Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8062A10.5 |
| Conread position: | 459-635 |
| Cow position: | chr24:39482162-39481986 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 19, 64 |
| Conread position: | 477-838 |
| Cow position: | chr24:31376799-31377166 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 249, 24 |
| Conread position: | 479-715 |
| Cow position: | chr24:3836307-3836076 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 182 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 479-753 |
| Cow position: | chr24:35213722-35213463 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 37, 15 |
| Conread position: | 479-754 |
| Cow position: | chr24:3534137-3534400 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 198 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 479-769 |
| Cow position: | chr24:39464895-39465180 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 480-744 |
| Cow position: | chr24:8376751-8376486 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 58, 45 |
| Conread position: | 487-724 |
| Cow position: | chr24:18401689-18401453 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 7 |
| Conread position: | 499-769 |
| Cow position: | chr24:41205372-41205645 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 201 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 43, 30 |
| Conread position: | 499-838 |
| Cow position: | chr24:140134-139782 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 256 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 30, 56 |
| Conread position: | 502-725 |
| Cow position: | chr24:39467014-39467236 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 87 |
| Conread position: | 503-754 |
| Cow position: | chr24:43913455-43913193 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 191 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 52, 131 |
| Conread position: | 503-838 |
| Cow position: | chr24:263997-263643 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 71 |
| Conread position: | 503-838 |
| Cow position: | chr24:18621023-18620677 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 27 |
| Conread position: | 504-675 |
| Cow position: | chr24:39304327-39304155 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 19, 50 |
| Conread position: | 504-844 |
| Cow position: | chr24:26892259-26891905 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 35 |
| Conread position: | 511-763 |
| Cow position: | chr24:20927315-20927560 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 0 |
| Conread position: | 521-828 |
| Cow position: | chr24:266211-265896 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 31 |
| Conread position: | 527-754 |
| Cow position: | chr24:30758589-30758816 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 108 |
| Conread position: | 527-838 |
| Cow position: | chr24:38037089-38036767 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 25 |
| Conread position: | 529-774 |
| Cow position: | chr24:236052-236301 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 247 |
| Conread position: | 530-838 |
| Cow position: | chr24:27218389-27218704 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 0 |
| Conread position: | 532-838 |
| Cow position: | chr24:26262186-26262504 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 227 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 218, 39 |
| Conread position: | 545-822 |
| Cow position: | chr24:39460135-39460413 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 110 |
| Conread position: | 547-719 |
| Cow position: | chr24:13766846-13767018 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 136 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 549-748 |
| Cow position: | chr24:4800117-4800313 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 168, 114 |
| Conread position: | 549-753 |
| Cow position: | chr24:12296481-12296683 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 549-825 |
| Cow position: | chr24:13161404-13161692 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 96, 132 |
| Conread position: | 552-681 |
| Cow position: | chr24:32458368-32458494 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 104 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 554-838 |
| Cow position: | chr24:155843-155555 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 30 |
| Conread position: | 554-840 |
| Cow position: | chr24:2961045-2961350 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 0 |
| Conread position: | 555-698 |
| Cow position: | chr24:41504707-41504847 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 557-774 |
| Cow position: | chr24:41503137-41503360 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 157, 116 |
| Conread position: | 562-768 |
| Cow position: | chr24:32217980-32218192 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 8, 41 |
| Conread position: | 562-825 |
| Cow position: | chr24:19734954-19735224 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 196 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 193, 164 |
| Conread position: | 566-770 |
| Cow position: | chr24:1942409-1942208 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 74, 90 |
| Conread position: | 566-806 |
| Cow position: | chr24:26108515-26108272 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 161, 104 |
| Conread position: | 570-838 |
| Cow position: | chr24:19073387-19073107 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 175, 68 |
| Conread position: | 574-765 |
| Cow position: | chr24:1940095-1939906 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 176, 93 |
| Conread position: | 593-754 |
| Cow position: | chr24:41551221-41551371 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 611-757 |
| Cow position: | chr24:11920489-11920635 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 122 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 668-767 |
| Cow position: | chr24:7846769-7846868 (view UCSC Genome Browser custom track) |
| Alignm length: | 100 |
| Alignm identity: | 82 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.