Cow genome map

Conread name: Ss1.1-Pig4-TMW8062A12.3

Conread position: 1-163
Cow position: chr21:641723-641561 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 125
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 1-172
Cow position: chr21:8426582-8426413 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 128
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 84, 0

Conread position: 1-206
Cow position: chr21:45920922-45921127 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 141
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 106, 98

Conread position: 2-186
Cow position: chr21:24858450-24858262 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 135
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 99, 115

Conread position: 3-165
Cow position: chr21:46144093-46143931 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 120
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 51, 44

Conread position: 3-191
Cow position: chr21:11644832-11645022 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 144
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 88, 78

Conread position: 3-191
Cow position: chr21:22856352-22856165 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 135
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 105, 52

Conread position: 4-163
Cow position: chr21:36297626-36297465 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 121
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 101, 0

Conread position: 4-164
Cow position: chr21:37384616-37384459 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 116
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 96, 0

Conread position: 4-165
Cow position: chr21:13048060-13048222 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 118
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 98, 0

Conread position: 4-165
Cow position: chr21:13488660-13488495 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 122
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 68, 0

Conread position: 4-165
Cow position: chr21:13840459-13840298 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 119
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 101, 13

Conread position: 4-165
Cow position: chr21:17890435-17890276 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 117
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 95, 0

Conread position: 4-165
Cow position: chr21:19059960-19060114 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 124
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 36, 0

Conread position: 4-165
Cow position: chr21:30606953-30607116 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 121
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 18, 0

Conread position: 4-191
Cow position: chr21:10007506-10007691 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 136
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 60, 70

Conread position: 4-191
Cow position: chr21:18155433-18155623 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 138
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 100, 112

Conread position: 4-200
Cow position: chr21:6017758-6017553 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 143
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 101, 0

Conread position: 4-200
Cow position: chr21:17009114-17008918 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 136
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 163, 185

Conread position: 5-158
Cow position: chr21:42540090-42540242 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 116
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 100, 91

Conread position: 5-163
Cow position: chr21:30222477-30222319 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 118
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 114, 155

Conread position: 6-174
Cow position: chr21:46551972-46552142 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 122
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 106, 0

Conread position: 7-128
Cow position: chr21:19360046-19360167 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 94
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 7-135
Cow position: chr21:12104496-12104367 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 107
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 34, 93

Conread position: 7-141
Cow position: chr21:19240743-19240880 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 105
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 100, 0

Conread position: 7-145
Cow position: chr21:20183201-20183064 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 106
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 108, 0

Conread position: 7-147
Cow position: chr21:30980448-30980587 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 107
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 29, 0

Conread position: 7-148
Cow position: chr21:29214030-29214169 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 110
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 103, 0

Conread position: 7-157
Cow position: chr21:297884-297733 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 113
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 106, 0

Conread position: 7-158
Cow position: chr21:7673250-7673100 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 114
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 94, 26

Conread position: 7-158
Cow position: chr21:27569043-27569189 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 115
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 107, 33

Conread position: 7-158
Cow position: chr21:30250074-30250216 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 114
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 28, 0

Conread position: 7-159
Cow position: chr21:10601245-10601401 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 116
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 97, 143

Conread position: 7-161
Cow position: chr21:71717-71561 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 114
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 103, 0

Conread position: 7-162
Cow position: chr21:45835271-45835426 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 115
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 42, 95

Conread position: 7-163
Cow position: chr21:13365472-13365313 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 120
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 92, 40

Conread position: 7-163
Cow position: chr21:20260189-20260346 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 116
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 91, 110

Conread position: 7-163
Cow position: chr21:22014320-22014162 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 115
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 97, 124

Conread position: 7-163
Cow position: chr21:27229664-27229819 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 119
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 106, 27

Conread position: 7-163
Cow position: chr21:28030418-28030263 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 118
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 106, 31

Conread position: 7-163
Cow position: chr21:29069196-29069354 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 124
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 32, 0

Conread position: 7-163
Cow position: chr21:33982680-33982831 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 118
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 105, 28

Conread position: 7-163
Cow position: chr21:34654203-34654051 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 118
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 56, 0

Conread position: 7-163
Cow position: chr21:44214256-44214099 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 122
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 101, 31

Conread position: 7-163
Cow position: chr21:45262680-45262836 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 124
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 100, 135

Conread position: 7-163
Cow position: chr21:47464989-47465146 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 114
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 97, 7

Conread position: 7-164
Cow position: chr21:30835493-30835337 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 119
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 94, 40

Conread position: 7-165
Cow position: chr21:643454-643300 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 122
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 112, 78

Conread position: 7-165
Cow position: chr21:868794-868952 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 117
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 98, 121

Conread position: 7-165
Cow position: chr21:957802-957645 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 114
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 43, 0

Conread position: 7-165
Cow position: chr21:4280544-4280699 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 119
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 97, 29

Conread position: 7-165
Cow position: chr21:6834179-6834023 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 115
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 92, 0

Conread position: 7-165
Cow position: chr21:8549811-8549653 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 114
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 96, 43

Conread position: 7-165
Cow position: chr21:10004756-10004914 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 116
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 100, 24

Conread position: 7-165
Cow position: chr21:12461837-12461997 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 121
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 97, 112

Conread position: 7-165
Cow position: chr21:16187677-16187835 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 122
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 106, 78

Conread position: 7-165
Cow position: chr21:19196034-19196189 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 115
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 99, 0

Conread position: 7-165
Cow position: chr21:20418552-20418711 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 117
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 98, 0

Conread position: 7-165
Cow position: chr21:25628780-25628937 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 113
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 92, 0

Conread position: 7-165
Cow position: chr21:26245044-26244893 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 120
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 92, 0

Conread position: 7-165
Cow position: chr21:32559235-32559386 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 121
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 79, 0

Conread position: 7-165
Cow position: chr21:34151715-34151557 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 117
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 92, 33

Conread position: 7-165
Cow position: chr21:36795733-36795573 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 117
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 105, 0

Conread position: 7-165
Cow position: chr21:38121231-38121074 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 119
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 102, 140

Conread position: 7-165
Cow position: chr21:41621255-41621097 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 115
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 112, 92

Conread position: 7-165
Cow position: chr21:42135486-42135647 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 126
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 82, 97

Conread position: 7-165
Cow position: chr21:46264300-46264145 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 115
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 58, 0

Conread position: 7-168
Cow position: chr21:29485108-29484950 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 128
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 106, 26

Conread position: 7-169
Cow position: chr21:9416381-9416216 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 118
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 24, 0

Conread position: 7-169
Cow position: chr21:42413967-42414132 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 120
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 49, 0

Conread position: 7-188
Cow position: chr21:42841467-42841651 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 130
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 97, 0

Conread position: 7-189
Cow position: chr21:15584289-15584474 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 130
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 160, 0

Conread position: 7-189
Cow position: chr21:32339610-32339793 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 139
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 160, 87

Conread position: 7-191
Cow position: chr21:724755-724938 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 143
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 106, 33

Conread position: 7-191
Cow position: chr21:5392405-5392592 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 135
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 43, 164

Conread position: 7-191
Cow position: chr21:42384638-42384458 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 131
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 92, 0

Conread position: 7-198
Cow position: chr21:10561453-10561645 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 133
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 105, 88

Conread position: 7-198
Cow position: chr21:14452364-14452175 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 132
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 171, 108

Conread position: 8-168
Cow position: chr21:37299591-37299431 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 124
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 97, 135

Conread position: 8-169
Cow position: chr21:24642649-24642488 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 117
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 159, 27

Conread position: 9-163
Cow position: chr21:44515392-44515238 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 120
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 103, 90

Conread position: 9-164
Cow position: chr21:9940060-9940216 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 114
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 92, 0

Conread position: 9-165
Cow position: chr21:20193022-20192870 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 115
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 26, 0

Conread position: 9-186
Cow position: chr21:29978632-29978809 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 124
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 158, 108

Conread position: 9-191
Cow position: chr21:19363331-19363515 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 131
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 103, 0

Conread position: 9-194
Cow position: chr21:15911528-15911344 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 132
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 101, 30

Conread position: 10-158
Cow position: chr21:12801620-12801772 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 114
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 36, 0

Conread position: 11-169
Cow position: chr21:17856670-17856510 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 122
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 94, 85

Conread position: 12-163
Cow position: chr21:22861127-22860974 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 123
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 79, 72

Conread position: 15-163
Cow position: chr21:11739997-11740146 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 110
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 104, 0

Conread position: 21-158
Cow position: chr21:37480070-37479933 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 104
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 98, 6

Conread position: 21-165
Cow position: chr21:23192393-23192541 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 116
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 22, 99

Conread position: 43-163
Cow position: chr21:18041753-18041873 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 93
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.