Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8062A10.5 |
| Conread position: | 456-759 |
| Cow position: | chr16:37225747-37225450 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 217 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 59, 8 |
| Conread position: | 457-838 |
| Cow position: | chr16:16599814-16600198 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 7 |
| Conread position: | 465-828 |
| Cow position: | chr16:15682336-15681977 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 60 |
| Conread position: | 467-688 |
| Cow position: | chr16:52775641-52775425 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 48, 27 |
| Conread position: | 476-835 |
| Cow position: | chr16:19491631-19491277 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 249 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 251, 50 |
| Conread position: | 477-701 |
| Cow position: | chr16:15914088-15913864 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 161 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 9, 28 |
| Conread position: | 477-838 |
| Cow position: | chr16:29661311-29661673 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 266 |
| Conread position: | 479-698 |
| Cow position: | chr16:39021067-39021282 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 479-835 |
| Cow position: | chr16:49208603-49208241 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 256 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 253, 14 |
| Conread position: | 483-774 |
| Cow position: | chr16:27275152-27274866 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 0 |
| Conread position: | 484-838 |
| Cow position: | chr16:13925077-13924703 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 259 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 56, 45 |
| Conread position: | 485-621 |
| Cow position: | chr16:11171523-11171658 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 485-670 |
| Cow position: | chr16:35280650-35280834 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 17, 68 |
| Conread position: | 490-717 |
| Cow position: | chr16:4614428-4614655 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 44, 142 |
| Conread position: | 490-724 |
| Cow position: | chr16:17749557-17749331 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 174 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 28, 40 |
| Conread position: | 490-834 |
| Cow position: | chr16:40516639-40516293 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 237, 35 |
| Conread position: | 490-835 |
| Cow position: | chr16:56078710-56079067 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 64 |
| Conread position: | 491-666 |
| Cow position: | chr16:53617591-53617417 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 84, 42 |
| Conread position: | 491-695 |
| Cow position: | chr16:11166618-11166827 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 27, 39 |
| Conread position: | 491-754 |
| Cow position: | chr16:45133056-45132783 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 24, 11 |
| Conread position: | 491-834 |
| Cow position: | chr16:228687-229015 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 43, 169 |
| Conread position: | 492-674 |
| Cow position: | chr16:31133203-31133385 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 150 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 492-774 |
| Cow position: | chr16:15669200-15668921 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 125 |
| Conread position: | 492-787 |
| Cow position: | chr16:13497259-13496965 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 211 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 24, 133 |
| Conread position: | 499-682 |
| Cow position: | chr16:30655028-30655208 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 130, 21 |
| Conread position: | 499-838 |
| Cow position: | chr16:29626395-29626044 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 27 |
| Conread position: | 503-636 |
| Cow position: | chr16:40518180-40518047 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 12, 27 |
| Conread position: | 503-756 |
| Cow position: | chr16:4396507-4396766 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 12, 27 |
| Conread position: | 503-835 |
| Cow position: | chr16:31531098-31531441 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 251, 15 |
| Conread position: | 503-843 |
| Cow position: | chr16:23846700-23846388 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 235 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 268, 49 |
| Conread position: | 504-710 |
| Cow position: | chr16:5651168-5651376 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 51, 32 |
| Conread position: | 504-710 |
| Cow position: | chr16:56975782-56975577 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 504-714 |
| Cow position: | chr16:46709988-46709775 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 11, 24 |
| Conread position: | 504-769 |
| Cow position: | chr16:24173774-24173507 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 23 |
| Conread position: | 504-769 |
| Cow position: | chr16:47871510-47871244 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 32 |
| Conread position: | 510-818 |
| Cow position: | chr16:33644385-33644063 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 219, 0 |
| Conread position: | 520-769 |
| Cow position: | chr16:40128567-40128832 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 521-833 |
| Cow position: | chr16:21558080-21558411 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 0 |
| Conread position: | 521-838 |
| Cow position: | chr16:2249869-2250196 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 229, 37 |
| Conread position: | 523-838 |
| Cow position: | chr16:48889942-48889627 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 9, 180 |
| Conread position: | 526-838 |
| Cow position: | chr16:54014714-54015033 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 229 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 239, 142 |
| Conread position: | 529-769 |
| Cow position: | chr16:18054477-18054718 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 0 |
| Conread position: | 529-825 |
| Cow position: | chr16:8920132-8919836 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 191, 138 |
| Conread position: | 530-838 |
| Cow position: | chr16:3850620-3850319 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 217 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 275, 110 |
| Conread position: | 531-748 |
| Cow position: | chr16:15433812-15434029 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 532-763 |
| Cow position: | chr16:47743000-47743234 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 178 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 23, 41 |
| Conread position: | 533-671 |
| Cow position: | chr16:10641807-10641947 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 109 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 5, 21 |
| Conread position: | 534-700 |
| Cow position: | chr16:40507509-40507345 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 534-714 |
| Cow position: | chr16:40122022-40122205 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 148 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 534-754 |
| Cow position: | chr16:21979980-21979760 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 122 |
| Conread position: | 540-768 |
| Cow position: | chr16:33439847-33440072 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 5 |
| Conread position: | 545-753 |
| Cow position: | chr16:30829655-30829447 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 161 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 12, 32 |
| Conread position: | 545-838 |
| Cow position: | chr16:34613889-34614195 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 101, 52 |
| Conread position: | 548-696 |
| Cow position: | chr16:27174385-27174234 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 549-748 |
| Cow position: | chr16:46161808-46162002 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 168, 106 |
| Conread position: | 549-768 |
| Cow position: | chr16:13109071-13108855 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 168, 14 |
| Conread position: | 549-774 |
| Cow position: | chr16:54743185-54743410 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 166 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 134, 14 |
| Conread position: | 552-680 |
| Cow position: | chr16:56202645-56202774 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 552-828 |
| Cow position: | chr16:31539584-31539856 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 128, 10 |
| Conread position: | 552-838 |
| Cow position: | chr16:23948119-23948418 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 223 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 154, 128 |
| Conread position: | 554-774 |
| Cow position: | chr16:47184933-47185148 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 170 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 206, 18 |
| Conread position: | 555-755 |
| Cow position: | chr16:2522263-2522460 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 186, 58 |
| Conread position: | 557-691 |
| Cow position: | chr16:54303583-54303722 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 81, 15 |
| Conread position: | 557-838 |
| Cow position: | chr16:7391400-7391117 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 60, 13 |
| Conread position: | 558-817 |
| Cow position: | chr16:10629562-10629811 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 249, 88 |
| Conread position: | 562-838 |
| Cow position: | chr16:53198413-53198125 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 55 |
| Conread position: | 568-705 |
| Cow position: | chr16:33907057-33906921 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 106 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 570-756 |
| Cow position: | chr16:10668197-10668390 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 156 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 104, 65 |
| Conread position: | 571-701 |
| Cow position: | chr16:45600706-45600836 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 112 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 583-838 |
| Cow position: | chr16:9954956-9955224 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 75, 41 |
| Conread position: | 584-765 |
| Cow position: | chr16:12114076-12114253 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 153 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 584-838 |
| Cow position: | chr16:40503004-40502741 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 177, 51 |
| Conread position: | 586-769 |
| Cow position: | chr16:49979105-49979289 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 156 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 0 |
| Conread position: | 587-825 |
| Cow position: | chr16:19492875-19492632 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 140, 73 |
| Conread position: | 590-838 |
| Cow position: | chr16:31529142-31529409 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 612-769 |
| Cow position: | chr16:11171864-11172024 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 625-769 |
| Cow position: | chr16:23946518-23946663 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 628-769 |
| Cow position: | chr16:28198543-28198402 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 125, 67 |
| Conread position: | 629-838 |
| Cow position: | chr16:54017089-54017314 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 164 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 119, 159 |
Show alignments to all cow chromosomes.