Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8062A10.5 |
| Conread position: | 433-769 |
| Cow position: | chr6:44609936-44610272 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 242 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 28, 62 |
| Conread position: | 456-767 |
| Cow position: | chr6:68263829-68263524 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 8 |
| Conread position: | 456-838 |
| Cow position: | chr6:17291832-17291437 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 8 |
| Conread position: | 457-748 |
| Cow position: | chr6:1055986-1055709 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 464-842 |
| Cow position: | chr6:418028-417636 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 83 |
| Conread position: | 467-767 |
| Cow position: | chr6:62582938-62583237 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 26 |
| Conread position: | 467-834 |
| Cow position: | chr6:15264910-15264537 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 10 |
| Conread position: | 467-838 |
| Cow position: | chr6:29838526-29838909 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 8 |
| Conread position: | 470-769 |
| Cow position: | chr6:681888-682178 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 8, 190 |
| Conread position: | 473-721 |
| Cow position: | chr6:69054185-69053939 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 125, 200 |
| Conread position: | 480-702 |
| Cow position: | chr6:16184612-16184399 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 192, 49 |
| Conread position: | 483-834 |
| Cow position: | chr6:4387357-4387729 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 254 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 490-699 |
| Cow position: | chr6:16611932-16611723 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 30, 167 |
| Conread position: | 490-770 |
| Cow position: | chr6:60414795-60415068 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 210 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 35, 59 |
| Conread position: | 490-838 |
| Cow position: | chr6:35751553-35751199 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 279, 173 |
| Conread position: | 490-838 |
| Cow position: | chr6:43603448-43603081 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 336 |
| Conread position: | 491-671 |
| Cow position: | chr6:374608-374429 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 491-835 |
| Cow position: | chr6:63011831-63012172 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 234 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 27, 31 |
| Conread position: | 492-765 |
| Cow position: | chr6:32688224-32687952 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 45, 172 |
| Conread position: | 499-769 |
| Cow position: | chr6:26638042-26637775 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 232, 83 |
| Conread position: | 502-825 |
| Cow position: | chr6:68590613-68590946 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 235 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 16, 30 |
| Conread position: | 503-688 |
| Cow position: | chr6:48212091-48211906 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 52, 16 |
| Conread position: | 503-769 |
| Cow position: | chr6:65706536-65706271 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 194 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 171, 24 |
| Conread position: | 503-838 |
| Cow position: | chr6:20284553-20284890 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 234 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 199, 133 |
| Conread position: | 503-838 |
| Cow position: | chr6:61410179-61409835 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 139 |
| Conread position: | 504-753 |
| Cow position: | chr6:44758051-44757804 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 186 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 11, 28 |
| Conread position: | 504-838 |
| Cow position: | chr6:16552307-16551955 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 251 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 51, 29 |
| Conread position: | 511-768 |
| Cow position: | chr6:29679058-29678797 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 26, 13 |
| Conread position: | 524-779 |
| Cow position: | chr6:59218650-59218905 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 157 |
| Conread position: | 524-834 |
| Cow position: | chr6:55972339-55972658 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 527-769 |
| Cow position: | chr6:68609007-68608765 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 28, 9 |
| Conread position: | 528-834 |
| Cow position: | chr6:2592896-2592588 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 69 |
| Conread position: | 529-769 |
| Cow position: | chr6:18414327-18414086 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 188 |
| Conread position: | 529-769 |
| Cow position: | chr6:24186584-24186811 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 225, 89 |
| Conread position: | 529-773 |
| Cow position: | chr6:44232192-44231947 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 177 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 529-786 |
| Cow position: | chr6:63028783-63029043 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 165 |
| Conread position: | 532-740 |
| Cow position: | chr6:55503140-55503347 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 165 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 532-828 |
| Cow position: | chr6:28440620-28440923 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 225 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 23, 82 |
| Conread position: | 536-754 |
| Cow position: | chr6:22817889-22817677 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 539-744 |
| Cow position: | chr6:8957016-8957218 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 5, 146 |
| Conread position: | 539-745 |
| Cow position: | chr6:45660225-45660027 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 5, 98 |
| Conread position: | 539-835 |
| Cow position: | chr6:51396227-51395914 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 73 |
| Conread position: | 547-756 |
| Cow position: | chr6:61811384-61811584 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 180, 116 |
| Conread position: | 547-787 |
| Cow position: | chr6:67981673-67981430 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 21 |
| Conread position: | 549-682 |
| Cow position: | chr6:26554189-26554322 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 549-774 |
| Cow position: | chr6:67946974-67946752 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 170, 13 |
| Conread position: | 552-763 |
| Cow position: | chr6:5338622-5338408 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 205 |
| Conread position: | 552-768 |
| Cow position: | chr6:40837093-40836877 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 128, 10 |
| Conread position: | 554-852 |
| Cow position: | chr6:38881811-38882118 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 217 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 163, 9 |
| Conread position: | 557-767 |
| Cow position: | chr6:3141194-3140984 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 196, 101 |
| Conread position: | 562-697 |
| Cow position: | chr6:16549055-16548922 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 104 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 12, 76 |
| Conread position: | 571-728 |
| Cow position: | chr6:67990633-67990477 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 578-769 |
| Cow position: | chr6:35187533-35187719 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 164 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 580-680 |
| Cow position: | chr6:38403422-38403523 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 86 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 585-767 |
| Cow position: | chr6:61130692-61130871 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 142 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 131, 100 |
| Conread position: | 599-773 |
| Cow position: | chr6:28598575-28598402 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 120, 73 |
| Conread position: | 600-754 |
| Cow position: | chr6:24182370-24182219 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 634-765 |
| Cow position: | chr6:44674681-44674804 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 104 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 69, 0 |
Show alignments to all cow chromosomes.