Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8062A10.5 |
| Conread position: | 457-636 |
| Cow position: | chr2:73168351-73168528 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 457-838 |
| Cow position: | chr2:70177694-70178066 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 7 |
| Conread position: | 458-841 |
| Cow position: | chr2:74482412-74482019 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 6 |
| Conread position: | 459-661 |
| Cow position: | chr2:42265087-42264889 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 89, 5 |
| Conread position: | 465-773 |
| Cow position: | chr2:39548642-39548951 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 58, 94 |
| Conread position: | 466-647 |
| Cow position: | chr2:23648401-23648219 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 475-774 |
| Cow position: | chr2:856808-856519 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 476-730 |
| Cow position: | chr2:18089064-18088796 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 480-747 |
| Cow position: | chr2:2400709-2400442 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 25, 34 |
| Conread position: | 480-838 |
| Cow position: | chr2:73751120-73750750 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 50 |
| Conread position: | 480-842 |
| Cow position: | chr2:19063424-19063792 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 290, 5 |
| Conread position: | 485-721 |
| Cow position: | chr2:74811089-74811326 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 177 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 33, 48 |
| Conread position: | 486-763 |
| Cow position: | chr2:69924062-69924339 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 41 |
| Conread position: | 490-643 |
| Cow position: | chr2:46307816-46307664 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 490-676 |
| Cow position: | chr2:67381870-67381676 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 140 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 33, 157 |
| Conread position: | 490-705 |
| Cow position: | chr2:12855008-12854795 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 165 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 490-724 |
| Cow position: | chr2:77715171-77715399 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 27, 36 |
| Conread position: | 490-838 |
| Cow position: | chr2:19150110-19150468 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 277, 35 |
| Conread position: | 490-838 |
| Cow position: | chr2:46258223-46258587 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 274 |
| Conread position: | 491-838 |
| Cow position: | chr2:376683-377045 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 34 |
| Conread position: | 492-660 |
| Cow position: | chr2:18448859-18448693 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 21, 12 |
| Conread position: | 492-730 |
| Cow position: | chr2:74694884-74694645 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 35 |
| Conread position: | 492-767 |
| Cow position: | chr2:55407399-55407138 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 492-768 |
| Cow position: | chr2:21755404-21755138 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 197 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 20, 34 |
| Conread position: | 493-834 |
| Cow position: | chr2:74308274-74307941 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 225, 33 |
| Conread position: | 494-724 |
| Cow position: | chr2:46277578-46277348 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 6, 53 |
| Conread position: | 503-684 |
| Cow position: | chr2:46448085-46448270 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 12, 27 |
| Conread position: | 503-702 |
| Cow position: | chr2:36951598-36951799 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 158 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 12, 27 |
| Conread position: | 503-769 |
| Cow position: | chr2:29450727-29450459 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 31 |
| Conread position: | 503-773 |
| Cow position: | chr2:15339687-15339420 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 503-834 |
| Cow position: | chr2:42190740-42191085 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 247, 15 |
| Conread position: | 503-838 |
| Cow position: | chr2:64175207-64174867 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 31 |
| Conread position: | 503-838 |
| Cow position: | chr2:69640812-69641150 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 238, 152 |
| Conread position: | 503-838 |
| Cow position: | chr2:71461634-71461983 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 251, 128 |
| Conread position: | 504-754 |
| Cow position: | chr2:49862286-49862037 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 191 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 11, 26 |
| Conread position: | 504-769 |
| Cow position: | chr2:13332372-13332106 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 165 |
| Conread position: | 504-774 |
| Cow position: | chr2:46490421-46490150 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 194 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 52, 32 |
| Conread position: | 504-838 |
| Cow position: | chr2:27777022-27776672 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 29 |
| Conread position: | 506-720 |
| Cow position: | chr2:66454868-66454655 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 149 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 12, 21 |
| Conread position: | 509-828 |
| Cow position: | chr2:81130151-81129816 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 21 |
| Conread position: | 509-834 |
| Cow position: | chr2:36950902-36951230 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 76 |
| Conread position: | 510-767 |
| Cow position: | chr2:48070914-48071181 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 25, 50 |
| Conread position: | 513-838 |
| Cow position: | chr2:45113865-45113527 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 252, 159 |
| Conread position: | 514-776 |
| Cow position: | chr2:59163684-59163944 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 144, 15 |
| Conread position: | 521-724 |
| Cow position: | chr2:33512253-33512454 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 16, 33 |
| Conread position: | 524-712 |
| Cow position: | chr2:76618166-76617982 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 174, 131 |
| Conread position: | 524-828 |
| Cow position: | chr2:70279369-70279061 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 180 |
| Conread position: | 526-838 |
| Cow position: | chr2:33219078-33219402 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 29 |
| Conread position: | 529-768 |
| Cow position: | chr2:5327941-5327703 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 0 |
| Conread position: | 530-838 |
| Cow position: | chr2:3713631-3713952 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 185 |
| Conread position: | 537-684 |
| Cow position: | chr2:70290022-70289879 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 112 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 538-717 |
| Cow position: | chr2:15335971-15335794 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 539-769 |
| Cow position: | chr2:1683002-1683236 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 5, 191 |
| Conread position: | 541-725 |
| Cow position: | chr2:37052608-37052427 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 545-838 |
| Cow position: | chr2:45690345-45690043 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 226, 164 |
| Conread position: | 549-760 |
| Cow position: | chr2:57995811-57996014 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 192, 9 |
| Conread position: | 549-769 |
| Cow position: | chr2:9509062-9509285 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 111, 170 |
| Conread position: | 549-838 |
| Cow position: | chr2:36659938-36660232 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 211 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 208, 14 |
| Conread position: | 552-839 |
| Cow position: | chr2:65334681-65334380 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 0 |
| Conread position: | 555-755 |
| Cow position: | chr2:528711-528517 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 162, 8 |
| Conread position: | 557-838 |
| Cow position: | chr2:38809251-38809547 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 220 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 53, 127 |
| Conread position: | 558-825 |
| Cow position: | chr2:13640230-13639958 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 197 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 159, 14 |
| Conread position: | 559-764 |
| Cow position: | chr2:68702685-68702479 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 146 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 11, 114 |
| Conread position: | 563-774 |
| Cow position: | chr2:958301-958504 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 154, 27 |
| Conread position: | 570-698 |
| Cow position: | chr2:86258604-86258476 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 571-707 |
| Cow position: | chr2:10160902-10161038 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 109 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 571-746 |
| Cow position: | chr2:75609039-75608861 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 579-769 |
| Cow position: | chr2:74439267-74439450 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 582-754 |
| Cow position: | chr2:68726845-68727011 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 599-769 |
| Cow position: | chr2:40449474-40449645 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 144 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 128, 23 |
| Conread position: | 613-838 |
| Cow position: | chr2:71465639-71465880 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 60, 187 |
| Conread position: | 629-769 |
| Cow position: | chr2:73168733-73168862 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 103, 31 |
| Conread position: | 631-838 |
| Cow position: | chr2:43664115-43664334 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 96, 75 |
| Conread position: | 633-838 |
| Cow position: | chr2:64784327-64784546 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 640-828 |
| Cow position: | chr2:60310805-60311009 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 644-838 |
| Cow position: | chr2:23646420-23646212 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 83, 0 |
Show alignments to all cow chromosomes.