Cow genome map

Conread name: Ss1.1-Pig4-TMW8062A12.3

Conread position: 1-137
Cow position: chr17:18848045-18848183 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 105
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 108, 0

Conread position: 1-158
Cow position: chr17:15102781-15102933 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 120
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 98, 0

Conread position: 1-164
Cow position: chr17:25097568-25097414 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 123
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 46, 0

Conread position: 1-165
Cow position: chr17:18108974-18109135 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 127
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 108, 34

Conread position: 1-165
Cow position: chr17:25612203-25612039 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 121
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 112, 98

Conread position: 1-165
Cow position: chr17:25901313-25901147 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 127
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 106, 0

Conread position: 1-184
Cow position: chr17:24824355-24824172 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 138
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 174, 105

Conread position: 3-163
Cow position: chr17:4968223-4968066 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 117
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 111, 0

Conread position: 3-163
Cow position: chr17:20022403-20022564 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 121
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 103, 96

Conread position: 3-165
Cow position: chr17:21114843-21115000 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 128
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 102, 121

Conread position: 3-165
Cow position: chr17:40639058-40638900 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 125
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 96, 0

Conread position: 4-165
Cow position: chr17:1113998-1113841 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 118
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 95, 0

Conread position: 4-165
Cow position: chr17:21335582-21335744 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 119
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 110, 94

Conread position: 4-165
Cow position: chr17:21917763-21917923 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 124
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 63, 69

Conread position: 4-165
Cow position: chr17:24149294-24149134 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 114
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 111, 0

Conread position: 4-165
Cow position: chr17:24928585-24928427 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 116
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 95, 0

Conread position: 4-165
Cow position: chr17:27730653-27730490 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 121
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 60, 97

Conread position: 4-165
Cow position: chr17:38615070-38614909 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 122
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 114, 95

Conread position: 4-189
Cow position: chr17:1256390-1256578 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 134
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 103, 136

Conread position: 5-151
Cow position: chr17:18592551-18592404 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 109
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 96, 136

Conread position: 5-163
Cow position: chr17:35338812-35338963 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 118
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 81, 0

Conread position: 5-165
Cow position: chr17:25616358-25616209 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 122
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 29, 0

Conread position: 5-165
Cow position: chr17:28284919-28285080 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 119
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 100, 80

Conread position: 5-165
Cow position: chr17:32419007-32419163 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 118
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 94, 0

Conread position: 6-185
Cow position: chr17:12880704-12880526 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 131
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 103, 110

Conread position: 7-138
Cow position: chr17:12959213-12959082 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 104
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 106, 87

Conread position: 7-142
Cow position: chr17:29995329-29995465 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 104
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 84, 77

Conread position: 7-143
Cow position: chr17:33288550-33288687 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 104
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 105, 0

Conread position: 7-148
Cow position: chr17:32332984-32333125 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 110
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 84, 77

Conread position: 7-157
Cow position: chr17:32989583-32989434 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 115
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 74, 0

Conread position: 7-157
Cow position: chr17:32993517-32993666 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 115
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 74, 0

Conread position: 7-158
Cow position: chr17:25800774-25800925 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 122
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 43, 105

Conread position: 7-161
Cow position: chr17:36330851-36331004 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 119
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 100, 20

Conread position: 7-162
Cow position: chr17:5422962-5423117 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 120
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 101, 135

Conread position: 7-163
Cow position: chr17:908847-908695 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 124
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 74, 0

Conread position: 7-163
Cow position: chr17:1410131-1410287 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 115
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 94, 109

Conread position: 7-163
Cow position: chr17:1634385-1634537 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 119
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 97, 112

Conread position: 7-163
Cow position: chr17:3577646-3577494 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 121
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 84, 77

Conread position: 7-163
Cow position: chr17:5372420-5372577 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 121
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 106, 78

Conread position: 7-163
Cow position: chr17:9824776-9824621 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 123
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 81, 92

Conread position: 7-163
Cow position: chr17:12591281-12591119 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 131
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 45, 97

Conread position: 7-163
Cow position: chr17:20990083-20990242 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 127
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 37, 63

Conread position: 7-163
Cow position: chr17:21003722-21003876 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 120
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 112, 28

Conread position: 7-163
Cow position: chr17:24587731-24587574 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 120
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 111, 0

Conread position: 7-163
Cow position: chr17:32138317-32138467 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 126
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 92, 0

Conread position: 7-163
Cow position: chr17:32273580-32273734 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 120
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 70, 90

Conread position: 7-163
Cow position: chr17:34790957-34791114 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 116
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 40, 0

Conread position: 7-164
Cow position: chr17:39715267-39715109 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 113
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 98, 0

Conread position: 7-165
Cow position: chr17:1040852-1040696 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 118
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 102, 0

Conread position: 7-165
Cow position: chr17:4225393-4225543 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 124
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 29, 0

Conread position: 7-165
Cow position: chr17:6423871-6423711 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 119
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 105, 0

Conread position: 7-165
Cow position: chr17:11368743-11368901 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 123
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 84, 7

Conread position: 7-165
Cow position: chr17:18490647-18490488 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 114
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 97, 0

Conread position: 7-165
Cow position: chr17:20992935-20993089 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 120
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 112, 41

Conread position: 7-165
Cow position: chr17:21959581-21959736 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 114
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 91, 0

Conread position: 7-165
Cow position: chr17:25342634-25342789 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 119
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 92, 0

Conread position: 7-165
Cow position: chr17:31856780-31856621 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 113
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 96, 0

Conread position: 7-165
Cow position: chr17:39606537-39606380 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 122
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 101, 124

Conread position: 7-166
Cow position: chr17:12108911-12108755 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 120
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 49, 43

Conread position: 7-172
Cow position: chr17:21039664-21039508 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 129
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 102, 78

Conread position: 7-174
Cow position: chr17:11664476-11664648 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 135
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 17, 80

Conread position: 7-174
Cow position: chr17:25126457-25126292 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 124
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 155, 92

Conread position: 7-179
Cow position: chr17:27202939-27203108 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 130
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 160, 92

Conread position: 7-191
Cow position: chr17:18495413-18495595 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 134
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 111, 28

Conread position: 7-191
Cow position: chr17:23516835-23517017 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 135
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 98, 0

Conread position: 7-191
Cow position: chr17:38263383-38263568 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 132
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 97, 154

Conread position: 7-197
Cow position: chr17:21738767-21738963 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 139
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 99, 89

Conread position: 7-218
Cow position: chr17:33657961-33658170 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 145
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 97, 77

Conread position: 8-162
Cow position: chr17:32471675-32471831 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 118
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 96, 0

Conread position: 8-163
Cow position: chr17:12536359-12536516 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 124
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 106, 91

Conread position: 8-163
Cow position: chr17:25541711-25541867 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 116
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 91, 149

Conread position: 8-164
Cow position: chr17:10458826-10458986 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 118
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 52, 0

Conread position: 8-165
Cow position: chr17:21325438-21325283 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 117
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 107, 0

Conread position: 8-165
Cow position: chr17:27183837-27183991 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 114
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 41, 0

Conread position: 9-158
Cow position: chr17:15664782-15664628 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 114
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 95, 0

Conread position: 9-163
Cow position: chr17:21478817-21478970 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 121
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 104, 26

Conread position: 9-163
Cow position: chr17:31037272-31037428 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 117
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 91, 109

Conread position: 9-164
Cow position: chr17:21758036-21758187 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 117
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 90, 0

Conread position: 9-165
Cow position: chr17:1035492-1035647 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 114
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 106, 0

Conread position: 9-165
Cow position: chr17:6329220-6329064 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 116
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 95, 107

Conread position: 9-169
Cow position: chr17:923984-923824 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 115
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 103, 115

Conread position: 9-172
Cow position: chr17:22051485-22051648 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 124
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 77, 99

Conread position: 9-191
Cow position: chr17:38647166-38646985 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 133
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 99, 141

Conread position: 9-193
Cow position: chr17:26233725-26233906 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 135
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 158, 87

Conread position: 10-163
Cow position: chr17:33933641-33933796 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 122
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 94, 108

Conread position: 13-163
Cow position: chr17:22016983-22017135 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 124
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 93, 86

Conread position: 16-157
Cow position: chr17:24786922-24787065 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 111
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 35, 102

Show alignments to all cow chromosomes.