Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8062A10.5 |
| Conread position: | 416-834 |
| Cow position: | chr9:102467-102056 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 287 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 42, 26 |
| Conread position: | 430-834 |
| Cow position: | chr9:49582970-49582578 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 34 |
| Conread position: | 460-675 |
| Cow position: | chr9:47520353-47520141 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 27, 20 |
| Conread position: | 464-838 |
| Cow position: | chr9:25032806-25032423 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 200 |
| Conread position: | 465-838 |
| Cow position: | chr9:28281558-28281951 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 239 |
| Conread position: | 466-765 |
| Cow position: | chr9:6317323-6317025 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 28 |
| Conread position: | 466-838 |
| Cow position: | chr9:6656258-6655875 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 28 |
| Conread position: | 466-838 |
| Cow position: | chr9:20983872-20984262 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 104 |
| Conread position: | 467-769 |
| Cow position: | chr9:11418516-11418217 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 217 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 86, 27 |
| Conread position: | 470-826 |
| Cow position: | chr9:9390740-9391109 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 257 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 10, 24 |
| Conread position: | 473-724 |
| Cow position: | chr9:22953678-22953430 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 44, 106 |
| Conread position: | 475-767 |
| Cow position: | chr9:7093810-7094094 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 213 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 104, 18 |
| Conread position: | 477-838 |
| Cow position: | chr9:55032972-55033350 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 250, 122 |
| Conread position: | 482-755 |
| Cow position: | chr9:60178579-60178849 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 206 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 39, 114 |
| Conread position: | 490-769 |
| Cow position: | chr9:13453741-13453465 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 37 |
| Conread position: | 491-679 |
| Cow position: | chr9:6721787-6721600 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 492-764 |
| Cow position: | chr9:62925281-62925551 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 33 |
| Conread position: | 493-838 |
| Cow position: | chr9:10896873-10896503 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 33 |
| Conread position: | 499-696 |
| Cow position: | chr9:28599377-28599181 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 19, 28 |
| Conread position: | 499-724 |
| Cow position: | chr9:31644263-31644036 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 169 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 38, 26 |
| Conread position: | 502-754 |
| Cow position: | chr9:6163703-6163956 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 232, 0 |
| Conread position: | 503-669 |
| Cow position: | chr9:60816254-60816421 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 12, 34 |
| Conread position: | 503-670 |
| Cow position: | chr9:6593920-6594082 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 64, 32 |
| Conread position: | 503-774 |
| Cow position: | chr9:10571639-10571379 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 202 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 96, 49 |
| Conread position: | 503-779 |
| Cow position: | chr9:44718364-44718086 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 0 |
| Conread position: | 503-838 |
| Cow position: | chr9:48610668-48610317 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 34 |
| Conread position: | 504-670 |
| Cow position: | chr9:62635688-62635519 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 14, 29 |
| Conread position: | 504-769 |
| Cow position: | chr9:32609431-32609168 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 195 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 52, 32 |
| Conread position: | 504-769 |
| Cow position: | chr9:58469593-58469851 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 228, 21 |
| Conread position: | 504-838 |
| Cow position: | chr9:44560175-44559825 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 32 |
| Conread position: | 510-769 |
| Cow position: | chr9:10894333-10894580 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 199 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 222, 16 |
| Conread position: | 510-838 |
| Cow position: | chr9:40476922-40477246 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 36 |
| Conread position: | 529-734 |
| Cow position: | chr9:17990008-17989807 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 63, 153 |
| Conread position: | 535-711 |
| Cow position: | chr9:36420672-36420848 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 136 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 545-697 |
| Cow position: | chr9:44559514-44559660 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 129, 74 |
| Conread position: | 549-686 |
| Cow position: | chr9:601098-601235 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 102 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 549-825 |
| Cow position: | chr9:8204160-8203870 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 212 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 192, 177 |
| Conread position: | 549-838 |
| Cow position: | chr9:47439051-47438744 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 179 |
| Conread position: | 555-838 |
| Cow position: | chr9:9562005-9561708 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 212 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 198, 84 |
| Conread position: | 556-754 |
| Cow position: | chr9:26530069-26530266 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 146 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 170, 0 |
| Conread position: | 557-763 |
| Cow position: | chr9:3873660-3873453 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 98, 42 |
| Conread position: | 563-823 |
| Cow position: | chr9:43723130-43722855 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 115, 81 |
| Conread position: | 574-769 |
| Cow position: | chr9:10772798-10772985 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 579-756 |
| Cow position: | chr9:34315055-34315230 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 148, 44 |
| Conread position: | 579-835 |
| Cow position: | chr9:12364266-12363997 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 172, 40 |
| Conread position: | 585-852 |
| Cow position: | chr9:12861378-12861099 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 54 |
| Conread position: | 594-721 |
| Cow position: | chr9:34167390-34167266 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 604-759 |
| Cow position: | chr9:63411355-63411200 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 37, 15 |
| Conread position: | 604-768 |
| Cow position: | chr9:11315652-11315818 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 75, 148 |
| Conread position: | 617-807 |
| Cow position: | chr9:36715149-36714959 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 100, 79 |
Show alignments to all cow chromosomes.