Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8062A12.3 |
| Conread position: | 1-163 |
| Cow position: | chr24:5141990-5141831 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 125 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 1-165 |
| Cow position: | chr24:24457202-24457360 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-165 |
| Cow position: | chr24:39523401-39523562 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 90, 83 |
| Conread position: | 2-147 |
| Cow position: | chr24:24490970-24491115 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 111, 97 |
| Conread position: | 3-165 |
| Cow position: | chr24:28062994-28062837 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 34, 51 |
| Conread position: | 4-165 |
| Cow position: | chr24:15707400-15707555 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 4-165 |
| Cow position: | chr24:36008531-36008371 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 4-181 |
| Cow position: | chr24:42344952-42345132 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 103, 166 |
| Conread position: | 4-187 |
| Cow position: | chr24:27340974-27341162 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 23, 95 |
| Conread position: | 5-154 |
| Cow position: | chr24:30308509-30308661 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 119 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 5-157 |
| Cow position: | chr24:29063615-29063761 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 121 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 5-163 |
| Cow position: | chr24:30313982-30314142 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 104, 122 |
| Conread position: | 5-165 |
| Cow position: | chr24:31812233-31812073 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 107, 94 |
| Conread position: | 6-165 |
| Cow position: | chr24:3430776-3430618 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 6-165 |
| Cow position: | chr24:29595766-29595925 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 123, 93 |
| Conread position: | 7-148 |
| Cow position: | chr24:31816620-31816478 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 105, 92 |
| Conread position: | 7-149 |
| Cow position: | chr24:28043017-28042873 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 7-157 |
| Cow position: | chr24:1269825-1269685 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 7-158 |
| Cow position: | chr24:15246601-15246752 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 88, 103 |
| Conread position: | 7-162 |
| Cow position: | chr24:31036390-31036237 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 68, 23 |
| Conread position: | 7-163 |
| Cow position: | chr24:212029-211872 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 104, 87 |
| Conread position: | 7-163 |
| Cow position: | chr24:23186877-23187034 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 98, 110 |
| Conread position: | 7-163 |
| Cow position: | chr24:31324327-31324169 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 118 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 7-163 |
| Cow position: | chr24:33221898-33222055 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 121 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 98, 106 |
| Conread position: | 7-163 |
| Cow position: | chr24:36404100-36404257 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 117 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 7-163 |
| Cow position: | chr24:37037944-37037784 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 123 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 7-163 |
| Cow position: | chr24:37650716-37650557 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 106, 88 |
| Conread position: | 7-164 |
| Cow position: | chr24:24662089-24662244 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 7-165 |
| Cow position: | chr24:5754878-5754723 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 114, 92 |
| Conread position: | 7-165 |
| Cow position: | chr24:19000089-18999935 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 7-165 |
| Cow position: | chr24:20874723-20874565 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 92, 8 |
| Conread position: | 7-165 |
| Cow position: | chr24:24061766-24061925 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 91, 17 |
| Conread position: | 7-165 |
| Cow position: | chr24:28990603-28990449 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 111, 80 |
| Conread position: | 7-165 |
| Cow position: | chr24:32054703-32054545 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-165 |
| Cow position: | chr24:34008531-34008691 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 99, 92 |
| Conread position: | 7-165 |
| Cow position: | chr24:37974939-37975096 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 96, 78 |
| Conread position: | 7-168 |
| Cow position: | chr24:27713363-27713525 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 7-186 |
| Cow position: | chr24:19736292-19736470 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 85, 109 |
| Conread position: | 7-194 |
| Cow position: | chr24:6131830-6132016 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 92, 32 |
| Conread position: | 8-164 |
| Cow position: | chr24:18357011-18357168 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 83, 76 |
| Conread position: | 8-165 |
| Cow position: | chr24:25885118-25885276 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 97, 19 |
| Conread position: | 9-146 |
| Cow position: | chr24:37823567-37823432 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 109 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 9-163 |
| Cow position: | chr24:27725972-27726128 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 103, 90 |
| Conread position: | 9-163 |
| Cow position: | chr24:30897496-30897651 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 96, 108 |
| Conread position: | 9-163 |
| Cow position: | chr24:39791581-39791426 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 9-165 |
| Cow position: | chr24:2402328-2402483 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 9-165 |
| Cow position: | chr24:7914046-7913889 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 9-166 |
| Cow position: | chr24:15373445-15373293 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 9-191 |
| Cow position: | chr24:19769529-19769346 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 146, 171 |
| Conread position: | 11-163 |
| Cow position: | chr24:28496544-28496696 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 94, 119 |
| Conread position: | 11-165 |
| Cow position: | chr24:35675577-35675430 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 16-165 |
| Cow position: | chr24:39833482-39833627 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 16-191 |
| Cow position: | chr24:27608065-27608238 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 97, 135 |
| Conread position: | 173-825 |
| Cow position: | chr24:17383365-17383995 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 536 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
Show alignments to all cow chromosomes.