Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8062A10.5 |
| Conread position: | 416-765 |
| Cow position: | chr8:17430612-17430965 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 255 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 50, 26 |
| Conread position: | 456-754 |
| Cow position: | chr8:9292751-9293039 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 99, 8 |
| Conread position: | 456-769 |
| Cow position: | chr8:49987305-49986989 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 229 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 60, 8 |
| Conread position: | 457-769 |
| Cow position: | chr8:25386453-25386759 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 7 |
| Conread position: | 465-725 |
| Cow position: | chr8:5669506-5669761 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 195 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 28, 56 |
| Conread position: | 467-755 |
| Cow position: | chr8:45410064-45409784 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 48, 26 |
| Conread position: | 467-779 |
| Cow position: | chr8:1649443-1649134 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 26 |
| Conread position: | 468-768 |
| Cow position: | chr8:60577640-60577947 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 34 |
| Conread position: | 470-791 |
| Cow position: | chr8:811587-811905 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 227 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 63, 16 |
| Conread position: | 478-838 |
| Cow position: | chr8:40114295-40114656 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 253 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 41, 8 |
| Conread position: | 479-838 |
| Cow position: | chr8:22040068-22039704 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 240 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 34, 47 |
| Conread position: | 480-699 |
| Cow position: | chr8:33160719-33160939 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 165 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 490-666 |
| Cow position: | chr8:6871580-6871399 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 144, 27 |
| Conread position: | 490-688 |
| Cow position: | chr8:46794406-46794607 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 490-765 |
| Cow position: | chr8:49673164-49672886 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 52 |
| Conread position: | 491-838 |
| Cow position: | chr8:48454996-48454620 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 159 |
| Conread position: | 492-706 |
| Cow position: | chr8:5246710-5246923 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 167 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 492-831 |
| Cow position: | chr8:20661105-20660752 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 253 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 45, 77 |
| Conread position: | 503-754 |
| Cow position: | chr8:24688407-24688155 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 503-767 |
| Cow position: | chr8:12210610-12210342 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 30 |
| Conread position: | 503-773 |
| Cow position: | chr8:1442845-1443114 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 250, 49 |
| Conread position: | 503-837 |
| Cow position: | chr8:25797526-25797861 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 27 |
| Conread position: | 503-838 |
| Cow position: | chr8:1648056-1647717 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 52, 30 |
| Conread position: | 504-841 |
| Cow position: | chr8:1653694-1654043 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 244 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 182, 48 |
| Conread position: | 509-724 |
| Cow position: | chr8:34835728-34835941 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 159 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 136, 171 |
| Conread position: | 509-826 |
| Cow position: | chr8:17705190-17705513 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 510-767 |
| Cow position: | chr8:48674033-48674290 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 192 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 28, 52 |
| Conread position: | 511-841 |
| Cow position: | chr8:23352491-23352824 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 45 |
| Conread position: | 524-760 |
| Cow position: | chr8:39059667-39059901 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 28 |
| Conread position: | 524-767 |
| Cow position: | chr8:848503-848738 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 28 |
| Conread position: | 526-745 |
| Cow position: | chr8:49882185-49881963 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 529-763 |
| Cow position: | chr8:7004354-7004125 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 179 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 144, 108 |
| Conread position: | 530-670 |
| Cow position: | chr8:4060397-4060256 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 108 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 531-838 |
| Cow position: | chr8:57724553-57724246 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 124 |
| Conread position: | 532-769 |
| Cow position: | chr8:35558700-35558937 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 164 |
| Conread position: | 552-768 |
| Cow position: | chr8:45558847-45558634 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 198, 20 |
| Conread position: | 552-838 |
| Cow position: | chr8:60000990-60000697 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 191 |
| Conread position: | 556-761 |
| Cow position: | chr8:22754495-22754293 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 184, 117 |
| Conread position: | 556-835 |
| Cow position: | chr8:35479628-35479352 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 216 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 113, 65 |
| Conread position: | 557-753 |
| Cow position: | chr8:37441753-37441949 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 155 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 557-754 |
| Cow position: | chr8:51963783-51963980 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 155 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 178, 184 |
| Conread position: | 562-838 |
| Cow position: | chr8:12084382-12084673 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 213 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 133, 165 |
| Conread position: | 563-852 |
| Cow position: | chr8:2957616-2957918 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 82, 19 |
| Conread position: | 571-763 |
| Cow position: | chr8:5671322-5671128 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 150 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 67, 102 |
| Conread position: | 571-769 |
| Cow position: | chr8:19024916-19024711 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 145, 101 |
| Conread position: | 571-823 |
| Cow position: | chr8:30941941-30942197 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 183, 130 |
| Conread position: | 578-834 |
| Cow position: | chr8:49364192-49363924 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 200 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 88, 27 |
| Conread position: | 579-725 |
| Cow position: | chr8:16231458-16231602 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 580-748 |
| Cow position: | chr8:42640931-42640762 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 141 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 149, 0 |
| Conread position: | 582-680 |
| Cow position: | chr8:52925276-52925178 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 88 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 582-754 |
| Cow position: | chr8:36224788-36224960 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 57, 145 |
| Conread position: | 583-773 |
| Cow position: | chr8:59224538-59224351 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 147 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 585-718 |
| Cow position: | chr8:51902643-51902776 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 54, 8 |
| Conread position: | 585-769 |
| Cow position: | chr8:24959384-24959568 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 153 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 142, 152 |
| Conread position: | 592-763 |
| Cow position: | chr8:14961214-14961385 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 135, 86 |
| Conread position: | 616-838 |
| Cow position: | chr8:19946700-19946925 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 138, 0 |
| Conread position: | 630-834 |
| Cow position: | chr8:31732019-31732244 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 639-768 |
| Cow position: | chr8:17928637-17928507 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 104 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 88, 116 |
| Conread position: | 680-838 |
| Cow position: | chr8:5247125-5247292 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 33, 0 |
Show alignments to all cow chromosomes.