Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8062A12.3 |
| Conread position: | 1-161 |
| Cow position: | chr27:16625784-16625941 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 106, 43 |
| Conread position: | 1-163 |
| Cow position: | chr27:26407275-26407120 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 1-165 |
| Cow position: | chr27:23108016-23107854 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 112, 52 |
| Conread position: | 1-193 |
| Cow position: | chr27:6159864-6160060 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 138 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 68, 95 |
| Conread position: | 3-165 |
| Cow position: | chr27:815248-815413 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 51, 85 |
| Conread position: | 3-165 |
| Cow position: | chr27:16088690-16088856 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 45, 99 |
| Conread position: | 4-164 |
| Cow position: | chr27:26226403-26226244 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 103, 77 |
| Conread position: | 4-165 |
| Cow position: | chr27:1353470-1353634 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 4-165 |
| Cow position: | chr27:6499948-6500105 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 4-165 |
| Cow position: | chr27:26413367-26413206 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-165 |
| Cow position: | chr27:26428245-26428086 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 4-207 |
| Cow position: | chr27:29504762-29504558 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 105, 95 |
| Conread position: | 5-147 |
| Cow position: | chr27:20092946-20092800 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 108 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 5-163 |
| Cow position: | chr27:8353367-8353519 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 116, 28 |
| Conread position: | 5-165 |
| Cow position: | chr27:19685825-19685664 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 5-165 |
| Cow position: | chr27:22225704-22225548 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 5-186 |
| Cow position: | chr27:30868852-30868671 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 162, 110 |
| Conread position: | 5-195 |
| Cow position: | chr27:19508901-19509094 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 113, 80 |
| Conread position: | 6-191 |
| Cow position: | chr27:30890180-30890359 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 7-128 |
| Cow position: | chr27:28478470-28478592 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 94 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 7-151 |
| Cow position: | chr27:23560141-23559997 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 106, 92 |
| Conread position: | 7-158 |
| Cow position: | chr27:15409146-15408994 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 7-163 |
| Cow position: | chr27:4944624-4944473 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 117 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 45, 40 |
| Conread position: | 7-163 |
| Cow position: | chr27:17397564-17397406 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 7-163 |
| Cow position: | chr27:22035487-22035332 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 85, 110 |
| Conread position: | 7-163 |
| Cow position: | chr27:23452352-23452504 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 7-163 |
| Cow position: | chr27:23483117-23483272 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 107, 27 |
| Conread position: | 7-163 |
| Cow position: | chr27:23485102-23485258 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 91, 28 |
| Conread position: | 7-163 |
| Cow position: | chr27:23510879-23511035 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 96, 14 |
| Conread position: | 7-165 |
| Cow position: | chr27:1122922-1123078 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 7-165 |
| Cow position: | chr27:4672903-4673066 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 49, 80 |
| Conread position: | 7-165 |
| Cow position: | chr27:4812993-4812833 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 86, 77 |
| Conread position: | 7-165 |
| Cow position: | chr27:10979753-10979910 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 7-165 |
| Cow position: | chr27:11435432-11435275 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 7-165 |
| Cow position: | chr27:15454101-15454258 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 99, 31 |
| Conread position: | 7-165 |
| Cow position: | chr27:15865497-15865658 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 7-165 |
| Cow position: | chr27:16103701-16103855 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 104, 23 |
| Conread position: | 7-165 |
| Cow position: | chr27:19387909-19388061 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 7-165 |
| Cow position: | chr27:20628959-20629107 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 7-165 |
| Cow position: | chr27:22220444-22220603 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 7-165 |
| Cow position: | chr27:28271260-28271104 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 7-165 |
| Cow position: | chr27:30988688-30988843 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 111, 29 |
| Conread position: | 7-165 |
| Cow position: | chr27:31148651-31148808 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 84, 74 |
| Conread position: | 7-186 |
| Cow position: | chr27:27389133-27388950 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 55, 115 |
| Conread position: | 7-187 |
| Cow position: | chr27:16284365-16284543 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 127 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 111, 134 |
| Conread position: | 7-206 |
| Cow position: | chr27:29593738-29593540 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 182, 33 |
| Conread position: | 7-226 |
| Cow position: | chr27:15215120-15215345 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 102, 67 |
| Conread position: | 8-165 |
| Cow position: | chr27:15378583-15378431 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 100, 25 |
| Conread position: | 8-165 |
| Cow position: | chr27:22171191-22171347 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 110, 27 |
| Conread position: | 9-158 |
| Cow position: | chr27:28206694-28206840 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 90, 38 |
| Conread position: | 9-165 |
| Cow position: | chr27:426862-427015 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 100, 31 |
| Conread position: | 9-165 |
| Cow position: | chr27:8405930-8405778 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 9-165 |
| Cow position: | chr27:14670490-14670337 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 135, 76 |
| Conread position: | 9-185 |
| Cow position: | chr27:21975945-21976117 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 158, 90 |
| Conread position: | 12-163 |
| Cow position: | chr27:20789484-20789332 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 93, 106 |
| Conread position: | 12-165 |
| Cow position: | chr27:23576643-23576492 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 112 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 16-165 |
| Cow position: | chr27:24306728-24306875 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 111 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 103, 19 |
Show alignments to all cow chromosomes.