Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8062A10.5 |
| Conread position: | 66-314 |
| Cow position: | chr23:12980922-12980668 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 413-819 |
| Cow position: | chr23:1899851-1899445 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 6 |
| Conread position: | 455-805 |
| Cow position: | chr23:12980579-12980245 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 456-769 |
| Cow position: | chr23:6048670-6048359 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 8 |
| Conread position: | 457-745 |
| Cow position: | chr23:19788874-19788592 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 457-769 |
| Cow position: | chr23:1280356-1280674 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 7 |
| Conread position: | 457-838 |
| Cow position: | chr23:6303558-6303945 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 7 |
| Conread position: | 468-822 |
| Cow position: | chr23:31086053-31086398 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 248 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 12, 39 |
| Conread position: | 468-841 |
| Cow position: | chr23:12972589-12972206 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 50 |
| Conread position: | 478-748 |
| Cow position: | chr23:22294522-22294249 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 59, 78 |
| Conread position: | 479-787 |
| Cow position: | chr23:18987194-18986890 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 223 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 219, 14 |
| Conread position: | 480-721 |
| Cow position: | chr23:33993769-33993529 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 37, 50 |
| Conread position: | 482-761 |
| Cow position: | chr23:596537-596812 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 268, 20 |
| Conread position: | 490-810 |
| Cow position: | chr23:22305156-22305478 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 89, 147 |
| Conread position: | 490-833 |
| Cow position: | chr23:5219738-5220094 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 40 |
| Conread position: | 490-838 |
| Cow position: | chr23:18568583-18568217 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 237, 136 |
| Conread position: | 490-838 |
| Cow position: | chr23:36440056-36439723 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 255 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 66, 23 |
| Conread position: | 491-838 |
| Cow position: | chr23:22331509-22331160 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 87 |
| Conread position: | 492-754 |
| Cow position: | chr23:4771290-4771026 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 125, 10 |
| Conread position: | 492-769 |
| Cow position: | chr23:20246240-20245961 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 200 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 64, 10 |
| Conread position: | 492-834 |
| Cow position: | chr23:19840873-19841226 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 34 |
| Conread position: | 493-654 |
| Cow position: | chr23:20108242-20108081 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 120 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 493-730 |
| Cow position: | chr23:36437257-36437494 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 178 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 154, 210 |
| Conread position: | 493-767 |
| Cow position: | chr23:664787-665065 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 203 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 55, 127 |
| Conread position: | 503-692 |
| Cow position: | chr23:3536313-3536125 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 151 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 12, 24 |
| Conread position: | 503-753 |
| Cow position: | chr23:7527434-7527187 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 27 |
| Conread position: | 503-754 |
| Cow position: | chr23:26343439-26343194 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 191 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 12, 27 |
| Conread position: | 504-772 |
| Cow position: | chr23:3202065-3202333 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 12, 168 |
| Conread position: | 505-835 |
| Cow position: | chr23:35164804-35164464 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 25 |
| Conread position: | 510-702 |
| Cow position: | chr23:7523272-7523469 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 104, 19 |
| Conread position: | 510-838 |
| Cow position: | chr23:28882263-28882600 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 254, 183 |
| Conread position: | 526-680 |
| Cow position: | chr23:20286175-20286023 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 38, 26 |
| Conread position: | 526-724 |
| Cow position: | chr23:26590893-26591091 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 145 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 120, 67 |
| Conread position: | 527-768 |
| Cow position: | chr23:14741190-14740951 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 183 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 12, 158 |
| Conread position: | 529-697 |
| Cow position: | chr23:30589221-30589053 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 149, 165 |
| Conread position: | 529-761 |
| Cow position: | chr23:4634127-4634340 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 195, 94 |
| Conread position: | 529-769 |
| Cow position: | chr23:4651906-4652145 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 225, 23 |
| Conread position: | 529-828 |
| Cow position: | chr23:31756499-31756819 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 217 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 127, 9 |
| Conread position: | 529-838 |
| Cow position: | chr23:18243752-18244076 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 234 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 143, 100 |
| Conread position: | 532-769 |
| Cow position: | chr23:23877587-23877348 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 20 |
| Conread position: | 532-838 |
| Cow position: | chr23:27918385-27918709 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 538-772 |
| Cow position: | chr23:1606535-1606773 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 142, 217 |
| Conread position: | 541-768 |
| Cow position: | chr23:14744632-14744860 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 14, 41 |
| Conread position: | 557-761 |
| Cow position: | chr23:9637262-9637460 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 164 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 193, 18 |
| Conread position: | 557-774 |
| Cow position: | chr23:27929-27714 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 196, 127 |
| Conread position: | 571-850 |
| Cow position: | chr23:595370-595662 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 196, 0 |
| Conread position: | 582-838 |
| Cow position: | chr23:18394292-18394023 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 200 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 97, 130 |
| Conread position: | 595-834 |
| Cow position: | chr23:13307480-13307733 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 132, 83 |
| Conread position: | 598-805 |
| Cow position: | chr23:23444829-23445031 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 161 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 91, 107 |
| Conread position: | 599-769 |
| Cow position: | chr23:4882927-4882756 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 27, 90 |
| Conread position: | 615-769 |
| Cow position: | chr23:22131670-22131836 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 628-769 |
| Cow position: | chr23:7521921-7522064 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 115 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 68, 0 |
Show alignments to all cow chromosomes.