Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8062A10.5 |
| Conread position: | 416-838 |
| Cow position: | chr25:20645606-20646043 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 26 |
| Conread position: | 464-782 |
| Cow position: | chr25:5774486-5774167 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 67 |
| Conread position: | 466-834 |
| Cow position: | chr25:2001878-2002249 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 88 |
| Conread position: | 471-765 |
| Cow position: | chr25:24750383-24750679 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 205 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 66, 54 |
| Conread position: | 473-838 |
| Cow position: | chr25:20193182-20193537 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 6 |
| Conread position: | 477-767 |
| Cow position: | chr25:21036871-21036580 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 255, 0 |
| Conread position: | 479-745 |
| Cow position: | chr25:21138118-21137857 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 479-828 |
| Cow position: | chr25:16129432-16129071 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 14 |
| Conread position: | 490-721 |
| Cow position: | chr25:21364695-21364470 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 102, 52 |
| Conread position: | 491-702 |
| Cow position: | chr25:19431698-19431908 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 46, 38 |
| Conread position: | 500-769 |
| Cow position: | chr25:34420336-34420593 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 501-754 |
| Cow position: | chr25:20255280-20255529 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 113 |
| Conread position: | 503-713 |
| Cow position: | chr25:7510336-7510124 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 12, 24 |
| Conread position: | 504-739 |
| Cow position: | chr25:16695860-16695629 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 36 |
| Conread position: | 505-735 |
| Cow position: | chr25:26236775-26236548 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 23 |
| Conread position: | 505-737 |
| Cow position: | chr25:26313749-26313982 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 201, 0 |
| Conread position: | 509-698 |
| Cow position: | chr25:23821106-23821283 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 529-657 |
| Cow position: | chr25:18455925-18456049 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 102 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 529-677 |
| Cow position: | chr25:21668836-21668689 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 531-838 |
| Cow position: | chr25:21516440-21516760 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 239 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 183, 45 |
| Conread position: | 532-769 |
| Cow position: | chr25:2497494-2497265 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 177 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 226, 20 |
| Conread position: | 532-769 |
| Cow position: | chr25:11411452-11411216 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 84 |
| Conread position: | 532-774 |
| Cow position: | chr25:13492684-13492432 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 23, 108 |
| Conread position: | 532-825 |
| Cow position: | chr25:16130137-16129840 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 222 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 157, 40 |
| Conread position: | 532-838 |
| Cow position: | chr25:13799590-13799914 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 533-769 |
| Cow position: | chr25:11263150-11263391 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 544-838 |
| Cow position: | chr25:25686970-25687272 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 226 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 206, 118 |
| Conread position: | 552-767 |
| Cow position: | chr25:21516782-21516996 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 171 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 162, 86 |
| Conread position: | 552-776 |
| Cow position: | chr25:8976211-8976434 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 200, 144 |
| Conread position: | 552-833 |
| Cow position: | chr25:32663825-32663529 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 152 |
| Conread position: | 552-838 |
| Cow position: | chr25:17390165-17389864 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 201, 172 |
| Conread position: | 554-755 |
| Cow position: | chr25:6950108-6949908 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 172, 0 |
| Conread position: | 555-721 |
| Cow position: | chr25:26469755-26469921 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 555-752 |
| Cow position: | chr25:38588181-38588377 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 171, 0 |
| Conread position: | 555-838 |
| Cow position: | chr25:13695616-13695334 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 102 |
| Conread position: | 555-838 |
| Cow position: | chr25:21321001-21320699 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 23 |
| Conread position: | 556-834 |
| Cow position: | chr25:6932801-6932512 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 217 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 162, 105 |
| Conread position: | 574-837 |
| Cow position: | chr25:11412626-11412355 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 204 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 180, 81 |
| Conread position: | 583-741 |
| Cow position: | chr25:11350840-11350991 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 583-751 |
| Cow position: | chr25:8445532-8445365 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 143, 0 |
| Conread position: | 584-760 |
| Cow position: | chr25:16131476-16131305 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 21, 77 |
| Conread position: | 604-752 |
| Cow position: | chr25:7294494-7294352 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 621-757 |
| Cow position: | chr25:27883671-27883808 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 105 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 626-838 |
| Cow position: | chr25:32711711-32711940 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 685-838 |
| Cow position: | chr25:23821360-23821516 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 64, 18 |
Show alignments to all cow chromosomes.