217 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 11

Conread position: 468-671
Cow position: chr14:18439127-18439332 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 157
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 12, 0

Conread position: 480-774
Cow position: chr14:8456447-8456756 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 220
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 37, 151

Conread position: 484-838
Cow position: chr14:38359732-38359376 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 44

Conread position: 488-838
Cow position: chr14:20887648-20887288 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 52

Conread position: 489-838
Cow position: chr14:18579084-18579446 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 230, 36

Conread position: 490-672
Cow position: chr14:8458122-8458312 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 143
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 28, 0

Conread position: 490-769
Cow position: chr14:50468820-50468535 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 237, 35

Conread position: 490-774
Cow position: chr14:13722503-13722231 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 196
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 28, 45

Conread position: 490-834
Cow position: chr14:7115737-7116108 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 29

Conread position: 490-838
Cow position: chr14:23148669-23149027 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 242, 62

Conread position: 490-841
Cow position: chr14:37249915-37249555 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 27

Conread position: 491-668
Cow position: chr14:4234194-4234373 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 128
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 166, 34

Conread position: 491-765
Cow position: chr14:11076189-11075914 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 208
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 24, 11

Conread position: 492-769
Cow position: chr14:45731368-45731095 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 203
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 24, 11

Conread position: 492-838
Cow position: chr14:16517696-16517339 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 263, 76

Conread position: 499-769
Cow position: chr14:44539422-44539149 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 196
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 153, 30

Conread position: 499-835
Cow position: chr14:33534554-33534220 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 226
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 268, 30

Conread position: 501-724
Cow position: chr14:33436561-33436336 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 171
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 33, 17

Conread position: 503-738
Cow position: chr14:17394596-17394836 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 178
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 52, 0

Conread position: 503-753
Cow position: chr14:10082084-10081834 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 503-762
Cow position: chr14:26257679-26257425 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 187
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 12, 25

Conread position: 503-769
Cow position: chr14:40014236-40013975 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 188
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 12, 27

Conread position: 503-835
Cow position: chr14:23149711-23150064 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 170, 0

Conread position: 503-838
Cow position: chr14:12246593-12246945 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 50

Conread position: 503-838
Cow position: chr14:32728926-32728598 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 229
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 65, 142

Conread position: 504-745
Cow position: chr14:19838459-19838699 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 181
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 51, 65

Conread position: 504-754
Cow position: chr14:45594401-45594651 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 24

Conread position: 504-761
Cow position: chr14:1068769-1068513 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 185
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 40, 25

Conread position: 504-762
Cow position: chr14:26260862-26260609 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 186
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 11, 24

Conread position: 504-821
Cow position: chr14:45733778-45734099 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 225
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 51, 65

Conread position: 504-838
Cow position: chr14:15756925-15756575 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 26

Conread position: 505-838
Cow position: chr14:26194536-26194192 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 240
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 56, 27

Conread position: 510-700
Cow position: chr14:10489007-10488817 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 149
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 45, 8

Conread position: 513-772
Cow position: chr14:47152020-47151749 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 200
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 209, 16

Conread position: 520-724
Cow position: chr14:4722364-4722564 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 157
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 177, 127

Conread position: 529-748
Cow position: chr14:16026476-16026258 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 165
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 39, 0

Conread position: 529-755
Cow position: chr14:1533996-1533770 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 166
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 39, 25

Conread position: 530-774
Cow position: chr14:28755250-28755016 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 178
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 156, 30

Conread position: 532-769
Cow position: chr14:13153442-13153201 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 182
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 26, 0

Conread position: 532-838
Cow position: chr14:45779964-45780282 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 176, 151

Conread position: 534-838
Cow position: chr14:26040534-26040853 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 219, 0

Conread position: 539-751
Cow position: chr14:3703100-3703315 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 169
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 5, 50

Conread position: 547-724
Cow position: chr14:25503298-25503124 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 136
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 169, 5

Conread position: 549-697
Cow position: chr14:21681666-21681819 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 117
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 89, 64

Conread position: 549-718
Cow position: chr14:34097013-34097179 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 127
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 150, 0

Conread position: 552-769
Cow position: chr14:8037375-8037167 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 164
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 61, 0

Conread position: 553-828
Cow position: chr14:1858246-1857956 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 214
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 90, 58

Conread position: 559-834
Cow position: chr14:43375614-43375904 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 202
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 11, 115

Conread position: 559-838
Cow position: chr14:20883146-20883439 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 213
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 167, 114

Conread position: 571-838
Cow position: chr14:11104361-11104632 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 97

Conread position: 578-713
Cow position: chr14:30647829-30647697 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 103
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 100, 0

Conread position: 578-838
Cow position: chr14:25935501-25935232 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 199
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 159, 0

Conread position: 579-680
Cow position: chr14:11074917-11075018 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 92
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 579-769
Cow position: chr14:1505937-1505743 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 140
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 110, 149

Conread position: 584-834
Cow position: chr14:20887795-20888039 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 132

Conread position: 585-768
Cow position: chr14:48757813-48757630 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 132
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 135, 147

Conread position: 603-838
Cow position: chr14:25504614-25504364 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 191
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 36, 86

Conread position: 621-835
Cow position: chr14:20690346-20690113 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 175
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 51, 65

Conread position: 621-838
Cow position: chr14:18428783-18429009 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 170
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 133, 34

Conread position: 630-838
Cow position: chr14:2316665-2316874 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 149
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 119, 96

Conread position: 641-838
Cow position: chr14:26264883-26265097 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 160
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 38, 0

Show alignments to all cow chromosomes.