Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8062A10.5 |
| Conread position: | 197-838 |
| Cow position: | chr7:42320300-42320941 (view UCSC Genome Browser custom track) |
| Alignm length: | 650 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 303, 493 |
| Conread position: | 456-838 |
| Cow position: | chr7:37681191-37680799 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 8 |
| Conread position: | 467-751 |
| Cow position: | chr7:16292447-16292166 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 207 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 201, 26 |
| Conread position: | 467-834 |
| Cow position: | chr7:35445444-35445059 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 266 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 11, 59 |
| Conread position: | 467-838 |
| Cow position: | chr7:26943034-26943419 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 10 |
| Conread position: | 473-721 |
| Cow position: | chr7:55303471-55303220 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 63, 39 |
| Conread position: | 479-769 |
| Cow position: | chr7:40960645-40960933 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 9 |
| Conread position: | 479-838 |
| Cow position: | chr7:33443916-33444285 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 269, 14 |
| Conread position: | 485-765 |
| Cow position: | chr7:27117454-27117159 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 217 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 33, 41 |
| Conread position: | 490-636 |
| Cow position: | chr7:62672276-62672422 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 108 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 51, 63 |
| Conread position: | 490-730 |
| Cow position: | chr7:59938495-59938247 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 47, 222 |
| Conread position: | 490-772 |
| Cow position: | chr7:43987260-43987533 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 182, 120 |
| Conread position: | 491-729 |
| Cow position: | chr7:24578285-24578520 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 158, 38 |
| Conread position: | 491-834 |
| Cow position: | chr7:26776162-26776518 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 257 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 43, 34 |
| Conread position: | 492-763 |
| Cow position: | chr7:50741153-50740882 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 240, 130 |
| Conread position: | 492-768 |
| Cow position: | chr7:14366839-14367115 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 36 |
| Conread position: | 495-838 |
| Cow position: | chr7:57850929-57850575 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 36 |
| Conread position: | 499-721 |
| Cow position: | chr7:23293488-23293272 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 218, 181 |
| Conread position: | 502-834 |
| Cow position: | chr7:24035008-24035356 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 23 |
| Conread position: | 524-838 |
| Cow position: | chr7:27094433-27094774 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 18, 175 |
| Conread position: | 526-830 |
| Cow position: | chr7:42325104-42325421 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 67 |
| Conread position: | 526-838 |
| Cow position: | chr7:60969295-60969624 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 233 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 30, 19 |
| Conread position: | 532-718 |
| Cow position: | chr7:65292374-65292192 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 532-718 |
| Cow position: | chr7:65960113-65959930 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 532-838 |
| Cow position: | chr7:53237037-53236715 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 532-841 |
| Cow position: | chr7:6166114-6166427 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 20 |
| Conread position: | 535-774 |
| Cow position: | chr7:29484760-29484997 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 33 |
| Conread position: | 545-835 |
| Cow position: | chr7:6164333-6164615 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 212 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 42, 9 |
| Conread position: | 545-838 |
| Cow position: | chr7:12482357-12482667 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 547-759 |
| Cow position: | chr7:23653087-23653305 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 549-767 |
| Cow position: | chr7:22019343-22019125 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 170 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 170, 69 |
| Conread position: | 554-822 |
| Cow position: | chr7:10729074-10729340 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 193 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 97, 35 |
| Conread position: | 554-838 |
| Cow position: | chr7:54566753-54567045 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 196, 67 |
| Conread position: | 555-760 |
| Cow position: | chr7:21038943-21038738 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 555-774 |
| Cow position: | chr7:4243790-4244008 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 162, 108 |
| Conread position: | 555-774 |
| Cow position: | chr7:62818943-62818723 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 0 |
| Conread position: | 555-838 |
| Cow position: | chr7:18296002-18296295 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 59 |
| Conread position: | 555-838 |
| Cow position: | chr7:37622599-37622890 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 198, 100 |
| Conread position: | 574-838 |
| Cow position: | chr7:9434527-9434273 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 143, 122 |
| Conread position: | 578-767 |
| Cow position: | chr7:41113934-41113749 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 135 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 579-770 |
| Cow position: | chr7:5876718-5876907 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 182, 157 |
| Conread position: | 583-828 |
| Cow position: | chr7:16697131-16697375 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 170, 113 |
| Conread position: | 586-749 |
| Cow position: | chr7:2982529-2982696 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 58, 112 |
| Conread position: | 590-822 |
| Cow position: | chr7:302685-302931 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 172 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 110, 82 |
| Conread position: | 594-767 |
| Cow position: | chr7:64072980-64072809 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 99, 116 |
| Conread position: | 605-769 |
| Cow position: | chr7:69123148-69123313 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 130 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 33, 67 |
| Conread position: | 610-782 |
| Cow position: | chr7:7074106-7073934 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 107, 53 |
| Conread position: | 612-838 |
| Cow position: | chr7:62074078-62074306 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 174 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 137, 194 |
| Conread position: | 627-838 |
| Cow position: | chr7:33921331-33921551 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 105, 170 |
| Conread position: | 638-774 |
| Cow position: | chr7:31947139-31947278 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 107 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 650-825 |
| Cow position: | chr7:57266925-57266748 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 133 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 39, 77 |
| Conread position: | 669-846 |
| Cow position: | chr7:2386567-2386382 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 693-838 |
| Cow position: | chr7:24578704-24578843 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 39, 29 |
Show alignments to all cow chromosomes.