Cow genome map

Conread name: Ss1.1-Pig4-TMW8062A12.3

Conread position: 1-163
Cow position: chr18:33896379-33896551 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 134
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 44, 0

Conread position: 1-165
Cow position: chr18:9365960-9365793 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 121
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 52, 118

Conread position: 1-165
Cow position: chr18:11691370-11691531 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 130
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 104, 22

Conread position: 1-165
Cow position: chr18:20126344-20126182 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 126
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 97, 25

Conread position: 1-165
Cow position: chr18:29058463-29058617 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 122
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 27, 0

Conread position: 1-165
Cow position: chr18:42432050-42432217 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 123
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 43, 0

Conread position: 2-163
Cow position: chr18:55505442-55505286 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 122
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 17, 0

Conread position: 2-165
Cow position: chr18:39875221-39875382 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 124
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 106, 79

Conread position: 3-164
Cow position: chr18:1954552-1954712 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 123
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 152, 137

Conread position: 3-165
Cow position: chr18:43950863-43950700 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 117
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 90, 0

Conread position: 4-163
Cow position: chr18:55461670-55461829 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 113
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 4-165
Cow position: chr18:19688060-19687897 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 121
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 104, 0

Conread position: 4-165
Cow position: chr18:23623597-23623756 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 117
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 106, 0

Conread position: 4-190
Cow position: chr18:36746223-36746406 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 136
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 156, 95

Conread position: 4-193
Cow position: chr18:17649702-17649894 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 134
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 69, 88

Conread position: 4-193
Cow position: chr18:52703810-52704006 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 142
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 103, 0

Conread position: 5-137
Cow position: chr18:32189472-32189607 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 104
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 94, 0

Conread position: 5-157
Cow position: chr18:10576146-10575987 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 120
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 48, 0

Conread position: 5-159
Cow position: chr18:42479551-42479705 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 118
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 5-163
Cow position: chr18:6310116-6309960 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 119
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 86, 27

Conread position: 5-163
Cow position: chr18:33008101-33007939 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 122
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 26, 16

Conread position: 5-165
Cow position: chr18:45104406-45104568 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 116
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 105, 0

Conread position: 6-220
Cow position: chr18:45571047-45570830 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 160
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 157, 21

Conread position: 7-117
Cow position: chr18:31082315-31082422 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 91
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 92, 0

Conread position: 7-144
Cow position: chr18:53038863-53038724 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 105
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 98, 0

Conread position: 7-146
Cow position: chr18:49015158-49015023 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 110
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 91, 25

Conread position: 7-155
Cow position: chr18:35367163-35367300 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 115
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 33, 0

Conread position: 7-156
Cow position: chr18:51594771-51594917 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 114
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 91, 0

Conread position: 7-157
Cow position: chr18:30248106-30248252 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 113
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 59, 28

Conread position: 7-157
Cow position: chr18:49038495-49038344 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 121
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 96, 0

Conread position: 7-158
Cow position: chr18:7076988-7076840 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 111
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 74, 0

Conread position: 7-158
Cow position: chr18:10977178-10977329 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 113
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 87, 33

Conread position: 7-158
Cow position: chr18:11685015-11684864 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 118
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 7-162
Cow position: chr18:49841311-49841158 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 124
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 100, 28

Conread position: 7-163
Cow position: chr18:1571204-1571358 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 115
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 100, 46

Conread position: 7-163
Cow position: chr18:5487275-5487127 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 120
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 84, 28

Conread position: 7-163
Cow position: chr18:5578340-5578185 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 117
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 84, 39

Conread position: 7-163
Cow position: chr18:8171052-8171207 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 118
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 84, 76

Conread position: 7-163
Cow position: chr18:13507707-13507860 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 116
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 112, 9

Conread position: 7-163
Cow position: chr18:28923814-28923957 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 120
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 92, 0

Conread position: 7-163
Cow position: chr18:31711528-31711687 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 122
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 19, 150

Conread position: 7-163
Cow position: chr18:33299937-33299780 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 120
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 98, 78

Conread position: 7-163
Cow position: chr18:37002665-37002512 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 113
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 92, 0

Conread position: 7-163
Cow position: chr18:44483740-44483893 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 115
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 92, 0

Conread position: 7-163
Cow position: chr18:52855088-52854929 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 115
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 92, 0

Conread position: 7-163
Cow position: chr18:55119908-55119748 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 117
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 23, 0

Conread position: 7-164
Cow position: chr18:18592506-18592353 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 122
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 92, 0

Conread position: 7-164
Cow position: chr18:20641463-20641611 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 119
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 92, 0

Conread position: 7-165
Cow position: chr18:4495853-4496009 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 113
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 92, 0

Conread position: 7-165
Cow position: chr18:19193332-19193489 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 113
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 108, 0

Conread position: 7-165
Cow position: chr18:22055841-22056003 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 122
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 99, 92

Conread position: 7-165
Cow position: chr18:25647219-25647375 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 124
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 97, 9

Conread position: 7-165
Cow position: chr18:28101666-28101508 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 115
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 113, 52

Conread position: 7-165
Cow position: chr18:37023517-37023676 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 113
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 96, 0

Conread position: 7-165
Cow position: chr18:48713584-48713426 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 124
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 47, 41

Conread position: 7-165
Cow position: chr18:50974261-50974417 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 115
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 92, 0

Conread position: 7-165
Cow position: chr18:54130298-54130457 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 119
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 103, 92

Conread position: 7-168
Cow position: chr18:25206155-25206315 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 117
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 105, 65

Conread position: 7-168
Cow position: chr18:44262663-44262500 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 125
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 104, 32

Conread position: 7-175
Cow position: chr18:2849236-2849403 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 122
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 111, 154

Conread position: 7-180
Cow position: chr18:50959521-50959347 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 125
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 32, 110

Conread position: 7-182
Cow position: chr18:19883566-19883391 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 125
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 25, 156

Conread position: 7-184
Cow position: chr18:40759240-40759064 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 130
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 92, 0

Conread position: 7-184
Cow position: chr18:56166014-56165839 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 131
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 146, 41

Conread position: 7-186
Cow position: chr18:20174096-20174278 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 132
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 160, 88

Conread position: 7-189
Cow position: chr18:4182154-4182338 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 129
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 96, 131

Conread position: 7-191
Cow position: chr18:6609824-6610006 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 132
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 19, 78

Conread position: 7-191
Cow position: chr18:32883337-32883158 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 131
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 27, 0

Conread position: 7-194
Cow position: chr18:39662812-39662628 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 132
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 92, 0

Conread position: 7-195
Cow position: chr18:43555491-43555679 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 129
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 160, 110

Conread position: 7-207
Cow position: chr18:18369328-18369526 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 143
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 102, 40

Conread position: 8-154
Cow position: chr18:43796923-43797066 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 119
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 87, 0

Conread position: 8-163
Cow position: chr18:47512038-47511884 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 124
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 126, 0

Conread position: 8-165
Cow position: chr18:29356592-29356750 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 120
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 101, 0

Conread position: 8-169
Cow position: chr18:2146547-2146713 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 127
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 90, 139

Conread position: 8-179
Cow position: chr18:34219891-34220061 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 127
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 153, 91

Conread position: 9-163
Cow position: chr18:16686304-16686458 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 118
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 98, 90

Conread position: 9-163
Cow position: chr18:29958133-29958278 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 121
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 90, 0

Conread position: 9-165
Cow position: chr18:38687111-38686967 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 122
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 31, 0

Conread position: 9-170
Cow position: chr18:44801858-44802019 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 117
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 150, 101

Conread position: 9-191
Cow position: chr18:28657880-28658057 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 132
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 107, 0

Conread position: 11-166
Cow position: chr18:19896422-19896579 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 114
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 89, 0

Conread position: 14-169
Cow position: chr18:43065556-43065400 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 114
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 83, 114

Conread position: 16-164
Cow position: chr18:8300043-8299893 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 114
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 79, 0

Conread position: 17-165
Cow position: chr18:33407640-33407492 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 111
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 92, 99

Conread position: 25-164
Cow position: chr18:29991495-29991636 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 108
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 80, 0

Conread position: 25-180
Cow position: chr18:52402952-52403109 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 121
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 92, 144

Show alignments to all cow chromosomes.