Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8062A10.5 |
| Conread position: | 444-838 |
| Cow position: | chr15:26624928-26624525 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 284 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 17, 42 |
| Conread position: | 466-698 |
| Cow position: | chr15:34436576-34436340 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 176 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 466-769 |
| Cow position: | chr15:22336750-22337069 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 189 |
| Conread position: | 470-656 |
| Cow position: | chr15:46340372-46340557 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 64, 10 |
| Conread position: | 471-838 |
| Cow position: | chr15:43655238-43654853 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 262 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 54, 20 |
| Conread position: | 474-631 |
| Cow position: | chr15:5224778-5224933 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 41, 100 |
| Conread position: | 480-838 |
| Cow position: | chr15:42382119-42381745 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 332 |
| Conread position: | 483-838 |
| Cow position: | chr15:29274094-29273738 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 255 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 54, 47 |
| Conread position: | 485-753 |
| Cow position: | chr15:26133531-26133799 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 241, 64 |
| Conread position: | 490-748 |
| Cow position: | chr15:9369781-9370035 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 166 |
| Conread position: | 490-765 |
| Cow position: | chr15:52822990-52822706 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 60, 43 |
| Conread position: | 490-769 |
| Cow position: | chr15:30559682-30559957 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 236, 0 |
| Conread position: | 491-724 |
| Cow position: | chr15:6654056-6653826 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 11, 40 |
| Conread position: | 499-838 |
| Cow position: | chr15:30945485-30945146 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 240, 26 |
| Conread position: | 503-767 |
| Cow position: | chr15:1037073-1036809 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 12, 40 |
| Conread position: | 503-834 |
| Cow position: | chr15:26304719-26304389 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 241 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 12, 27 |
| Conread position: | 503-838 |
| Cow position: | chr15:14494645-14494296 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 244 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 16, 315 |
| Conread position: | 504-748 |
| Cow position: | chr15:44902375-44902615 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 0 |
| Conread position: | 509-720 |
| Cow position: | chr15:42289009-42288798 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 167 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 200 |
| Conread position: | 510-767 |
| Cow position: | chr15:39568724-39568987 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 195 |
| Conread position: | 510-838 |
| Cow position: | chr15:11730402-11730074 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 245 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 224, 42 |
| Conread position: | 524-695 |
| Cow position: | chr15:9183071-9182909 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 32, 12 |
| Conread position: | 524-699 |
| Cow position: | chr15:22931260-22931085 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 13, 135 |
| Conread position: | 524-764 |
| Cow position: | chr15:14088589-14088832 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 154 |
| Conread position: | 529-740 |
| Cow position: | chr15:22092999-22093203 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 169 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 198, 168 |
| Conread position: | 529-753 |
| Cow position: | chr15:52163571-52163801 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 145, 120 |
| Conread position: | 529-769 |
| Cow position: | chr15:14219257-14219016 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 43 |
| Conread position: | 529-822 |
| Cow position: | chr15:5000986-5000702 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 216 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 222, 78 |
| Conread position: | 532-672 |
| Cow position: | chr15:18638791-18638929 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 109 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 532-693 |
| Cow position: | chr15:29596736-29596574 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 532-769 |
| Cow position: | chr15:433076-433309 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 200, 161 |
| Conread position: | 532-773 |
| Cow position: | chr15:11676985-11676742 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 180 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 23, 166 |
| Conread position: | 534-834 |
| Cow position: | chr15:4332517-4332827 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 226 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 21, 121 |
| Conread position: | 540-745 |
| Cow position: | chr15:28977410-28977211 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 9, 117 |
| Conread position: | 544-821 |
| Cow position: | chr15:25895807-25895527 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 196 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 173, 87 |
| Conread position: | 548-782 |
| Cow position: | chr15:10748272-10748505 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 180, 89 |
| Conread position: | 548-835 |
| Cow position: | chr15:22486242-22486528 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 125, 70 |
| Conread position: | 552-768 |
| Cow position: | chr15:6115487-6115700 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 128, 10 |
| Conread position: | 552-774 |
| Cow position: | chr15:18639960-18640179 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 145, 32 |
| Conread position: | 552-838 |
| Cow position: | chr15:16444552-16444829 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 209, 163 |
| Conread position: | 553-676 |
| Cow position: | chr15:233334-233211 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 95 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 554-774 |
| Cow position: | chr15:44903611-44903407 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 200, 64 |
| Conread position: | 555-753 |
| Cow position: | chr15:5274421-5274230 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 130, 97 |
| Conread position: | 561-748 |
| Cow position: | chr15:44962870-44963054 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 147 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 565-830 |
| Cow position: | chr15:52816715-52816449 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 80, 50 |
| Conread position: | 571-769 |
| Cow position: | chr15:9277718-9277527 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 160 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 161, 73 |
| Conread position: | 571-838 |
| Cow position: | chr15:23339421-23339145 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 189 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 70, 89 |
| Conread position: | 574-838 |
| Cow position: | chr15:23281493-23281229 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 74 |
| Conread position: | 578-764 |
| Cow position: | chr15:42257094-42257275 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 578-769 |
| Cow position: | chr15:28614593-28614404 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 142, 74 |
| Conread position: | 579-838 |
| Cow position: | chr15:13718179-13718448 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 195 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 116, 158 |
| Conread position: | 581-838 |
| Cow position: | chr15:50104504-50104232 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 146, 115 |
| Conread position: | 583-838 |
| Cow position: | chr15:33849401-33849667 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 93, 55 |
| Conread position: | 585-774 |
| Cow position: | chr15:41208149-41208334 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 151 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 165, 89 |
| Conread position: | 590-767 |
| Cow position: | chr15:40490302-40490490 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 143 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 103, 170 |
| Conread position: | 591-838 |
| Cow position: | chr15:14861647-14861894 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 141, 81 |
| Conread position: | 595-838 |
| Cow position: | chr15:25075948-25076198 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 192 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 22, 27 |
| Conread position: | 615-764 |
| Cow position: | chr15:5225121-5225267 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 112, 9 |
| Conread position: | 618-835 |
| Cow position: | chr15:33891960-33891735 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 157 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 623-774 |
| Cow position: | chr15:36110491-36110343 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 116 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 137, 51 |
| Conread position: | 628-769 |
| Cow position: | chr15:45797806-45797666 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 127, 62 |
| Conread position: | 631-838 |
| Cow position: | chr15:6918871-6918662 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 122, 50 |
| Conread position: | 636-838 |
| Cow position: | chr15:39802880-39803092 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 119, 0 |
Show alignments to all cow chromosomes.