Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8062A10.5 |
| Conread position: | 457-650 |
| Cow position: | chrX:38737510-38737319 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 25, 7 |
| Conread position: | 466-729 |
| Cow position: | chrX:13259509-13259247 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 9 |
| Conread position: | 467-838 |
| Cow position: | chrX:29774415-29774798 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 59 |
| Conread position: | 470-766 |
| Cow position: | chrX:25434805-25435107 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 221 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 67, 10 |
| Conread position: | 477-769 |
| Cow position: | chrX:25218932-25219215 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 250, 75 |
| Conread position: | 479-728 |
| Cow position: | chrX:34863532-34863296 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 480-725 |
| Cow position: | chrX:21243121-21242870 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 202 |
| Conread position: | 480-832 |
| Cow position: | chrX:11571787-11572140 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 256 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 38, 48 |
| Conread position: | 480-838 |
| Cow position: | chrX:23364503-23364129 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 239, 324 |
| Conread position: | 485-763 |
| Cow position: | chrX:24630786-24631051 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 201 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 15, 37 |
| Conread position: | 490-636 |
| Cow position: | chrX:25227338-25227483 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 28, 15 |
| Conread position: | 490-766 |
| Cow position: | chrX:31443709-31443971 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 204 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 241, 145 |
| Conread position: | 490-769 |
| Cow position: | chrX:42549553-42549821 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 490-838 |
| Cow position: | chrX:13816663-13817019 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 246 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 28, 185 |
| Conread position: | 490-838 |
| Cow position: | chrX:42915515-42915861 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 240, 38 |
| Conread position: | 491-838 |
| Cow position: | chrX:39097386-39097040 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 78 |
| Conread position: | 491-838 |
| Cow position: | chrX:42066231-42066590 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 260 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 57, 11 |
| Conread position: | 492-641 |
| Cow position: | chrX:18507660-18507512 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 115 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 50, 25 |
| Conread position: | 492-838 |
| Cow position: | chrX:44191941-44191575 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 33 |
| Conread position: | 493-635 |
| Cow position: | chrX:17483125-17482984 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 499-839 |
| Cow position: | chrX:38739742-38740092 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 219, 26 |
| Conread position: | 501-834 |
| Cow position: | chrX:1340689-1340338 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 251 |
| Conread position: | 503-725 |
| Cow position: | chrX:31466175-31465956 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 172 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 12, 24 |
| Conread position: | 503-768 |
| Cow position: | chrX:42558166-42558425 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 247, 66 |
| Conread position: | 504-748 |
| Cow position: | chrX:32568699-32568454 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 186 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 11, 23 |
| Conread position: | 504-769 |
| Cow position: | chrX:41929838-41930104 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 221 |
| Conread position: | 504-822 |
| Cow position: | chrX:25442092-25441768 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 14 |
| Conread position: | 510-763 |
| Cow position: | chrX:21177956-21177703 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 20 |
| Conread position: | 510-838 |
| Cow position: | chrX:31909118-31908775 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 52 |
| Conread position: | 513-701 |
| Cow position: | chrX:4547584-4547395 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 127, 25 |
| Conread position: | 524-724 |
| Cow position: | chrX:6815623-6815823 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 159 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 149, 33 |
| Conread position: | 527-838 |
| Cow position: | chrX:29901168-29901491 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 237 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 28, 10 |
| Conread position: | 529-746 |
| Cow position: | chrX:48389911-48390129 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 160 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 529-753 |
| Cow position: | chrX:11810359-11810134 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 169 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 164, 0 |
| Conread position: | 529-761 |
| Cow position: | chrX:42559552-42559323 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 0 |
| Conread position: | 529-769 |
| Cow position: | chrX:25237063-25236836 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 178 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 203, 144 |
| Conread position: | 529-838 |
| Cow position: | chrX:31919297-31918976 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 236, 164 |
| Conread position: | 541-756 |
| Cow position: | chrX:42050909-42051123 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 209, 177 |
| Conread position: | 544-838 |
| Cow position: | chrX:802747-803049 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 226 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 206, 118 |
| Conread position: | 549-751 |
| Cow position: | chrX:25265832-25266037 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 156 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 116, 150 |
| Conread position: | 549-774 |
| Cow position: | chrX:33782836-33783058 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 168, 106 |
| Conread position: | 552-724 |
| Cow position: | chrX:3040393-3040223 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 138 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 552-761 |
| Cow position: | chrX:11840874-11840669 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 164 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 177, 103 |
| Conread position: | 552-774 |
| Cow position: | chrX:38139230-38139008 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 555-680 |
| Cow position: | chrX:34581222-34581100 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 101 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 556-769 |
| Cow position: | chrX:26352414-26352192 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 171 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 160, 122 |
| Conread position: | 557-676 |
| Cow position: | chrX:15370173-15370054 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 98 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 557-775 |
| Cow position: | chrX:219692-219912 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 145, 75 |
| Conread position: | 571-838 |
| Cow position: | chrX:112288-112570 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 201 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 136, 35 |
| Conread position: | 572-769 |
| Cow position: | chrX:25262700-25262892 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 145, 72 |
| Conread position: | 573-780 |
| Cow position: | chrX:1151636-1151430 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 159 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 155, 58 |
| Conread position: | 579-841 |
| Cow position: | chrX:32651141-32650863 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 147, 76 |
| Conread position: | 580-768 |
| Cow position: | chrX:48264201-48264392 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 603-838 |
| Cow position: | chrX:38732972-38733199 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 75, 65 |
| Conread position: | 616-830 |
| Cow position: | chrX:14214522-14214294 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 111, 6 |
| Conread position: | 624-768 |
| Cow position: | chrX:48058146-48058001 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 625-754 |
| Cow position: | chrX:44628426-44628296 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 92, 71 |
| Conread position: | 627-838 |
| Cow position: | chrX:39427554-39427327 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 123, 193 |
| Conread position: | 638-838 |
| Cow position: | chrX:17482844-17482627 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 641-760 |
| Cow position: | chrX:6861400-6861282 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 693-838 |
| Cow position: | chrX:4547129-4546981 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 25, 0 |
Show alignments to all cow chromosomes.