Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8062A10.5 |
| Conread position: | 456-748 |
| Cow position: | chr27:7618798-7618516 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 457-665 |
| Cow position: | chr27:23087672-23087463 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 21, 7 |
| Conread position: | 457-763 |
| Cow position: | chr27:23089527-23089831 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 7 |
| Conread position: | 457-838 |
| Cow position: | chr27:20255327-20254955 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 266 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 21, 7 |
| Conread position: | 478-838 |
| Cow position: | chr27:26071913-26072278 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 262 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 37, 15 |
| Conread position: | 479-766 |
| Cow position: | chr27:7841323-7841598 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 275, 14 |
| Conread position: | 479-838 |
| Cow position: | chr27:5486239-5486607 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 266 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 223, 14 |
| Conread position: | 485-698 |
| Cow position: | chr27:23996590-23996378 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 166 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 490-769 |
| Cow position: | chr27:28157659-28157950 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 221 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 23, 37 |
| Conread position: | 491-834 |
| Cow position: | chr27:18025294-18024954 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 240 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 273, 34 |
| Conread position: | 504-708 |
| Cow position: | chr27:4496639-4496842 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 504-838 |
| Cow position: | chr27:23914451-23914102 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 256 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 230, 21 |
| Conread position: | 509-701 |
| Cow position: | chr27:22218716-22218527 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 143 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 33, 98 |
| Conread position: | 513-838 |
| Cow position: | chr27:15511689-15512028 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 0 |
| Conread position: | 520-724 |
| Cow position: | chr27:7139653-7139856 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 148, 19 |
| Conread position: | 520-726 |
| Cow position: | chr27:7148072-7148277 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 198, 19 |
| Conread position: | 524-682 |
| Cow position: | chr27:30992616-30992459 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 19, 29 |
| Conread position: | 524-838 |
| Cow position: | chr27:20009640-20009970 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 97 |
| Conread position: | 526-753 |
| Cow position: | chr27:18460776-18460551 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 174 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 29, 73 |
| Conread position: | 526-838 |
| Cow position: | chr27:8664372-8664691 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 223 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 529-734 |
| Cow position: | chr27:30006888-30007089 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 529-838 |
| Cow position: | chr27:5095892-5096206 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 229 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 26, 7 |
| Conread position: | 531-834 |
| Cow position: | chr27:18673308-18673618 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 237, 176 |
| Conread position: | 533-703 |
| Cow position: | chr27:16587719-16587548 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 150, 0 |
| Conread position: | 533-738 |
| Cow position: | chr27:29665309-29665517 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 178, 145 |
| Conread position: | 538-645 |
| Cow position: | chr27:19455325-19455220 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 87 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 549-702 |
| Cow position: | chr27:23064309-23064458 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 554-755 |
| Cow position: | chr27:31261573-31261772 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 141, 51 |
| Conread position: | 554-835 |
| Cow position: | chr27:18731487-18731198 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 18 |
| Conread position: | 555-754 |
| Cow position: | chr27:28546657-28546460 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 156 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 555-838 |
| Cow position: | chr27:29699996-29700293 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 165, 17 |
| Conread position: | 555-839 |
| Cow position: | chr27:31545659-31545357 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 51 |
| Conread position: | 579-765 |
| Cow position: | chr27:22529404-22529588 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 148, 79 |
| Conread position: | 579-838 |
| Cow position: | chr27:56284-56011 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 207 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 175, 147 |
| Conread position: | 606-764 |
| Cow position: | chr27:21159056-21158899 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 131 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 42, 25 |
| Conread position: | 616-726 |
| Cow position: | chr27:17825960-17825853 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 90 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 628-769 |
| Cow position: | chr27:5635011-5635153 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 646-725 |
| Cow position: | chr27:17783383-17783462 (view UCSC Genome Browser custom track) |
| Alignm length: | 80 |
| Alignm identity: | 74 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 661-839 |
| Cow position: | chr27:23087171-23086985 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 143 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 668-838 |
| Cow position: | chr27:16591179-16591364 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 59, 0 |
Show alignments to all cow chromosomes.