Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8062A10.5 |
| Conread position: | 416-636 |
| Cow position: | chr5:9887498-9887261 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 168 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 33, 127 |
| Conread position: | 444-838 |
| Cow position: | chr5:42710000-42709615 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 286 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 37, 10 |
| Conread position: | 457-774 |
| Cow position: | chr5:47768045-47767733 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 296, 7 |
| Conread position: | 466-838 |
| Cow position: | chr5:16177441-16177062 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 265, 242 |
| Conread position: | 467-662 |
| Cow position: | chr5:20848059-20848256 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 467-748 |
| Cow position: | chr5:73567071-73566793 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 89, 26 |
| Conread position: | 468-767 |
| Cow position: | chr5:6390967-6390669 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 219 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 13, 60 |
| Conread position: | 473-721 |
| Cow position: | chr5:49879074-49879314 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 479-680 |
| Cow position: | chr5:64190896-64190701 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 37, 14 |
| Conread position: | 479-838 |
| Cow position: | chr5:59117732-59118104 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 269 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 23, 15 |
| Conread position: | 480-725 |
| Cow position: | chr5:9520569-9520334 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 55, 147 |
| Conread position: | 482-670 |
| Cow position: | chr5:39324378-39324566 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 132 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 18, 44 |
| Conread position: | 484-767 |
| Cow position: | chr5:45564949-45565244 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 211 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 28, 37 |
| Conread position: | 485-737 |
| Cow position: | chr5:60922433-60922180 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 188 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 188, 67 |
| Conread position: | 485-769 |
| Cow position: | chr5:3396793-3396508 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 183 |
| Conread position: | 490-680 |
| Cow position: | chr5:47836868-47837054 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 26, 51 |
| Conread position: | 490-725 |
| Cow position: | chr5:43087405-43087170 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 52 |
| Conread position: | 490-769 |
| Cow position: | chr5:41330724-41330442 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 207 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 226, 58 |
| Conread position: | 490-835 |
| Cow position: | chr5:2188513-2188869 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 39 |
| Conread position: | 490-838 |
| Cow position: | chr5:63395285-63395654 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 258 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 59, 39 |
| Conread position: | 492-765 |
| Cow position: | chr5:75056126-75056405 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 25, 193 |
| Conread position: | 492-769 |
| Cow position: | chr5:59045124-59044852 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 10 |
| Conread position: | 492-838 |
| Cow position: | chr5:26464959-26464598 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 252 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 67, 11 |
| Conread position: | 492-841 |
| Cow position: | chr5:17391811-17391438 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 268 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 64, 12 |
| Conread position: | 492-842 |
| Cow position: | chr5:25479155-25479518 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 261 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 58, 11 |
| Conread position: | 494-834 |
| Cow position: | chr5:75866671-75867019 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 240 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 234, 69 |
| Conread position: | 499-702 |
| Cow position: | chr5:63078505-63078309 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 499-838 |
| Cow position: | chr5:49609839-49610175 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 236 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 106, 156 |
| Conread position: | 501-838 |
| Cow position: | chr5:45196389-45196727 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 214, 28 |
| Conread position: | 502-724 |
| Cow position: | chr5:12691112-12690897 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 15, 24 |
| Conread position: | 503-688 |
| Cow position: | chr5:59053569-59053384 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 148 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 503-756 |
| Cow position: | chr5:31249254-31249504 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 192 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 52, 70 |
| Conread position: | 503-768 |
| Cow position: | chr5:63793850-63793593 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 12, 24 |
| Conread position: | 503-769 |
| Cow position: | chr5:47459865-47460128 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 152 |
| Conread position: | 503-828 |
| Cow position: | chr5:39323245-39323582 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 242 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 49, 22 |
| Conread position: | 503-838 |
| Cow position: | chr5:57628666-57629013 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 246 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 172, 160 |
| Conread position: | 504-754 |
| Cow position: | chr5:40388716-40388465 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 80 |
| Conread position: | 504-774 |
| Cow position: | chr5:34024803-34025072 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 26 |
| Conread position: | 505-702 |
| Cow position: | chr5:56269393-56269590 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 155 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 11, 25 |
| Conread position: | 505-834 |
| Cow position: | chr5:39338516-39338863 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 31 |
| Conread position: | 505-851 |
| Cow position: | chr5:25444973-25444609 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 28 |
| Conread position: | 509-763 |
| Cow position: | chr5:9328896-9328656 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 218, 11 |
| Conread position: | 524-710 |
| Cow position: | chr5:43658622-43658806 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 12, 5 |
| Conread position: | 529-774 |
| Cow position: | chr5:44697217-44696972 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 47 |
| Conread position: | 529-774 |
| Cow position: | chr5:63252451-63252201 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 145 |
| Conread position: | 529-838 |
| Cow position: | chr5:59331775-59332072 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 11, 24 |
| Conread position: | 532-724 |
| Cow position: | chr5:51822591-51822782 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 140, 20 |
| Conread position: | 538-838 |
| Cow position: | chr5:47838145-47837828 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 539-753 |
| Cow position: | chr5:8132693-8132909 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 167 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 5, 190 |
| Conread position: | 540-671 |
| Cow position: | chr5:2489618-2489487 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 16, 33 |
| Conread position: | 540-774 |
| Cow position: | chr5:42140620-42140393 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 180, 5 |
| Conread position: | 545-754 |
| Cow position: | chr5:45710130-45710336 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 10, 131 |
| Conread position: | 547-828 |
| Cow position: | chr5:29576289-29576569 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 42, 5 |
| Conread position: | 549-761 |
| Cow position: | chr5:7507469-7507261 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 131, 13 |
| Conread position: | 549-769 |
| Cow position: | chr5:53582774-53582550 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 172 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 552-666 |
| Cow position: | chr5:55192499-55192609 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 94 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 552-668 |
| Cow position: | chr5:31566950-31567061 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 95 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 552-773 |
| Cow position: | chr5:20840567-20840340 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 160, 120 |
| Conread position: | 552-774 |
| Cow position: | chr5:43087723-43087940 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 160 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 129, 11 |
| Conread position: | 555-745 |
| Cow position: | chr5:33977756-33977568 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 170, 108 |
| Conread position: | 555-748 |
| Cow position: | chr5:60041805-60041612 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 160 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 555-774 |
| Cow position: | chr5:18391572-18391786 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 202, 67 |
| Conread position: | 555-774 |
| Cow position: | chr5:59042787-59042570 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 555-774 |
| Cow position: | chr5:59096720-59096505 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 557-705 |
| Cow position: | chr5:60277984-60277838 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 111 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 42, 11 |
| Conread position: | 558-773 |
| Cow position: | chr5:74638944-74639160 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 202, 0 |
| Conread position: | 559-769 |
| Cow position: | chr5:66584572-66584356 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 8, 118 |
| Conread position: | 562-754 |
| Cow position: | chr5:12882538-12882356 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 563-764 |
| Cow position: | chr5:43484128-43483928 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 117, 17 |
| Conread position: | 571-838 |
| Cow position: | chr5:31486842-31486564 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 152 |
| Conread position: | 578-711 |
| Cow position: | chr5:8230791-8230660 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 103 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 578-750 |
| Cow position: | chr5:64185250-64185417 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 149, 65 |
| Conread position: | 579-732 |
| Cow position: | chr5:73564556-73564403 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 585-770 |
| Cow position: | chr5:43401285-43401105 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 147, 46 |
| Conread position: | 588-703 |
| Cow position: | chr5:74714678-74714792 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 92 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 594-838 |
| Cow position: | chr5:61773723-61773982 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 101, 141 |
| Conread position: | 630-769 |
| Cow position: | chr5:59099561-59099419 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 59, 21 |
| Conread position: | 631-838 |
| Cow position: | chr5:9886818-9886593 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 662-835 |
| Cow position: | chr5:51247614-51247797 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 55, 71 |
Show alignments to all cow chromosomes.