Cow genome map

Conread name: Ss1.1-Pig4-TMW8062A12.3

Conread position: 1-107
Cow position: chr19:23756681-23756787 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 86
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 1-138
Cow position: chr19:42768036-42768174 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 107
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 57, 105

Conread position: 1-163
Cow position: chr19:24759823-24759984 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 126
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 23, 33

Conread position: 1-165
Cow position: chr19:13757313-13757147 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 128
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 23, 120

Conread position: 1-165
Cow position: chr19:26754097-26753937 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 119
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 105, 0

Conread position: 1-169
Cow position: chr19:34955637-34955798 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 125
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 84, 0

Conread position: 2-162
Cow position: chr19:16105020-16105181 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 122
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 105, 0

Conread position: 2-164
Cow position: chr19:32754587-32754424 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 115
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 106, 0

Conread position: 3-154
Cow position: chr19:33575582-33575432 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 117
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 50, 43

Conread position: 3-162
Cow position: chr19:23394844-23394686 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 116
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 109, 63

Conread position: 3-163
Cow position: chr19:10545645-10545806 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 119
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 79, 56

Conread position: 3-164
Cow position: chr19:27612110-27612271 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 124
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 23, 83

Conread position: 3-165
Cow position: chr19:6278244-6278081 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 121
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 101, 116

Conread position: 3-165
Cow position: chr19:8375243-8375407 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 118
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 94, 115

Conread position: 3-165
Cow position: chr19:16567212-16567053 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 120
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 106, 80

Conread position: 3-183
Cow position: chr19:41024283-41024107 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 130
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 144, 0

Conread position: 3-186
Cow position: chr19:20666011-20666197 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 136
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 102, 113

Conread position: 3-191
Cow position: chr19:13129929-13129746 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 140
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 96, 14

Conread position: 4-158
Cow position: chr19:32453005-32453161 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 119
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 55, 70

Conread position: 4-159
Cow position: chr19:6867301-6867457 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 112
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 104, 0

Conread position: 4-164
Cow position: chr19:4445563-4445723 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 117
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 109, 95

Conread position: 4-165
Cow position: chr19:5912902-5913058 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 119
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 46, 0

Conread position: 4-165
Cow position: chr19:9408745-9408584 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 117
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 4-165
Cow position: chr19:11110674-11110834 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 116
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 32, 0

Conread position: 4-165
Cow position: chr19:18750017-18750175 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 116
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 98, 0

Conread position: 4-165
Cow position: chr19:25143154-25142993 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 118
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 103, 115

Conread position: 4-165
Cow position: chr19:33912566-33912728 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 123
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 97, 113

Conread position: 4-180
Cow position: chr19:43901-43731 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 127
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 96, 63

Conread position: 4-181
Cow position: chr19:35846959-35846781 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 126
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 20, 176

Conread position: 4-186
Cow position: chr19:6601652-6601834 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 131
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 172, 155

Conread position: 4-187
Cow position: chr19:33747908-33747723 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 132
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 104, 170

Conread position: 4-191
Cow position: chr19:1650567-1650376 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 135
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 163, 111

Conread position: 4-191
Cow position: chr19:22039832-22039643 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 131
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 98, 158

Conread position: 4-193
Cow position: chr19:23403586-23403772 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 135
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 166, 111

Conread position: 5-162
Cow position: chr19:20984716-20984872 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 117
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 110, 0

Conread position: 5-163
Cow position: chr19:35742219-35742061 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 121
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 86, 79

Conread position: 5-163
Cow position: chr19:51230767-51230924 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 114
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 80, 0

Conread position: 5-165
Cow position: chr19:2734507-2734349 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 116
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 94, 0

Conread position: 5-165
Cow position: chr19:48960455-48960294 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 123
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 94, 0

Conread position: 5-186
Cow position: chr19:24137319-24137134 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 136
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 74, 9

Conread position: 5-189
Cow position: chr19:31595358-31595169 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 134
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 163, 0

Conread position: 5-191
Cow position: chr19:47671801-47671623 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 139
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 160, 80

Conread position: 7-146
Cow position: chr19:11646622-11646489 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 109
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 77, 0

Conread position: 7-148
Cow position: chr19:34420464-34420328 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 111
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 104, 56

Conread position: 7-149
Cow position: chr19:46454902-46454760 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 108
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 105, 92

Conread position: 7-154
Cow position: chr19:23889432-23889572 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 114
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 78, 0

Conread position: 7-158
Cow position: chr19:47453487-47453335 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 116
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 102, 78

Conread position: 7-162
Cow position: chr19:16621302-16621451 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 116
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 114, 48

Conread position: 7-163
Cow position: chr19:3621485-3621331 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 119
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 112, 92

Conread position: 7-163
Cow position: chr19:8033803-8033646 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 114
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 111, 92

Conread position: 7-163
Cow position: chr19:14593111-14592954 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 117
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 98, 110

Conread position: 7-163
Cow position: chr19:14631984-14632135 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 116
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 66, 0

Conread position: 7-163
Cow position: chr19:18786267-18786423 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 121
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 104, 42

Conread position: 7-163
Cow position: chr19:19919406-19919561 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 117
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 92, 0

Conread position: 7-163
Cow position: chr19:21199194-21199037 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 129
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 99, 92

Conread position: 7-163
Cow position: chr19:22765677-22765521 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 122
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 102, 29

Conread position: 7-163
Cow position: chr19:33981011-33980861 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 121
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 28, 0

Conread position: 7-163
Cow position: chr19:34288077-34287920 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 119
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 94, 0

Conread position: 7-163
Cow position: chr19:34619974-34620130 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 118
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 106, 7

Conread position: 7-163
Cow position: chr19:39576513-39576670 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 118
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 112, 0

Conread position: 7-163
Cow position: chr19:41585024-41584875 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 119
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 79, 0

Conread position: 7-163
Cow position: chr19:42517200-42517357 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 115
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 105, 0

Conread position: 7-164
Cow position: chr19:15067952-15068103 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 123
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 41, 52

Conread position: 7-165
Cow position: chr19:6849140-6849292 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 116
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 92, 0

Conread position: 7-165
Cow position: chr19:12747721-12747877 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 113
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 40, 0

Conread position: 7-165
Cow position: chr19:15719563-15719720 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 124
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 112, 70

Conread position: 7-165
Cow position: chr19:21378414-21378571 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 124
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 96, 77

Conread position: 7-165
Cow position: chr19:22043297-22043453 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 120
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 92, 0

Conread position: 7-165
Cow position: chr19:24005709-24005565 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 121
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 66, 0

Conread position: 7-165
Cow position: chr19:24145073-24144919 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 121
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 86, 0

Conread position: 7-165
Cow position: chr19:38500219-38500062 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 119
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 98, 28

Conread position: 7-165
Cow position: chr19:39057299-39057142 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 122
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 27, 118

Conread position: 7-165
Cow position: chr19:47859260-47859416 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 116
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 89, 0

Conread position: 7-165
Cow position: chr19:47986914-47986754 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 115
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 99, 0

Conread position: 7-195
Cow position: chr19:11212343-11212531 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 141
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 106, 148

Conread position: 7-198
Cow position: chr19:46094581-46094775 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 133
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 103, 0

Conread position: 7-223
Cow position: chr19:25526339-25526119 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 149
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 92, 217

Conread position: 8-162
Cow position: chr19:25954684-25954837 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 118
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 107, 0

Conread position: 9-150
Cow position: chr19:12052797-12052934 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 114
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 99, 12

Conread position: 9-150
Cow position: chr19:12067794-12067657 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 114
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 99, 12

Conread position: 9-163
Cow position: chr19:34001260-34001109 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 118
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 103, 90

Conread position: 9-163
Cow position: chr19:35107582-35107428 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 117
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 101, 63

Conread position: 9-165
Cow position: chr19:35762196-35762354 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 121
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 31, 125

Conread position: 9-186
Cow position: chr19:7404323-7404506 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 133
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 91, 110

Conread position: 9-186
Cow position: chr19:47110094-47109911 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 134
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 92, 76

Conread position: 9-191
Cow position: chr19:20670853-20671023 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 135
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 158, 97

Conread position: 9-192
Cow position: chr19:10213725-10213542 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 130
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 103, 154

Conread position: 10-165
Cow position: chr19:41946235-41946084 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 119
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 86, 0

Conread position: 11-164
Cow position: chr19:28924808-28924658 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 112
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 88, 0

Conread position: 12-182
Cow position: chr19:35756686-35756516 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 127
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 100, 87

Conread position: 14-193
Cow position: chr19:28014527-28014349 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 130
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 94, 58

Conread position: 18-163
Cow position: chr19:37646792-37646937 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 111
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 90, 33

Conread position: 18-165
Cow position: chr19:7668743-7668597 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 114
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 91, 14

Conread position: 21-163
Cow position: chr19:19549504-19549648 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 111
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 82, 0

Conread position: 36-191
Cow position: chr19:23786220-23786066 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 118
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 68, 80

Conread position: 43-165
Cow position: chr19:20693519-20693395 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 97
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 63, 0

Show alignments to all cow chromosomes.