Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8062A10.5 |
| Conread position: | 409-838 |
| Cow position: | chr29:1446875-1447317 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 305 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 23, 32 |
| Conread position: | 454-682 |
| Cow position: | chr29:11973332-11973108 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 173 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 101, 10 |
| Conread position: | 456-773 |
| Cow position: | chr29:30575654-30575965 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 224 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 92, 8 |
| Conread position: | 457-769 |
| Cow position: | chr29:29128889-29128581 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 36 |
| Conread position: | 468-753 |
| Cow position: | chr29:11360743-11361024 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 25 |
| Conread position: | 471-678 |
| Cow position: | chr29:22690657-22690447 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 85, 30 |
| Conread position: | 473-675 |
| Cow position: | chr29:27061176-27060983 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 476-764 |
| Cow position: | chr29:13500503-13500779 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 210 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 24, 67 |
| Conread position: | 477-834 |
| Cow position: | chr29:25388608-25388964 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 68 |
| Conread position: | 478-834 |
| Cow position: | chr29:1586553-1586192 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 250 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 85, 11 |
| Conread position: | 479-700 |
| Cow position: | chr29:21306618-21306838 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 185, 14 |
| Conread position: | 489-774 |
| Cow position: | chr29:43153289-43153005 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 35 |
| Conread position: | 490-702 |
| Cow position: | chr29:40874686-40874478 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 163 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 28, 36 |
| Conread position: | 490-830 |
| Cow position: | chr29:1761990-1761648 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 43 |
| Conread position: | 490-836 |
| Cow position: | chr29:18444774-18445121 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 257 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 132, 45 |
| Conread position: | 490-838 |
| Cow position: | chr29:10626099-10625737 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 37 |
| Conread position: | 491-838 |
| Cow position: | chr29:40566909-40567271 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 60, 186 |
| Conread position: | 492-710 |
| Cow position: | chr29:39420263-39420047 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 33, 68 |
| Conread position: | 492-770 |
| Cow position: | chr29:39419703-39419426 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 239, 44 |
| Conread position: | 492-838 |
| Cow position: | chr29:38263163-38262801 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 37 |
| Conread position: | 493-838 |
| Cow position: | chr29:39532555-39532192 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 255 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 168, 130 |
| Conread position: | 503-752 |
| Cow position: | chr29:5532017-5531769 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 41, 29 |
| Conread position: | 503-752 |
| Cow position: | chr29:5535770-5535522 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 41, 29 |
| Conread position: | 503-754 |
| Cow position: | chr29:24506930-24506674 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 25, 58 |
| Conread position: | 503-761 |
| Cow position: | chr29:24140340-24140096 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 187 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 203, 33 |
| Conread position: | 503-768 |
| Cow position: | chr29:1900481-1900737 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 194 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 14, 30 |
| Conread position: | 503-807 |
| Cow position: | chr29:24801641-24801950 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 503-838 |
| Cow position: | chr29:40632658-40633000 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 249 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 245, 133 |
| Conread position: | 503-841 |
| Cow position: | chr29:30355910-30355568 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 247 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 12, 24 |
| Conread position: | 504-708 |
| Cow position: | chr29:29637719-29637515 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 151, 78 |
| Conread position: | 504-724 |
| Cow position: | chr29:1772925-1773137 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 504-769 |
| Cow position: | chr29:29455684-29455947 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 504-838 |
| Cow position: | chr29:8849685-8849338 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 242 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 191, 32 |
| Conread position: | 505-745 |
| Cow position: | chr29:34090279-34090039 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 10, 23 |
| Conread position: | 509-835 |
| Cow position: | chr29:23134082-23133756 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 243, 27 |
| Conread position: | 511-767 |
| Cow position: | chr29:312989-313243 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 203, 7 |
| Conread position: | 514-685 |
| Cow position: | chr29:26524357-26524528 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 521-656 |
| Cow position: | chr29:42904855-42904990 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 103 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 529-680 |
| Cow position: | chr29:19109453-19109606 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 529-767 |
| Cow position: | chr29:20049838-20049597 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 173 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 144, 0 |
| Conread position: | 529-768 |
| Cow position: | chr29:44023867-44023630 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 182 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 221, 7 |
| Conread position: | 529-842 |
| Cow position: | chr29:27058426-27058097 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 240 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 145, 92 |
| Conread position: | 531-769 |
| Cow position: | chr29:30722131-30721887 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 178 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 532-769 |
| Cow position: | chr29:3235603-3235368 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 7, 15 |
| Conread position: | 532-769 |
| Cow position: | chr29:32204097-32203860 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 20 |
| Conread position: | 533-838 |
| Cow position: | chr29:30117271-30116958 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 213 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 184, 130 |
| Conread position: | 547-740 |
| Cow position: | chr29:24704144-24704334 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 44, 108 |
| Conread position: | 549-769 |
| Cow position: | chr29:6743828-6744049 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 0 |
| Conread position: | 550-701 |
| Cow position: | chr29:275036-275187 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 552-710 |
| Cow position: | chr29:16431365-16431524 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 552-769 |
| Cow position: | chr29:41074354-41074572 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 125, 28 |
| Conread position: | 555-838 |
| Cow position: | chr29:42816542-42816272 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 113, 139 |
| Conread position: | 557-748 |
| Cow position: | chr29:13443164-13443347 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 7, 16 |
| Conread position: | 565-746 |
| Cow position: | chr29:27106204-27106386 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 118, 98 |
| Conread position: | 570-838 |
| Cow position: | chr29:31177291-31177574 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 572-753 |
| Cow position: | chr29:7353384-7353557 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 101, 41 |
| Conread position: | 574-769 |
| Cow position: | chr29:40442755-40442940 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 190, 81 |
| Conread position: | 577-834 |
| Cow position: | chr29:43004790-43005061 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 148, 0 |
| Conread position: | 582-673 |
| Cow position: | chr29:15521680-15521589 (view UCSC Genome Browser custom track) |
| Alignm length: | 92 |
| Alignm identity: | 78 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 603-769 |
| Cow position: | chr29:1105844-1105676 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 606-838 |
| Cow position: | chr29:5230655-5230886 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 144, 87 |
| Conread position: | 609-739 |
| Cow position: | chr29:23135333-23135203 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 105 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 99, 68 |
| Conread position: | 621-754 |
| Cow position: | chr29:30539588-30539451 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 109 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 631-838 |
| Cow position: | chr29:39296126-39295909 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 96, 22 |
Show alignments to all cow chromosomes.