Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8062A12.3 |
| Conread position: | 1-163 |
| Cow position: | chr28:22332605-22332452 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 1-164 |
| Cow position: | chr28:16370006-16370160 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-165 |
| Cow position: | chr28:8787616-8787454 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 111, 15 |
| Conread position: | 1-165 |
| Cow position: | chr28:16245988-16246148 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 105, 35 |
| Conread position: | 1-169 |
| Cow position: | chr28:3023836-3024004 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 98, 111 |
| Conread position: | 1-191 |
| Cow position: | chr28:21845034-21844849 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 118, 79 |
| Conread position: | 1-191 |
| Cow position: | chr28:22346098-22345909 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 90, 83 |
| Conread position: | 2-165 |
| Cow position: | chr28:4834768-4834927 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 136, 0 |
| Conread position: | 3-143 |
| Cow position: | chr28:25057041-25056903 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 4-159 |
| Cow position: | chr28:2131850-2132002 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 100, 113 |
| Conread position: | 4-165 |
| Cow position: | chr28:11752065-11752226 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 109, 150 |
| Conread position: | 4-165 |
| Cow position: | chr28:26982664-26982822 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 4-186 |
| Cow position: | chr28:9426276-9426461 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 163, 0 |
| Conread position: | 5-145 |
| Cow position: | chr28:3410914-3411057 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 5-162 |
| Cow position: | chr28:4179624-4179471 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 5-163 |
| Cow position: | chr28:11585129-11585288 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 5-165 |
| Cow position: | chr28:2960757-2960917 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 54, 148 |
| Conread position: | 5-165 |
| Cow position: | chr28:32365917-32365757 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-218 |
| Cow position: | chr28:9636384-9636588 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 149 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 158, 81 |
| Conread position: | 7-128 |
| Cow position: | chr28:2762266-2762145 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 98, 87 |
| Conread position: | 7-134 |
| Cow position: | chr28:4438782-4438655 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 99 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 100, 109 |
| Conread position: | 7-142 |
| Cow position: | chr28:7619079-7619215 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 7-146 |
| Cow position: | chr28:4013155-4013020 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 7-151 |
| Cow position: | chr28:11884450-11884591 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 96, 79 |
| Conread position: | 7-157 |
| Cow position: | chr28:19564157-19564307 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 92, 141 |
| Conread position: | 7-158 |
| Cow position: | chr28:6971277-6971429 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 7-158 |
| Cow position: | chr28:11348494-11348351 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 7-159 |
| Cow position: | chr28:3492713-3492864 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 112, 48 |
| Conread position: | 7-161 |
| Cow position: | chr28:5138920-5139078 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 7-161 |
| Cow position: | chr28:12070302-12070154 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 111, 49 |
| Conread position: | 7-163 |
| Cow position: | chr28:4071040-4070886 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 117 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 52, 94 |
| Conread position: | 7-163 |
| Cow position: | chr28:4159026-4158875 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 7-163 |
| Cow position: | chr28:5204266-5204109 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 7-163 |
| Cow position: | chr28:7350725-7350574 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 84, 77 |
| Conread position: | 7-163 |
| Cow position: | chr28:8140553-8140399 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 7-163 |
| Cow position: | chr28:10172346-10172497 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 7-163 |
| Cow position: | chr28:10588950-10589106 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 92, 149 |
| Conread position: | 7-163 |
| Cow position: | chr28:15043791-15043945 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 84, 26 |
| Conread position: | 7-163 |
| Cow position: | chr28:21868528-21868372 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 96, 109 |
| Conread position: | 7-164 |
| Cow position: | chr28:25128957-25128799 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 102, 29 |
| Conread position: | 7-165 |
| Cow position: | chr28:2862939-2862780 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 90, 119 |
| Conread position: | 7-165 |
| Cow position: | chr28:3914788-3914626 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 7-165 |
| Cow position: | chr28:10745285-10745127 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 101, 92 |
| Conread position: | 7-165 |
| Cow position: | chr28:11426470-11426627 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 100, 78 |
| Conread position: | 7-165 |
| Cow position: | chr28:11527188-11527344 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 111, 24 |
| Conread position: | 7-165 |
| Cow position: | chr28:12430676-12430522 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 81, 29 |
| Conread position: | 7-165 |
| Cow position: | chr28:13474371-13474215 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 7-165 |
| Cow position: | chr28:17071408-17071248 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 7-165 |
| Cow position: | chr28:20313348-20313190 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 127, 136 |
| Conread position: | 7-165 |
| Cow position: | chr28:21598181-21598339 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 112 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-165 |
| Cow position: | chr28:27161256-27161413 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 125 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 110, 7 |
| Conread position: | 7-169 |
| Cow position: | chr28:4881169-4881327 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 160, 91 |
| Conread position: | 7-169 |
| Cow position: | chr28:8022032-8022200 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 104, 17 |
| Conread position: | 7-180 |
| Cow position: | chr28:25596699-25596527 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 67, 37 |
| Conread position: | 7-184 |
| Cow position: | chr28:26743697-26743518 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 127 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 94, 109 |
| Conread position: | 7-185 |
| Cow position: | chr28:17012223-17012399 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 149, 89 |
| Conread position: | 7-186 |
| Cow position: | chr28:23410252-23410436 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 133 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 31, 96 |
| Conread position: | 7-186 |
| Cow position: | chr28:30746659-30746839 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 132 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 160, 92 |
| Conread position: | 7-190 |
| Cow position: | chr28:3740947-3740770 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 160, 92 |
| Conread position: | 7-191 |
| Cow position: | chr28:16204263-16204439 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 7-194 |
| Cow position: | chr28:5827021-5826831 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 136 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 161, 92 |
| Conread position: | 7-195 |
| Cow position: | chr28:2752423-2752615 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 160, 97 |
| Conread position: | 7-209 |
| Cow position: | chr28:4182072-4181874 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 8-156 |
| Cow position: | chr28:5128659-5128808 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 47, 40 |
| Conread position: | 8-158 |
| Cow position: | chr28:3160883-3161032 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 108 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 8-163 |
| Cow position: | chr28:18186626-18186471 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 97, 76 |
| Conread position: | 8-165 |
| Cow position: | chr28:26922298-26922452 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 43, 39 |
| Conread position: | 8-186 |
| Cow position: | chr28:23007660-23007845 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 9-141 |
| Cow position: | chr28:26531208-26531343 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 105 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 101, 76 |
| Conread position: | 9-151 |
| Cow position: | chr28:4016600-4016461 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 9-164 |
| Cow position: | chr28:7548989-7549144 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 120 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-165 |
| Cow position: | chr28:25806642-25806487 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 9-191 |
| Cow position: | chr28:20124854-20124673 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 35, 107 |
| Conread position: | 9-200 |
| Cow position: | chr28:23676207-23676019 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 158, 76 |
| Conread position: | 9-207 |
| Cow position: | chr28:21380950-21380753 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 101, 90 |
| Conread position: | 13-163 |
| Cow position: | chr28:7927241-7927091 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 112 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 86, 47 |
| Conread position: | 16-223 |
| Cow position: | chr28:7751239-7751446 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 88, 30 |
| Conread position: | 18-165 |
| Cow position: | chr28:3256858-3256712 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 91, 77 |
| Conread position: | 30-165 |
| Cow position: | chr28:5904780-5904647 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 104 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 91, 54 |
| Conread position: | 40-165 |
| Cow position: | chr28:9285332-9285459 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 100 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 66, 59 |
Show alignments to all cow chromosomes.