Cow genome map

Conread name: Ss1.1-Pig4-TMW8062A12.3

Conread position: 1-158
Cow position: chr9:4341202-4341057 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 122
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 93, 0

Conread position: 1-163
Cow position: chr9:13169706-13169544 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 123
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 118, 109

Conread position: 1-165
Cow position: chr9:26345011-26344848 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 125
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 83, 0

Conread position: 1-193
Cow position: chr9:27029748-27029554 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 141
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 107, 98

Conread position: 2-141
Cow position: chr9:17840720-17840579 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 113
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 101, 0

Conread position: 2-165
Cow position: chr9:41486285-41486121 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 120
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 110, 0

Conread position: 3-163
Cow position: chr9:9406094-9405933 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 121
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 95, 142

Conread position: 3-165
Cow position: chr9:3186085-3186247 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 114
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 3-165
Cow position: chr9:44834004-44833847 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 117
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 96, 0

Conread position: 4-160
Cow position: chr9:50125634-50125479 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 112
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 101, 0

Conread position: 4-161
Cow position: chr9:15805963-15805804 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 117
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 104, 95

Conread position: 4-165
Cow position: chr9:1756185-1756025 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 116
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 95, 0

Conread position: 4-165
Cow position: chr9:6397824-6397662 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 117
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 35, 0

Conread position: 4-165
Cow position: chr9:8901267-8901104 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 118
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 103, 0

Conread position: 4-165
Cow position: chr9:11969146-11969307 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 120
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 68, 81

Conread position: 4-165
Cow position: chr9:21030268-21030428 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 116
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 95, 0

Conread position: 4-168
Cow position: chr9:41282975-41283136 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 119
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 94, 0

Conread position: 4-176
Cow position: chr9:35547228-35547404 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 126
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 97, 169

Conread position: 4-184
Cow position: chr9:45756323-45756504 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 134
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 109, 95

Conread position: 4-214
Cow position: chr9:13994126-13994340 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 145
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 99, 198

Conread position: 5-158
Cow position: chr9:18342694-18342843 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 116
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 112, 76

Conread position: 5-163
Cow position: chr9:34286760-34286920 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 130
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 100, 0

Conread position: 5-163
Cow position: chr9:55256591-55256433 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 114
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 84, 111

Conread position: 5-164
Cow position: chr9:6189404-6189253 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 120
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 78, 86

Conread position: 5-165
Cow position: chr9:5227211-5227051 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 124
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 108, 51

Conread position: 5-196
Cow position: chr9:52839919-52839737 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 136
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 9, 0

Conread position: 7-145
Cow position: chr9:29195061-29194923 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 104
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 112, 124

Conread position: 7-147
Cow position: chr9:39011506-39011367 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 108
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 133, 91

Conread position: 7-150
Cow position: chr9:19067746-19067889 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 112
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 99, 33

Conread position: 7-151
Cow position: chr9:5763668-5763526 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 116
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 95, 40

Conread position: 7-151
Cow position: chr9:28754780-28754925 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 116
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 91, 110

Conread position: 7-151
Cow position: chr9:32982112-32981966 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 119
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 52, 94

Conread position: 7-151
Cow position: chr9:45285572-45285421 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 121
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 100, 0

Conread position: 7-157
Cow position: chr9:20091009-20091159 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 117
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 53, 93

Conread position: 7-159
Cow position: chr9:23956017-23955870 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 122
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 111, 78

Conread position: 7-159
Cow position: chr9:64091643-64091798 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 118
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 100, 92

Conread position: 7-162
Cow position: chr9:54493098-54493254 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 120
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 97, 111

Conread position: 7-163
Cow position: chr9:4268019-4267866 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 116
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 92, 0

Conread position: 7-163
Cow position: chr9:9552053-9552210 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 118
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 103, 92

Conread position: 7-163
Cow position: chr9:26279206-26279054 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 118
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 78, 0

Conread position: 7-163
Cow position: chr9:28747557-28747405 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 120
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 93, 0

Conread position: 7-163
Cow position: chr9:31079117-31078965 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 118
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 19, 0

Conread position: 7-163
Cow position: chr9:33119925-33119768 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 121
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 107, 89

Conread position: 7-163
Cow position: chr9:33584722-33584565 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 119
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 106, 70

Conread position: 7-163
Cow position: chr9:34958093-34957937 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 121
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 85, 111

Conread position: 7-163
Cow position: chr9:43875756-43875596 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 121
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 17, 113

Conread position: 7-163
Cow position: chr9:45141637-45141484 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 115
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 92, 0

Conread position: 7-163
Cow position: chr9:48627991-48628146 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 115
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 97, 134

Conread position: 7-163
Cow position: chr9:49293180-49293028 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 124
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 92, 0

Conread position: 7-163
Cow position: chr9:51620408-51620555 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 118
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 41, 0

Conread position: 7-163
Cow position: chr9:59013376-59013216 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 124
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 79, 32

Conread position: 7-164
Cow position: chr9:11168693-11168848 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 113
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 93, 0

Conread position: 7-165
Cow position: chr9:10819865-10819713 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 120
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 41, 0

Conread position: 7-165
Cow position: chr9:19493503-19493343 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 119
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 99, 92

Conread position: 7-165
Cow position: chr9:21888133-21888286 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 116
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 45, 0

Conread position: 7-165
Cow position: chr9:26403748-26403904 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 115
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 92, 0

Conread position: 7-165
Cow position: chr9:39681302-39681459 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 113
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 108, 0

Conread position: 7-165
Cow position: chr9:40005437-40005595 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 114
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 100, 109

Conread position: 7-165
Cow position: chr9:51720934-51720783 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 118
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 52, 0

Conread position: 7-165
Cow position: chr9:61302963-61303123 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 114
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 101, 0

Conread position: 7-170
Cow position: chr9:6952064-6952230 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 127
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 37, 46

Conread position: 7-188
Cow position: chr9:43870938-43871122 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 135
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 47, 41

Conread position: 7-191
Cow position: chr9:6192497-6192318 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 132
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 24, 78

Conread position: 7-191
Cow position: chr9:12910438-12910257 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 131
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 158, 91

Conread position: 7-196
Cow position: chr9:21460188-21460001 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 137
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 92, 28

Conread position: 7-198
Cow position: chr9:5219209-5219017 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 146
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 43, 105

Conread position: 7-198
Cow position: chr9:42446020-42445825 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 137
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 92, 0

Conread position: 8-163
Cow position: chr9:7634235-7634391 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 120
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 89, 110

Conread position: 8-191
Cow position: chr9:10905853-10905667 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 132
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 100, 108

Conread position: 8-191
Cow position: chr9:17799589-17799774 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 131
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 15, 157

Conread position: 8-229
Cow position: chr9:32669983-32669766 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 149
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 100, 91

Conread position: 9-163
Cow position: chr9:29006522-29006680 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 123
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 89, 0

Conread position: 9-165
Cow position: chr9:5263464-5263621 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 118
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 97, 24

Conread position: 9-165
Cow position: chr9:27279274-27279428 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 112
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 90, 0

Conread position: 9-165
Cow position: chr9:28726759-28726601 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 114
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 88, 0

Conread position: 9-165
Cow position: chr9:38792981-38793133 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 116
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 87, 0

Conread position: 9-165
Cow position: chr9:50606980-50606829 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 117
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 111, 22

Conread position: 9-165
Cow position: chr9:52267790-52267637 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 116
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 26, 0

Conread position: 11-189
Cow position: chr9:5433599-5433786 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 134
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 88, 0

Conread position: 13-163
Cow position: chr9:44832085-44831937 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 113
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 106, 23

Conread position: 14-163
Cow position: chr9:5441959-5442109 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 111
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 105, 85

Conread position: 14-165
Cow position: chr9:38343860-38344010 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 117
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 87, 18

Conread position: 16-163
Cow position: chr9:41728230-41728376 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 115
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 97, 109

Conread position: 16-165
Cow position: chr9:6225482-6225334 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 111
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 85, 14

Conread position: 18-163
Cow position: chr9:6596262-6596117 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 117
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 103, 81

Conread position: 18-191
Cow position: chr9:20847903-20848076 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 125
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 94, 145

Conread position: 21-196
Cow position: chr9:21080538-21080711 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 130
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 95, 78

Show alignments to all cow chromosomes.