Cow genome map

Conread name: Ss1.1-Pig4-TMW8062A10.5

Conread position: 417-822
Cow position: chr3:3811667-3812075 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 290
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 45, 36

Conread position: 456-682
Cow position: chr3:83606009-83606232 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 163
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 28, 8

Conread position: 456-838
Cow position: chr3:79067462-79067071 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 19

Conread position: 457-769
Cow position: chr3:1902451-1902124 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 230
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 22, 7

Conread position: 457-836
Cow position: chr3:28595460-28595827 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 7

Conread position: 465-794
Cow position: chr3:8435309-8435640 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 239
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 50, 121

Conread position: 466-769
Cow position: chr3:32578666-32578965 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 27

Conread position: 466-830
Cow position: chr3:8146687-8147067 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 271

Conread position: 467-759
Cow position: chr3:78096367-78096089 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 211
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 26, 0

Conread position: 467-776
Cow position: chr3:6645071-6644759 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 224
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 232, 26

Conread position: 477-727
Cow position: chr3:665468-665213 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 185
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 72, 85

Conread position: 478-838
Cow position: chr3:44095533-44095166 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 48

Conread position: 480-686
Cow position: chr3:53210476-53210680 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 146
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 193, 0

Conread position: 480-764
Cow position: chr3:25695748-25695465 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 96

Conread position: 482-835
Cow position: chr3:14038673-14039035 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 281, 219

Conread position: 485-671
Cow position: chr3:53211653-53211469 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 144
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 123, 148

Conread position: 489-718
Cow position: chr3:69279739-69279971 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 173
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 67, 36

Conread position: 490-655
Cow position: chr3:83980530-83980690 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 124
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 28, 38

Conread position: 490-702
Cow position: chr3:548938-549148 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 148
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 27, 40

Conread position: 490-725
Cow position: chr3:53911059-53910824 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 175
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 59, 27

Conread position: 490-845
Cow position: chr3:11951980-11952353 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 124

Conread position: 491-838
Cow position: chr3:16574782-16574419 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 0

Conread position: 497-769
Cow position: chr3:23178748-23178474 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 57

Conread position: 499-676
Cow position: chr3:39226605-39226776 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 126
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 26, 0

Conread position: 500-838
Cow position: chr3:31110515-31110162 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 18

Conread position: 503-718
Cow position: chr3:52608607-52608825 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 167
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 12, 27

Conread position: 503-838
Cow position: chr3:14184230-14184579 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 25

Conread position: 503-838
Cow position: chr3:45937167-45936845 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 162

Conread position: 504-702
Cow position: chr3:6769748-6769944 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 155
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 14, 0

Conread position: 504-838
Cow position: chr3:9233196-9233535 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 250
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 51, 34

Conread position: 504-838
Cow position: chr3:79070902-79071236 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 32

Conread position: 504-841
Cow position: chr3:72885010-72884654 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 26

Conread position: 514-818
Cow position: chr3:9770558-9770250 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 223
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 23, 149

Conread position: 524-805
Cow position: chr3:44090480-44090762 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 203, 106

Conread position: 525-825
Cow position: chr3:75055653-75055956 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 173

Conread position: 526-774
Cow position: chr3:81222467-81222217 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 201, 170

Conread position: 529-748
Cow position: chr3:63998352-63998133 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 180
Alignm E-value: 0
Alignm gaps (pig, cow): 190, 57

Conread position: 529-838
Cow position: chr3:32246314-32246637 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 219, 184

Conread position: 530-838
Cow position: chr3:6591726-6591395 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 238
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 116, 42

Conread position: 531-765
Cow position: chr3:83459116-83458878 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 64

Conread position: 532-755
Cow position: chr3:27524402-27524181 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 172
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 532-768
Cow position: chr3:79142118-79141879 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 182
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 154, 184

Conread position: 533-838
Cow position: chr3:63151641-63151973 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 238
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 141, 110

Conread position: 539-706
Cow position: chr3:73549275-73549103 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 140
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 5, 0

Conread position: 542-710
Cow position: chr3:13197180-13197018 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 124
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 104, 0

Conread position: 544-841
Cow position: chr3:65535112-65534804 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 210, 31

Conread position: 546-838
Cow position: chr3:7814452-7814151 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 201
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 58, 127

Conread position: 549-754
Cow position: chr3:4332940-4333141 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 165
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 0

Conread position: 552-769
Cow position: chr3:39403497-39403719 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 175
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 0

Conread position: 552-825
Cow position: chr3:14042965-14042672 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 211
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 167, 183

Conread position: 554-685
Cow position: chr3:67537521-67537652 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 104
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 554-767
Cow position: chr3:21840084-21839877 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 164
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 120, 108

Conread position: 555-754
Cow position: chr3:60788160-60787965 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 144
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 129, 0

Conread position: 555-755
Cow position: chr3:80996543-80996742 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 160
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 85, 147

Conread position: 557-721
Cow position: chr3:48920319-48920481 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 121
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 115, 0

Conread position: 557-724
Cow position: chr3:61961706-61961870 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 124
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 115, 0

Conread position: 557-769
Cow position: chr3:52851962-52852178 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 165
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 157, 120

Conread position: 564-769
Cow position: chr3:45948930-45948731 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 162
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 163, 42

Conread position: 564-791
Cow position: chr3:25730397-25730634 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 160
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 136, 0

Conread position: 565-725
Cow position: chr3:71703796-71703955 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 129
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 151, 117

Conread position: 570-838
Cow position: chr3:2308274-2307992 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 213
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 10, 54

Conread position: 572-754
Cow position: chr3:83432504-83432686 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 134
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 108, 155

Conread position: 579-699
Cow position: chr3:3709515-3709635 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 98
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 582-838
Cow position: chr3:18857552-18857302 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 189
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 17, 73

Conread position: 582-838
Cow position: chr3:23630412-23630678 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 193
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 170, 29

Conread position: 583-769
Cow position: chr3:58189809-58189988 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 149
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 146, 116

Conread position: 587-786
Cow position: chr3:76870025-76870224 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 144
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 130, 76

Conread position: 593-767
Cow position: chr3:23187430-23187231 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 151
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 53, 0

Conread position: 594-719
Cow position: chr3:2256304-2256426 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 100
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 77, 0

Conread position: 612-769
Cow position: chr3:81080647-81080804 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 130
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 115, 23

Conread position: 623-834
Cow position: chr3:48244034-48244253 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 166
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 104, 37

Conread position: 631-724
Cow position: chr3:48971217-48971310 (view UCSC Genome Browser custom track)
Alignm length: 94
Alignm identity: 85
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 634-769
Cow position: chr3:22812611-22812747 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 112
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 118, 0

Conread position: 638-838
Cow position: chr3:4446204-4446418 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 164
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 40, 81

Conread position: 639-769
Cow position: chr3:6559203-6559339 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 108
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 80, 0

Conread position: 663-828
Cow position: chr3:20351832-20351654 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 137
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 69, 0

Conread position: 665-838
Cow position: chr3:8708658-8708844 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 137
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 65, 0

Show alignments to all cow chromosomes.