Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8062A10.5 |
| Conread position: | 443-668 |
| Cow position: | chr4:181486-181708 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 160 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 18, 43 |
| Conread position: | 456-773 |
| Cow position: | chr4:25188728-25189039 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 227 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 50, 8 |
| Conread position: | 457-724 |
| Cow position: | chr4:16942425-16942154 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 7 |
| Conread position: | 457-838 |
| Cow position: | chr4:45224641-45224264 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 274 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 23, 7 |
| Conread position: | 462-773 |
| Cow position: | chr4:44425357-44425671 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 223 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 91, 5 |
| Conread position: | 466-834 |
| Cow position: | chr4:43283653-43284043 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 466-838 |
| Cow position: | chr4:54355944-54355578 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 67 |
| Conread position: | 469-744 |
| Cow position: | chr4:23681357-23681087 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 201 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 11, 71 |
| Conread position: | 473-767 |
| Cow position: | chr4:59858245-59857952 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 205 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 246, 190 |
| Conread position: | 475-636 |
| Cow position: | chr4:44754120-44754278 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 123 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 45, 18 |
| Conread position: | 477-769 |
| Cow position: | chr4:45382913-45383204 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 243, 75 |
| Conread position: | 479-834 |
| Cow position: | chr4:42364992-42364621 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 261 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 38, 14 |
| Conread position: | 479-834 |
| Cow position: | chr4:43563825-43563464 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 262 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 38, 14 |
| Conread position: | 479-834 |
| Cow position: | chr4:43566937-43566576 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 262 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 38, 14 |
| Conread position: | 480-749 |
| Cow position: | chr4:40249786-40249514 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 200 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 24, 225 |
| Conread position: | 480-765 |
| Cow position: | chr4:3901627-3901915 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 228 |
| Conread position: | 482-838 |
| Cow position: | chr4:57643846-57644210 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 49 |
| Conread position: | 483-837 |
| Cow position: | chr4:64963545-64963195 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 240 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 32, 91 |
| Conread position: | 485-721 |
| Cow position: | chr4:38951833-38951594 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 183 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 56, 61 |
| Conread position: | 489-730 |
| Cow position: | chr4:49764925-49765169 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 218 |
| Conread position: | 490-671 |
| Cow position: | chr4:4020926-4020749 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 28, 11 |
| Conread position: | 490-706 |
| Cow position: | chr4:59577910-59577693 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 54, 35 |
| Conread position: | 490-838 |
| Cow position: | chr4:59265757-59265411 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 141 |
| Conread position: | 490-838 |
| Cow position: | chr4:63549097-63548729 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 13 |
| Conread position: | 491-794 |
| Cow position: | chr4:32844105-32843789 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 227 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 46, 133 |
| Conread position: | 491-838 |
| Cow position: | chr4:4126047-4125702 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 236, 15 |
| Conread position: | 493-719 |
| Cow position: | chr4:36505979-36505759 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 171 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 51, 32 |
| Conread position: | 493-838 |
| Cow position: | chr4:37548761-37548400 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 250 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 37, 61 |
| Conread position: | 496-767 |
| Cow position: | chr4:37857512-37857235 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 203 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 29, 179 |
| Conread position: | 499-835 |
| Cow position: | chr4:55648202-55647868 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 238 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 232, 31 |
| Conread position: | 499-838 |
| Cow position: | chr4:18797735-18797379 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 226, 0 |
| Conread position: | 502-706 |
| Cow position: | chr4:39337145-39337350 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 54, 183 |
| Conread position: | 503-756 |
| Cow position: | chr4:29119340-29119589 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 27 |
| Conread position: | 503-769 |
| Cow position: | chr4:18283783-18283517 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 195 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 52, 70 |
| Conread position: | 503-774 |
| Cow position: | chr4:49742852-49743111 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 199, 15 |
| Conread position: | 504-828 |
| Cow position: | chr4:52516598-52516928 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 32 |
| Conread position: | 504-834 |
| Cow position: | chr4:63905264-63904917 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 29 |
| Conread position: | 504-838 |
| Cow position: | chr4:53651710-53652054 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 249 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 13, 59 |
| Conread position: | 505-769 |
| Cow position: | chr4:35070252-35070519 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 524-838 |
| Cow position: | chr4:54379032-54379360 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 301 |
| Conread position: | 527-797 |
| Cow position: | chr4:5207838-5208113 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 198 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 207, 57 |
| Conread position: | 529-676 |
| Cow position: | chr4:58787377-58787229 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 529-690 |
| Cow position: | chr4:4031947-4032107 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 529-754 |
| Cow position: | chr4:565261-565036 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 196 |
| Conread position: | 529-754 |
| Cow position: | chr4:52336738-52336953 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 43, 109 |
| Conread position: | 530-679 |
| Cow position: | chr4:165976-165827 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 110 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 530-838 |
| Cow position: | chr4:54377693-54377374 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 142 |
| Conread position: | 531-774 |
| Cow position: | chr4:29232286-29232528 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 532-769 |
| Cow position: | chr4:33002471-33002711 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 537-763 |
| Cow position: | chr4:1226622-1226398 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 155 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 148, 108 |
| Conread position: | 539-774 |
| Cow position: | chr4:65653795-65654032 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 179 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 5, 14 |
| Conread position: | 543-754 |
| Cow position: | chr4:28227536-28227330 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 169 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 5, 19 |
| Conread position: | 544-825 |
| Cow position: | chr4:41413836-41414117 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 202 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 173, 73 |
| Conread position: | 545-769 |
| Cow position: | chr4:66853729-66853944 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 31, 138 |
| Conread position: | 548-771 |
| Cow position: | chr4:5815528-5815308 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 8, 15 |
| Conread position: | 552-838 |
| Cow position: | chr4:4110183-4109904 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 190 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 40, 10 |
| Conread position: | 552-838 |
| Cow position: | chr4:18407069-18407352 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 195 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 167, 11 |
| Conread position: | 554-767 |
| Cow position: | chr4:68310598-68310806 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 555-763 |
| Cow position: | chr4:14947332-14947540 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 162 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 123, 76 |
| Conread position: | 555-838 |
| Cow position: | chr4:30016964-30016666 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 193 |
| Conread position: | 556-719 |
| Cow position: | chr4:17094088-17093925 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 558-744 |
| Cow position: | chr4:588011-587828 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 14, 79 |
| Conread position: | 562-838 |
| Cow position: | chr4:32803627-32803913 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 218 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 167, 33 |
| Conread position: | 563-838 |
| Cow position: | chr4:56263773-56263490 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 206 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 154, 109 |
| Conread position: | 568-769 |
| Cow position: | chr4:32713354-32713550 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 154 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 159, 103 |
| Conread position: | 570-774 |
| Cow position: | chr4:39338260-39338054 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 163 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 142, 0 |
| Conread position: | 574-763 |
| Cow position: | chr4:32773779-32773590 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 158 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 144 |
| Conread position: | 574-763 |
| Cow position: | chr4:43643305-43643487 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 127, 53 |
| Conread position: | 578-748 |
| Cow position: | chr4:29743430-29743599 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 148, 0 |
| Conread position: | 582-840 |
| Cow position: | chr4:25153122-25153376 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 132, 74 |
| Conread position: | 590-767 |
| Cow position: | chr4:37343344-37343523 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 151 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 590-838 |
| Cow position: | chr4:23613009-23613264 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 197 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 177, 83 |
| Conread position: | 591-826 |
| Cow position: | chr4:61681032-61680796 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 157, 109 |
| Conread position: | 632-828 |
| Cow position: | chr4:37509806-37509598 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 638-828 |
| Cow position: | chr4:45879029-45879217 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 120, 42 |
| Conread position: | 663-769 |
| Cow position: | chr4:26617580-26617687 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 92 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 68, 0 |
Show alignments to all cow chromosomes.