Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8062A10.5 |
| Conread position: | 457-703 |
| Cow position: | chr18:48004416-48004661 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 20, 7 |
| Conread position: | 457-744 |
| Cow position: | chr18:21611938-21611652 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 7 |
| Conread position: | 465-838 |
| Cow position: | chr18:4495073-4494691 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 20 |
| Conread position: | 469-769 |
| Cow position: | chr18:4471732-4472020 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 221 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 49, 8 |
| Conread position: | 479-838 |
| Cow position: | chr18:52708512-52708873 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 14 |
| Conread position: | 480-769 |
| Cow position: | chr18:49646863-49646576 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 206 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 57, 44 |
| Conread position: | 482-790 |
| Cow position: | chr18:4937377-4937679 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 86 |
| Conread position: | 486-804 |
| Cow position: | chr18:32401287-32401608 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 51, 186 |
| Conread position: | 490-721 |
| Cow position: | chr18:44215062-44215291 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 28, 40 |
| Conread position: | 490-769 |
| Cow position: | chr18:2117159-2116876 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 490-838 |
| Cow position: | chr18:52393362-52392995 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 252 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 46, 190 |
| Conread position: | 492-689 |
| Cow position: | chr18:1707952-1707757 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 25, 38 |
| Conread position: | 498-838 |
| Cow position: | chr18:51389405-51389067 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 219, 27 |
| Conread position: | 499-769 |
| Cow position: | chr18:42735058-42735323 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 202 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 15, 27 |
| Conread position: | 503-769 |
| Cow position: | chr18:52707393-52707128 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 503-835 |
| Cow position: | chr18:55146091-55145744 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 191 |
| Conread position: | 503-838 |
| Cow position: | chr18:14139893-14140227 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 26 |
| Conread position: | 504-698 |
| Cow position: | chr18:31955043-31954853 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 11, 26 |
| Conread position: | 504-748 |
| Cow position: | chr18:17221023-17220770 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 22 |
| Conread position: | 504-748 |
| Cow position: | chr18:17235671-17235418 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 22 |
| Conread position: | 505-838 |
| Cow position: | chr18:8340980-8340636 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 254, 119 |
| Conread position: | 509-769 |
| Cow position: | chr18:8691726-8691464 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 199 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 48, 27 |
| Conread position: | 525-769 |
| Cow position: | chr18:25088811-25089035 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 31, 70 |
| Conread position: | 525-839 |
| Cow position: | chr18:38308889-38308567 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 529-710 |
| Cow position: | chr18:30979191-30979009 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 7, 175 |
| Conread position: | 529-774 |
| Cow position: | chr18:21737356-21737110 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 0 |
| Conread position: | 531-768 |
| Cow position: | chr18:43243558-43243797 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 0 |
| Conread position: | 533-746 |
| Cow position: | chr18:56216517-56216729 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 25, 36 |
| Conread position: | 533-751 |
| Cow position: | chr18:880387-880604 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 16, 47 |
| Conread position: | 536-838 |
| Cow position: | chr18:10486287-10486592 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 81 |
| Conread position: | 538-769 |
| Cow position: | chr18:24796195-24796426 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 34 |
| Conread position: | 547-838 |
| Cow position: | chr18:4480793-4481099 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 225 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 77, 140 |
| Conread position: | 549-754 |
| Cow position: | chr18:54163335-54163133 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 123, 13 |
| Conread position: | 555-754 |
| Cow position: | chr18:45654826-45655025 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 134, 106 |
| Conread position: | 555-838 |
| Cow position: | chr18:2697494-2697783 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 213 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 216, 13 |
| Conread position: | 557-724 |
| Cow position: | chr18:22418731-22418896 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 557-739 |
| Cow position: | chr18:25086413-25086596 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 150 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 15, 63 |
| Conread position: | 571-699 |
| Cow position: | chr18:14704719-14704840 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 571-767 |
| Cow position: | chr18:7111692-7111882 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 571-769 |
| Cow position: | chr18:16071718-16071918 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 150 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 155, 0 |
| Conread position: | 574-745 |
| Cow position: | chr18:22877043-22877211 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 138 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 143, 0 |
| Conread position: | 578-724 |
| Cow position: | chr18:32396062-32396210 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 126, 100 |
| Conread position: | 578-730 |
| Cow position: | chr18:21617861-21617710 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 583-834 |
| Cow position: | chr18:16064753-16065013 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 135, 94 |
| Conread position: | 591-834 |
| Cow position: | chr18:37762114-37762379 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 8, 89 |
| Conread position: | 592-774 |
| Cow position: | chr18:16559260-16559074 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 24, 183 |
| Conread position: | 594-769 |
| Cow position: | chr18:27827774-27827949 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 134, 76 |
| Conread position: | 609-835 |
| Cow position: | chr18:39097739-39097974 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 190 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 69, 83 |
| Conread position: | 617-838 |
| Cow position: | chr18:47844902-47844665 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 630-834 |
| Cow position: | chr18:52249068-52249285 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 687-835 |
| Cow position: | chr18:14704960-14705111 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 47, 27 |
Show alignments to all cow chromosomes.