Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8062A10.5 |
| Conread position: | 417-822 |
| Cow position: | chr3:3811667-3812075 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 290 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 45, 36 |
| Conread position: | 456-682 |
| Cow position: | chr3:83606009-83606232 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 28, 8 |
| Conread position: | 456-838 |
| Cow position: | chr3:79067462-79067071 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 19 |
| Conread position: | 457-769 |
| Cow position: | chr3:1902451-1902124 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 22, 7 |
| Conread position: | 457-836 |
| Cow position: | chr3:28595460-28595827 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 7 |
| Conread position: | 465-794 |
| Cow position: | chr3:8435309-8435640 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 239 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 50, 121 |
| Conread position: | 466-769 |
| Cow position: | chr3:32578666-32578965 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 27 |
| Conread position: | 466-830 |
| Cow position: | chr3:8146687-8147067 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 271 |
| Conread position: | 467-759 |
| Cow position: | chr3:78096367-78096089 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 211 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 467-776 |
| Cow position: | chr3:6645071-6644759 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 224 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 232, 26 |
| Conread position: | 477-727 |
| Cow position: | chr3:665468-665213 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 72, 85 |
| Conread position: | 478-838 |
| Cow position: | chr3:44095533-44095166 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 48 |
| Conread position: | 480-686 |
| Cow position: | chr3:53210476-53210680 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 193, 0 |
| Conread position: | 480-764 |
| Cow position: | chr3:25695748-25695465 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 96 |
| Conread position: | 482-835 |
| Cow position: | chr3:14038673-14039035 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 281, 219 |
| Conread position: | 485-671 |
| Cow position: | chr3:53211653-53211469 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 123, 148 |
| Conread position: | 489-718 |
| Cow position: | chr3:69279739-69279971 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 67, 36 |
| Conread position: | 490-655 |
| Cow position: | chr3:83980530-83980690 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 124 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 28, 38 |
| Conread position: | 490-702 |
| Cow position: | chr3:548938-549148 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 27, 40 |
| Conread position: | 490-725 |
| Cow position: | chr3:53911059-53910824 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 59, 27 |
| Conread position: | 490-845 |
| Cow position: | chr3:11951980-11952353 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 124 |
| Conread position: | 491-838 |
| Cow position: | chr3:16574782-16574419 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 497-769 |
| Cow position: | chr3:23178748-23178474 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 57 |
| Conread position: | 499-676 |
| Cow position: | chr3:39226605-39226776 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 500-838 |
| Cow position: | chr3:31110515-31110162 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 18 |
| Conread position: | 503-718 |
| Cow position: | chr3:52608607-52608825 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 12, 27 |
| Conread position: | 503-838 |
| Cow position: | chr3:14184230-14184579 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 25 |
| Conread position: | 503-838 |
| Cow position: | chr3:45937167-45936845 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 162 |
| Conread position: | 504-702 |
| Cow position: | chr3:6769748-6769944 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 155 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 504-838 |
| Cow position: | chr3:9233196-9233535 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 250 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 51, 34 |
| Conread position: | 504-838 |
| Cow position: | chr3:79070902-79071236 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 32 |
| Conread position: | 504-841 |
| Cow position: | chr3:72885010-72884654 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 26 |
| Conread position: | 514-818 |
| Cow position: | chr3:9770558-9770250 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 223 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 23, 149 |
| Conread position: | 524-805 |
| Cow position: | chr3:44090480-44090762 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 106 |
| Conread position: | 525-825 |
| Cow position: | chr3:75055653-75055956 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 173 |
| Conread position: | 526-774 |
| Cow position: | chr3:81222467-81222217 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 201, 170 |
| Conread position: | 529-748 |
| Cow position: | chr3:63998352-63998133 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 57 |
| Conread position: | 529-838 |
| Cow position: | chr3:32246314-32246637 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 219, 184 |
| Conread position: | 530-838 |
| Cow position: | chr3:6591726-6591395 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 238 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 116, 42 |
| Conread position: | 531-765 |
| Cow position: | chr3:83459116-83458878 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 64 |
| Conread position: | 532-755 |
| Cow position: | chr3:27524402-27524181 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 532-768 |
| Cow position: | chr3:79142118-79141879 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 182 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 154, 184 |
| Conread position: | 533-838 |
| Cow position: | chr3:63151641-63151973 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 238 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 141, 110 |
| Conread position: | 539-706 |
| Cow position: | chr3:73549275-73549103 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 542-710 |
| Cow position: | chr3:13197180-13197018 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 124 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 544-841 |
| Cow position: | chr3:65535112-65534804 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 31 |
| Conread position: | 546-838 |
| Cow position: | chr3:7814452-7814151 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 58, 127 |
| Conread position: | 549-754 |
| Cow position: | chr3:4332940-4333141 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 165 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 0 |
| Conread position: | 552-769 |
| Cow position: | chr3:39403497-39403719 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 552-825 |
| Cow position: | chr3:14042965-14042672 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 211 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 167, 183 |
| Conread position: | 554-685 |
| Cow position: | chr3:67537521-67537652 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 554-767 |
| Cow position: | chr3:21840084-21839877 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 120, 108 |
| Conread position: | 555-754 |
| Cow position: | chr3:60788160-60787965 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 555-755 |
| Cow position: | chr3:80996543-80996742 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 85, 147 |
| Conread position: | 557-721 |
| Cow position: | chr3:48920319-48920481 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 557-724 |
| Cow position: | chr3:61961706-61961870 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 557-769 |
| Cow position: | chr3:52851962-52852178 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 157, 120 |
| Conread position: | 564-769 |
| Cow position: | chr3:45948930-45948731 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 163, 42 |
| Conread position: | 564-791 |
| Cow position: | chr3:25730397-25730634 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 136, 0 |
| Conread position: | 565-725 |
| Cow position: | chr3:71703796-71703955 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 129 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 151, 117 |
| Conread position: | 570-838 |
| Cow position: | chr3:2308274-2307992 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 213 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 10, 54 |
| Conread position: | 572-754 |
| Cow position: | chr3:83432504-83432686 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 108, 155 |
| Conread position: | 579-699 |
| Cow position: | chr3:3709515-3709635 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 582-838 |
| Cow position: | chr3:18857552-18857302 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 189 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 17, 73 |
| Conread position: | 582-838 |
| Cow position: | chr3:23630412-23630678 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 170, 29 |
| Conread position: | 583-769 |
| Cow position: | chr3:58189809-58189988 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 146, 116 |
| Conread position: | 587-786 |
| Cow position: | chr3:76870025-76870224 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 144 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 130, 76 |
| Conread position: | 593-767 |
| Cow position: | chr3:23187430-23187231 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 594-719 |
| Cow position: | chr3:2256304-2256426 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 100 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 612-769 |
| Cow position: | chr3:81080647-81080804 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 115, 23 |
| Conread position: | 623-834 |
| Cow position: | chr3:48244034-48244253 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 104, 37 |
| Conread position: | 631-724 |
| Cow position: | chr3:48971217-48971310 (view UCSC Genome Browser custom track) |
| Alignm length: | 94 |
| Alignm identity: | 85 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 634-769 |
| Cow position: | chr3:22812611-22812747 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 112 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 638-838 |
| Cow position: | chr3:4446204-4446418 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 40, 81 |
| Conread position: | 639-769 |
| Cow position: | chr3:6559203-6559339 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 108 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 663-828 |
| Cow position: | chr3:20351832-20351654 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 665-838 |
| Cow position: | chr3:8708658-8708844 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 65, 0 |
Show alignments to all cow chromosomes.