Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8062A12.3 |
| Conread position: | 1-165 |
| Cow position: | chr29:2744197-2744364 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 2-163 |
| Cow position: | chr29:36530936-36530777 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 123 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 122, 108 |
| Conread position: | 3-193 |
| Cow position: | chr29:465331-465519 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 164, 96 |
| Conread position: | 4-151 |
| Cow position: | chr29:36249104-36248957 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 95, 113 |
| Conread position: | 4-157 |
| Cow position: | chr29:25814770-25814922 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 103, 32 |
| Conread position: | 4-164 |
| Cow position: | chr29:20924973-20924812 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 104, 112 |
| Conread position: | 4-165 |
| Cow position: | chr29:86944-87108 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 4-165 |
| Cow position: | chr29:17168475-17168313 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 108, 39 |
| Conread position: | 4-165 |
| Cow position: | chr29:21443271-21443433 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 4-165 |
| Cow position: | chr29:24046063-24045901 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 4-165 |
| Cow position: | chr29:31674700-31674538 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 103, 139 |
| Conread position: | 4-165 |
| Cow position: | chr29:35677476-35677639 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 98, 117 |
| Conread position: | 5-133 |
| Cow position: | chr29:31477047-31477177 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 104 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 48, 113 |
| Conread position: | 5-158 |
| Cow position: | chr29:19762334-19762185 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 5-163 |
| Cow position: | chr29:34773671-34773824 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 5-164 |
| Cow position: | chr29:1556997-1556840 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 105, 76 |
| Conread position: | 5-165 |
| Cow position: | chr29:24578929-24578766 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 5-223 |
| Cow position: | chr29:34358912-34359132 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 93, 142 |
| Conread position: | 5-232 |
| Cow position: | chr29:17607484-17607256 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 100, 112 |
| Conread position: | 6-161 |
| Cow position: | chr29:43328709-43328552 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 7-138 |
| Cow position: | chr29:38978596-38978464 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 111 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 84, 77 |
| Conread position: | 7-148 |
| Cow position: | chr29:23220435-23220577 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 107, 89 |
| Conread position: | 7-151 |
| Cow position: | chr29:18012622-18012476 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 110 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 7-160 |
| Cow position: | chr29:25737350-25737505 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 100, 92 |
| Conread position: | 7-162 |
| Cow position: | chr29:7624242-7624087 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 104, 12 |
| Conread position: | 7-163 |
| Cow position: | chr29:12680220-12680068 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 121 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 7-163 |
| Cow position: | chr29:26615656-26615812 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 121 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 98, 109 |
| Conread position: | 7-163 |
| Cow position: | chr29:27329957-27329802 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 7-164 |
| Cow position: | chr29:22162185-22162344 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 7-164 |
| Cow position: | chr29:41530914-41530756 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 7-165 |
| Cow position: | chr29:5046717-5046560 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 7-165 |
| Cow position: | chr29:5063209-5063055 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 7-165 |
| Cow position: | chr29:13372728-13372573 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 7-165 |
| Cow position: | chr29:17297200-17297042 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-165 |
| Cow position: | chr29:35501590-35501743 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 7-166 |
| Cow position: | chr29:29314588-29314748 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 7-191 |
| Cow position: | chr29:22613494-22613309 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 106, 167 |
| Conread position: | 7-192 |
| Cow position: | chr29:23243814-23243998 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 102, 74 |
| Conread position: | 7-197 |
| Cow position: | chr29:15738276-15738467 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 52, 67 |
| Conread position: | 8-162 |
| Cow position: | chr29:9709758-9709606 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 62, 101 |
| Conread position: | 8-163 |
| Cow position: | chr29:26559183-26559331 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 8-165 |
| Cow position: | chr29:4520399-4520243 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 99, 27 |
| Conread position: | 8-191 |
| Cow position: | chr29:21941664-21941476 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 93, 78 |
| Conread position: | 9-149 |
| Cow position: | chr29:28840218-28840077 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 9-158 |
| Cow position: | chr29:5892907-5892757 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 96, 110 |
| Conread position: | 9-163 |
| Cow position: | chr29:5186431-5186586 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 97, 85 |
| Conread position: | 9-163 |
| Cow position: | chr29:8926399-8926553 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 97, 89 |
| Conread position: | 9-165 |
| Cow position: | chr29:4480111-4480264 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 38, 30 |
| Conread position: | 9-165 |
| Cow position: | chr29:29769289-29769443 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 13, 28 |
| Conread position: | 9-168 |
| Cow position: | chr29:24103479-24103639 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 79, 37 |
| Conread position: | 9-205 |
| Cow position: | chr29:21666149-21665953 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 156, 97 |
| Conread position: | 11-168 |
| Cow position: | chr29:39111251-39111409 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 108, 153 |
| Conread position: | 21-164 |
| Cow position: | chr29:41747498-41747353 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 78, 0 |
Show alignments to all cow chromosomes.