Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8062A12.3 |
| Conread position: | 1-163 |
| Cow position: | chr12:24663149-24662989 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 5, 114 |
| Conread position: | 1-165 |
| Cow position: | chr12:15089549-15089385 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 104, 13 |
| Conread position: | 1-165 |
| Cow position: | chr12:37169912-37170072 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 2-163 |
| Cow position: | chr12:20776891-20777050 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 96, 33 |
| Conread position: | 2-163 |
| Cow position: | chr12:42684912-42685074 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 3-165 |
| Cow position: | chr12:19508527-19508694 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 3-172 |
| Cow position: | chr12:44733060-44733228 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 3-191 |
| Cow position: | chr12:38126492-38126681 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 103, 158 |
| Conread position: | 4-163 |
| Cow position: | chr12:45820335-45820495 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 4-165 |
| Cow position: | chr12:12637152-12637314 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 4-165 |
| Cow position: | chr12:15038945-15039105 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 104, 95 |
| Conread position: | 4-165 |
| Cow position: | chr12:20071542-20071704 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 94, 20 |
| Conread position: | 4-165 |
| Cow position: | chr12:22540238-22540076 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 103, 151 |
| Conread position: | 4-165 |
| Cow position: | chr12:28748972-28748811 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 99, 26 |
| Conread position: | 4-191 |
| Cow position: | chr12:35123920-35123737 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 181, 36 |
| Conread position: | 4-191 |
| Cow position: | chr12:40360718-40360532 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 101, 115 |
| Conread position: | 4-193 |
| Cow position: | chr12:42953869-42954056 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 48, 96 |
| Conread position: | 5-158 |
| Cow position: | chr12:27037420-27037573 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-165 |
| Cow position: | chr12:6720358-6720194 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 125 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 5-165 |
| Cow position: | chr12:17881891-17881734 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 7-143 |
| Cow position: | chr12:9143415-9143280 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 108 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 99, 79 |
| Conread position: | 7-147 |
| Cow position: | chr12:18577867-18577727 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 112 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 101, 88 |
| Conread position: | 7-147 |
| Cow position: | chr12:18582965-18583104 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 109 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 105, 29 |
| Conread position: | 7-157 |
| Cow position: | chr12:5631854-5632003 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 99, 29 |
| Conread position: | 7-160 |
| Cow position: | chr12:19261223-19261074 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 111, 123 |
| Conread position: | 7-163 |
| Cow position: | chr12:3092552-3092700 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 7-163 |
| Cow position: | chr12:7884653-7884809 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 94, 109 |
| Conread position: | 7-163 |
| Cow position: | chr12:19507665-19507504 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 7-163 |
| Cow position: | chr12:19691206-19691361 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 102, 25 |
| Conread position: | 7-163 |
| Cow position: | chr12:22285094-22285246 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 120 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 7-163 |
| Cow position: | chr12:29770551-29770700 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 106, 31 |
| Conread position: | 7-163 |
| Cow position: | chr12:30170697-30170541 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 36, 42 |
| Conread position: | 7-163 |
| Cow position: | chr12:32169568-32169414 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 91, 41 |
| Conread position: | 7-163 |
| Cow position: | chr12:44622376-44622227 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 120 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 7-164 |
| Cow position: | chr12:7000576-7000732 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 7-164 |
| Cow position: | chr12:15122354-15122194 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 51, 81 |
| Conread position: | 7-165 |
| Cow position: | chr12:5906084-5905925 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 7-165 |
| Cow position: | chr12:16670295-16670136 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 118 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 7-165 |
| Cow position: | chr12:20636124-20636285 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 7-165 |
| Cow position: | chr12:25561397-25561241 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 7-174 |
| Cow position: | chr12:11056904-11056736 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 9, 78 |
| Conread position: | 7-190 |
| Cow position: | chr12:3056160-3055976 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 107, 14 |
| Conread position: | 7-191 |
| Cow position: | chr12:18518701-18518512 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 95, 154 |
| Conread position: | 7-198 |
| Cow position: | chr12:6210130-6210320 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 115, 92 |
| Conread position: | 8-157 |
| Cow position: | chr12:9766850-9767001 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 83, 76 |
| Conread position: | 8-165 |
| Cow position: | chr12:6102801-6102956 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 127, 64 |
| Conread position: | 8-165 |
| Cow position: | chr12:7110224-7110071 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 118 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 8-165 |
| Cow position: | chr12:24032523-24032372 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 46, 39 |
| Conread position: | 8-188 |
| Cow position: | chr12:24116336-24116516 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 103, 64 |
| Conread position: | 8-205 |
| Cow position: | chr12:19258303-19258111 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 140 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 9-163 |
| Cow position: | chr12:730910-731064 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 109, 75 |
| Conread position: | 9-163 |
| Cow position: | chr12:17269828-17269672 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 86, 109 |
| Conread position: | 9-164 |
| Cow position: | chr12:28582482-28582632 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 110, 31 |
| Conread position: | 9-165 |
| Cow position: | chr12:6410708-6410861 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 13, 91 |
| Conread position: | 9-186 |
| Cow position: | chr12:30753745-30753574 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 9-207 |
| Cow position: | chr12:46120806-46121006 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 37, 92 |
| Conread position: | 10-163 |
| Cow position: | chr12:15531083-15530931 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 45, 37 |
| Conread position: | 12-165 |
| Cow position: | chr12:17031638-17031486 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 107, 44 |
| Conread position: | 13-200 |
| Cow position: | chr12:5714652-5714463 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 14-165 |
| Cow position: | chr12:18420901-18421052 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 95, 128 |
| Conread position: | 36-163 |
| Cow position: | chr12:38454908-38454783 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 63, 0 |
Show alignments to all cow chromosomes.