Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8062A10.5 |
| Conread position: | 433-838 |
| Cow position: | chr20:4256914-4256485 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 284 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 28, 41 |
| Conread position: | 448-765 |
| Cow position: | chr20:23913225-23913538 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 220 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 293, 16 |
| Conread position: | 457-750 |
| Cow position: | chr20:37071211-37071500 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 7 |
| Conread position: | 467-767 |
| Cow position: | chr20:12324786-12324485 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 194 |
| Conread position: | 469-754 |
| Cow position: | chr20:16970514-16970791 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 208 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 86, 20 |
| Conread position: | 477-764 |
| Cow position: | chr20:35815778-35815496 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 208 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 250, 75 |
| Conread position: | 479-838 |
| Cow position: | chr20:5540907-5540536 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 273, 14 |
| Conread position: | 483-838 |
| Cow position: | chr20:20071114-20071471 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 58 |
| Conread position: | 485-838 |
| Cow position: | chr20:19121227-19121595 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 100 |
| Conread position: | 490-772 |
| Cow position: | chr20:37934879-37934596 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 47, 27 |
| Conread position: | 490-834 |
| Cow position: | chr20:11065531-11065900 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 28 |
| Conread position: | 491-838 |
| Cow position: | chr20:33705381-33705018 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 247 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 195, 27 |
| Conread position: | 502-769 |
| Cow position: | chr20:24000287-24000553 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 28 |
| Conread position: | 503-641 |
| Cow position: | chr20:33190651-33190789 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 503-755 |
| Cow position: | chr20:30154116-30154361 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 188 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 503-769 |
| Cow position: | chr20:32893819-32894092 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 69 |
| Conread position: | 503-838 |
| Cow position: | chr20:18784192-18783853 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 250 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 12, 27 |
| Conread position: | 504-663 |
| Cow position: | chr20:3053917-3054076 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 125 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 11, 26 |
| Conread position: | 505-635 |
| Cow position: | chr20:36047161-36047033 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 34, 40 |
| Conread position: | 507-834 |
| Cow position: | chr20:7776738-7777077 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 10 |
| Conread position: | 509-753 |
| Cow position: | chr20:23925429-23925183 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 180 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 6, 21 |
| Conread position: | 509-838 |
| Cow position: | chr20:34964816-34964469 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 249 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 6, 21 |
| Conread position: | 510-756 |
| Cow position: | chr20:40092894-40093135 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 183 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 510-765 |
| Cow position: | chr20:12983547-12983812 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 197 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 32, 80 |
| Conread position: | 515-838 |
| Cow position: | chr20:20768841-20768509 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 214, 134 |
| Conread position: | 524-772 |
| Cow position: | chr20:18828613-18828859 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 191 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 61, 7 |
| Conread position: | 527-769 |
| Cow position: | chr20:42107627-42107865 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 233, 28 |
| Conread position: | 529-744 |
| Cow position: | chr20:39354500-39354285 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 165 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 149, 174 |
| Conread position: | 529-835 |
| Cow position: | chr20:13357913-13358238 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 234 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 8, 21 |
| Conread position: | 529-838 |
| Cow position: | chr20:39973485-39973799 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 73 |
| Conread position: | 530-748 |
| Cow position: | chr20:1128204-1128423 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 167 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 147, 0 |
| Conread position: | 532-754 |
| Cow position: | chr20:26055764-26055987 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 172 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 23, 165 |
| Conread position: | 533-759 |
| Cow position: | chr20:3057291-3057512 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 536-699 |
| Cow position: | chr20:4624243-4624401 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 542-754 |
| Cow position: | chr20:41172273-41172064 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 153, 115 |
| Conread position: | 552-774 |
| Cow position: | chr20:39422315-39422533 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 164, 11 |
| Conread position: | 555-774 |
| Cow position: | chr20:40198335-40198548 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 33, 65 |
| Conread position: | 562-721 |
| Cow position: | chr20:38058620-38058777 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 569-767 |
| Cow position: | chr20:11066661-11066461 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 161 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 11, 135 |
| Conread position: | 577-822 |
| Cow position: | chr20:39730510-39730766 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 150, 78 |
| Conread position: | 580-761 |
| Cow position: | chr20:13246254-13246434 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 65, 110 |
| Conread position: | 583-774 |
| Cow position: | chr20:2885732-2885925 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 158 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 0 |
| Conread position: | 583-834 |
| Cow position: | chr20:40201011-40200753 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 170, 23 |
| Conread position: | 584-835 |
| Cow position: | chr20:23999067-23999329 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 199 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 169, 90 |
| Conread position: | 586-841 |
| Cow position: | chr20:41445992-41446261 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 0 |
| Conread position: | 603-754 |
| Cow position: | chr20:42918929-42918779 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 124, 93 |
| Conread position: | 647-760 |
| Cow position: | chr20:36046331-36046217 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 87, 0 |
Show alignments to all cow chromosomes.