Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8062A10.5 |
| Conread position: | 457-671 |
| Cow position: | chr21:9019180-9019389 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 152 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 457-774 |
| Cow position: | chr21:10275574-10275889 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 18 |
| Conread position: | 457-838 |
| Cow position: | chr21:35555467-35555858 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 7 |
| Conread position: | 457-838 |
| Cow position: | chr21:36008299-36008671 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 271 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 131, 7 |
| Conread position: | 457-838 |
| Cow position: | chr21:45811874-45811477 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 279 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 58, 7 |
| Conread position: | 457-851 |
| Cow position: | chr21:9199758-9200167 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 18 |
| Conread position: | 471-716 |
| Cow position: | chr21:19671362-19671595 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 474-769 |
| Cow position: | chr21:9015564-9015856 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 19 |
| Conread position: | 477-691 |
| Cow position: | chr21:49689241-49689034 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 170, 0 |
| Conread position: | 477-835 |
| Cow position: | chr21:958274-958642 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 0 |
| Conread position: | 478-769 |
| Cow position: | chr21:41140241-41139956 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 272, 22 |
| Conread position: | 479-838 |
| Cow position: | chr21:2681723-2682092 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 249 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 230, 14 |
| Conread position: | 479-838 |
| Cow position: | chr21:13360934-13361302 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 274, 14 |
| Conread position: | 479-838 |
| Cow position: | chr21:39145182-39145556 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 265 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 14, 26 |
| Conread position: | 480-838 |
| Cow position: | chr21:42595856-42596227 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 261 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 45, 85 |
| Conread position: | 483-774 |
| Cow position: | chr21:18468988-18468699 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 208 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 21, 163 |
| Conread position: | 490-715 |
| Cow position: | chr21:8941476-8941256 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 172 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 491-633 |
| Cow position: | chr21:19934159-19934302 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 107 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 491-769 |
| Cow position: | chr21:32040513-32040243 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 34 |
| Conread position: | 492-721 |
| Cow position: | chr21:44558881-44558655 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 51, 33 |
| Conread position: | 492-769 |
| Cow position: | chr21:12410141-12410417 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 268, 10 |
| Conread position: | 499-769 |
| Cow position: | chr21:8515598-8515867 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 79 |
| Conread position: | 502-730 |
| Cow position: | chr21:41536073-41535850 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 176 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 138, 27 |
| Conread position: | 503-680 |
| Cow position: | chr21:42863605-42863423 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 136 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 55, 33 |
| Conread position: | 503-761 |
| Cow position: | chr21:48537991-48538250 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 251, 0 |
| Conread position: | 503-769 |
| Cow position: | chr21:2832772-2832503 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 147 |
| Conread position: | 503-769 |
| Cow position: | chr21:17205754-17206023 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 32 |
| Conread position: | 503-773 |
| Cow position: | chr21:18540633-18540891 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 191 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 251, 86 |
| Conread position: | 503-774 |
| Cow position: | chr21:20785095-20785381 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 192, 43 |
| Conread position: | 503-819 |
| Cow position: | chr21:4809736-4809418 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 72 |
| Conread position: | 504-754 |
| Cow position: | chr21:19572720-19572965 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 28 |
| Conread position: | 504-774 |
| Cow position: | chr21:35306564-35306293 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 201 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 11, 24 |
| Conread position: | 504-838 |
| Cow position: | chr21:17215247-17215585 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 250 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 11, 24 |
| Conread position: | 504-838 |
| Cow position: | chr21:40698177-40698527 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 250 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 11, 24 |
| Conread position: | 504-838 |
| Cow position: | chr21:49690881-49691228 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 252 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 51, 32 |
| Conread position: | 505-756 |
| Cow position: | chr21:39137183-39136935 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 184 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 10, 28 |
| Conread position: | 505-756 |
| Cow position: | chr21:40690132-40689884 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 185 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 10, 28 |
| Conread position: | 505-769 |
| Cow position: | chr21:47458895-47459159 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 190 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 46, 28 |
| Conread position: | 505-838 |
| Cow position: | chr21:37708147-37707808 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 28 |
| Conread position: | 506-647 |
| Cow position: | chr21:10418073-10418212 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 9, 24 |
| Conread position: | 506-769 |
| Cow position: | chr21:22162722-22162964 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 187 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 172, 139 |
| Conread position: | 509-825 |
| Cow position: | chr21:14681780-14682097 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 232 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 6, 44 |
| Conread position: | 520-769 |
| Cow position: | chr21:7075177-7075429 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 32 |
| Conread position: | 522-636 |
| Cow position: | chr21:8610085-8610199 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 92 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 33, 14 |
| Conread position: | 524-754 |
| Cow position: | chr21:49024847-49024617 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 168 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 524-767 |
| Cow position: | chr21:372811-372569 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 188, 128 |
| Conread position: | 524-848 |
| Cow position: | chr21:7096110-7096451 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 244 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 44, 52 |
| Conread position: | 525-838 |
| Cow position: | chr21:42074866-42074539 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 231 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 204, 0 |
| Conread position: | 526-769 |
| Cow position: | chr21:32919854-32920099 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 0 |
| Conread position: | 531-702 |
| Cow position: | chr21:9013775-9013945 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 143, 0 |
| Conread position: | 531-755 |
| Cow position: | chr21:6606246-6606024 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 165 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 164, 0 |
| Conread position: | 532-671 |
| Cow position: | chr21:14685885-14685743 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 109 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 532-769 |
| Cow position: | chr21:47231427-47231651 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 533-721 |
| Cow position: | chr21:35744182-35743990 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 16, 179 |
| Conread position: | 533-835 |
| Cow position: | chr21:17788732-17789025 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 243, 31 |
| Conread position: | 533-838 |
| Cow position: | chr21:14478535-14478223 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 12 |
| Conread position: | 539-754 |
| Cow position: | chr21:37348794-37348576 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 5, 191 |
| Conread position: | 541-838 |
| Cow position: | chr21:37260560-37260249 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 223 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 166, 27 |
| Conread position: | 546-770 |
| Cow position: | chr21:12647406-12647629 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 173, 117 |
| Conread position: | 547-768 |
| Cow position: | chr21:41502210-41501990 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 170 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 187, 58 |
| Conread position: | 548-753 |
| Cow position: | chr21:19837626-19837421 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 75, 149 |
| Conread position: | 554-751 |
| Cow position: | chr21:39256120-39255926 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 155 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 554-830 |
| Cow position: | chr21:25335516-25335227 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 215 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 176, 79 |
| Conread position: | 555-754 |
| Cow position: | chr21:43771705-43771904 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 17, 12 |
| Conread position: | 574-774 |
| Cow position: | chr21:15016040-15015837 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 578-730 |
| Cow position: | chr21:33270415-33270567 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 132 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 97, 139 |
| Conread position: | 578-838 |
| Cow position: | chr21:32460009-32459729 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 202 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 139, 55 |
| Conread position: | 579-830 |
| Cow position: | chr21:47955431-47955699 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 55 |
| Conread position: | 579-835 |
| Cow position: | chr21:7159600-7159849 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 153, 7 |
| Conread position: | 581-769 |
| Cow position: | chr21:1567470-1567658 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 156 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 584-769 |
| Cow position: | chr21:35448455-35448644 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 28, 89 |
| Conread position: | 584-838 |
| Cow position: | chr21:30926052-30925785 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 116, 38 |
| Conread position: | 588-763 |
| Cow position: | chr21:41561175-41561351 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 142, 0 |
| Conread position: | 601-768 |
| Cow position: | chr21:162900-163067 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 131, 23 |
| Conread position: | 604-766 |
| Cow position: | chr21:45926439-45926274 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 613-838 |
| Cow position: | chr21:23277743-23277980 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 173 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 137, 73 |
| Conread position: | 627-838 |
| Cow position: | chr21:5924077-5923850 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 628-754 |
| Cow position: | chr21:8610454-8610580 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 67, 105 |
Show alignments to all cow chromosomes.