Cow genome map

Conread name: Ss1.1-Pig4-TMW8063E11.3

Conread position: 1-303
Cow position: chr10:37040533-37040829 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 202
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 33, 134

Conread position: 1-340
Cow position: chr10:14951171-14951496 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 242
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 70, 151

Conread position: 1-409
Cow position: chr10:14886394-14885994 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 278
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 71, 39

Conread position: 1-573
Cow position: chr10:37060373-37060957 (view UCSC Genome Browser custom track)
Alignm length: 598
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 134

Conread position: 1-625
Cow position: chr10:57990511-57989875 (view UCSC Genome Browser custom track)
Alignm length: 651
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 41

Conread position: 1-658
Cow position: chr10:29847174-29846485 (view UCSC Genome Browser custom track)
Alignm length: 694
Alignm identity: 472
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 125

Conread position: 1-679
Cow position: chr10:19839585-19840298 (view UCSC Genome Browser custom track)
Alignm length: 717
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 147

Conread position: 1-698
Cow position: chr10:7283236-7282522 (view UCSC Genome Browser custom track)
Alignm length: 730
Alignm identity: 486
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 134

Conread position: 1-698
Cow position: chr10:22100686-22101397 (view UCSC Genome Browser custom track)
Alignm length: 730
Alignm identity: 479
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 134

Conread position: 1-707
Cow position: chr10:1374983-1375705 (view UCSC Genome Browser custom track)
Alignm length: 735
Alignm identity: 498
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 100

Conread position: 1-707
Cow position: chr10:8289412-8290157 (view UCSC Genome Browser custom track)
Alignm length: 754
Alignm identity: 502
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 134

Conread position: 1-707
Cow position: chr10:19143896-19143164 (view UCSC Genome Browser custom track)
Alignm length: 741
Alignm identity: 499
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 119

Conread position: 1-707
Cow position: chr10:21486362-21487088 (view UCSC Genome Browser custom track)
Alignm length: 739
Alignm identity: 495
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 134

Conread position: 1-707
Cow position: chr10:24299407-24298680 (view UCSC Genome Browser custom track)
Alignm length: 738
Alignm identity: 534
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 144

Conread position: 1-707
Cow position: chr10:32650184-32650907 (view UCSC Genome Browser custom track)
Alignm length: 733
Alignm identity: 497
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 134

Conread position: 1-707
Cow position: chr10:37769269-37769995 (view UCSC Genome Browser custom track)
Alignm length: 740
Alignm identity: 502
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 135

Conread position: 1-707
Cow position: chr10:38345930-38345188 (view UCSC Genome Browser custom track)
Alignm length: 745
Alignm identity: 496
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 144

Conread position: 1-707
Cow position: chr10:38539047-38538323 (view UCSC Genome Browser custom track)
Alignm length: 734
Alignm identity: 493
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 134

Conread position: 1-707
Cow position: chr10:39041862-39041128 (view UCSC Genome Browser custom track)
Alignm length: 743
Alignm identity: 498
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 134

Conread position: 1-707
Cow position: chr10:49309990-49310677 (view UCSC Genome Browser custom track)
Alignm length: 725
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 87

Conread position: 1-707
Cow position: chr10:62409408-62408683 (view UCSC Genome Browser custom track)
Alignm length: 739
Alignm identity: 487
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 134

Conread position: 2-698
Cow position: chr10:123771-124475 (view UCSC Genome Browser custom track)
Alignm length: 718
Alignm identity: 475
Alignm E-value: 0
Alignm gaps (pig, cow): 345, 56

Conread position: 2-707
Cow position: chr10:34318806-34318117 (view UCSC Genome Browser custom track)
Alignm length: 718
Alignm identity: 477
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 128

Conread position: 2-707
Cow position: chr10:38546783-38546051 (view UCSC Genome Browser custom track)
Alignm length: 748
Alignm identity: 493
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 211

Conread position: 4-683
Cow position: chr10:21901735-21901052 (view UCSC Genome Browser custom track)
Alignm length: 709
Alignm identity: 433
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 44, 82

Conread position: 4-684
Cow position: chr10:60489104-60489804 (view UCSC Genome Browser custom track)
Alignm length: 707
Alignm identity: 515
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 275

Conread position: 4-707
Cow position: chr10:14859434-14860141 (view UCSC Genome Browser custom track)
Alignm length: 729
Alignm identity: 508
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 62

Conread position: 5-598
Cow position: chr10:31523313-31523879 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 387
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 36, 128

Conread position: 5-707
Cow position: chr10:4499155-4499855 (view UCSC Genome Browser custom track)
Alignm length: 719
Alignm identity: 492
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 167

Conread position: 5-707
Cow position: chr10:46190833-46191532 (view UCSC Genome Browser custom track)
Alignm length: 720
Alignm identity: 522
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 34

Conread position: 7-703
Cow position: chr10:62216064-62216776 (view UCSC Genome Browser custom track)
Alignm length: 731
Alignm identity: 501
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 119

Conread position: 7-707
Cow position: chr10:25497813-25498526 (view UCSC Genome Browser custom track)
Alignm length: 733
Alignm identity: 506
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 127

Conread position: 7-707
Cow position: chr10:34685358-34686067 (view UCSC Genome Browser custom track)
Alignm length: 731
Alignm identity: 492
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 126

Conread position: 7-707
Cow position: chr10:62777805-62778521 (view UCSC Genome Browser custom track)
Alignm length: 738
Alignm identity: 504
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 125

Conread position: 13-707
Cow position: chr10:19511069-19511780 (view UCSC Genome Browser custom track)
Alignm length: 726
Alignm identity: 492
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 120

Conread position: 35-661
Cow position: chr10:42747589-42748217 (view UCSC Genome Browser custom track)
Alignm length: 651
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 10

Conread position: 71-698
Cow position: chr10:32063670-32064313 (view UCSC Genome Browser custom track)
Alignm length: 663
Alignm identity: 419
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 156, 58

Conread position: 116-569
Cow position: chr10:20383953-20383515 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 306
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 298, 64

Conread position: 124-327
Cow position: chr10:42736076-42736273 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 142
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 106, 20

Conread position: 128-409
Cow position: chr10:21466820-21467112 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 196
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 31, 82

Conread position: 128-706
Cow position: chr10:57559982-57559376 (view UCSC Genome Browser custom track)
Alignm length: 612
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 82

Conread position: 128-707
Cow position: chr10:11686090-11685497 (view UCSC Genome Browser custom track)
Alignm length: 601
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 60

Conread position: 128-707
Cow position: chr10:21401100-21400497 (view UCSC Genome Browser custom track)
Alignm length: 609
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 66

Conread position: 128-707
Cow position: chr10:39179358-39179957 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 82

Conread position: 128-707
Cow position: chr10:39817779-39817189 (view UCSC Genome Browser custom track)
Alignm length: 601
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 62

Conread position: 128-707
Cow position: chr10:41157021-41157621 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 82

Conread position: 128-708
Cow position: chr10:21741184-21740577 (view UCSC Genome Browser custom track)
Alignm length: 611
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 83

Conread position: 138-707
Cow position: chr10:4192638-4192059 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 72

Conread position: 138-707
Cow position: chr10:41876498-41877093 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 72

Conread position: 150-331
Cow position: chr10:28116844-28116665 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 132
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 49, 5

Conread position: 157-707
Cow position: chr10:41352160-41351586 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 118

Conread position: 158-680
Cow position: chr10:42109331-42109868 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 92

Conread position: 158-707
Cow position: chr10:281023-280447 (view UCSC Genome Browser custom track)
Alignm length: 582
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 50

Conread position: 158-707
Cow position: chr10:14803432-14804010 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 50

Conread position: 158-707
Cow position: chr10:32577898-32578463 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 50

Conread position: 158-707
Cow position: chr10:47906379-47906952 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 50

Conread position: 158-707
Cow position: chr10:51953005-51952444 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 50

Conread position: 159-669
Cow position: chr10:3543970-3543446 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 199, 48

Conread position: 159-707
Cow position: chr10:38846978-38847532 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 29

Conread position: 159-707
Cow position: chr10:41566710-41567277 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 37

Conread position: 163-412
Cow position: chr10:19715442-19715186 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 180
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 151, 90

Conread position: 164-676
Cow position: chr10:24978531-24977994 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 341
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 23, 33

Conread position: 165-683
Cow position: chr10:58377956-58377440 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 345
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 146, 82

Conread position: 171-707
Cow position: chr10:54059736-54059182 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 36

Conread position: 172-706
Cow position: chr10:29695858-29696409 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 165

Conread position: 180-707
Cow position: chr10:25565623-25565084 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 23

Conread position: 185-707
Cow position: chr10:276218-276763 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 11

Conread position: 196-707
Cow position: chr10:25359040-25359573 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 11

Conread position: 215-707
Cow position: chr10:10478476-10477967 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 95

Conread position: 222-569
Cow position: chr10:8328631-8328295 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 240
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 194, 108

Conread position: 233-643
Cow position: chr10:42628347-42628766 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 280
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 93, 56

Conread position: 250-708
Cow position: chr10:42663928-42664370 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 318
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 105, 43

Conread position: 267-707
Cow position: chr10:29633152-29632689 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 31

Conread position: 316-686
Cow position: chr10:24314061-24313683 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 256
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 31, 36

Conread position: 359-692
Cow position: chr10:21518525-21518188 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 230
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 61, 23

Conread position: 359-706
Cow position: chr10:13366046-13365697 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 251
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 48, 227

Conread position: 369-707
Cow position: chr10:14951739-14952051 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 231
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 130, 38

Conread position: 409-683
Cow position: chr10:39904795-39905074 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 202
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 65, 273

Conread position: 416-706
Cow position: chr10:15862259-15861964 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 82

Conread position: 417-707
Cow position: chr10:10415307-10415571 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 208
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 148, 55

Conread position: 421-611
Cow position: chr10:65308004-65308201 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 142
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 72, 0

Conread position: 421-707
Cow position: chr10:19496397-19496112 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 204
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 77, 46

Conread position: 422-706
Cow position: chr10:38404626-38404341 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 189
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 85, 98

Conread position: 422-707
Cow position: chr10:39854133-39853840 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 0

Conread position: 423-677
Cow position: chr10:22842663-22842916 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 180
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 76, 136

Conread position: 425-701
Cow position: chr10:66176016-66175741 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 189
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 73, 63

Conread position: 426-582
Cow position: chr10:28932459-28932306 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 119
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 23, 10

Conread position: 448-707
Cow position: chr10:16925442-16925710 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 192
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 50, 0

Conread position: 450-707
Cow position: chr10:46694466-46694202 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 190
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 48, 190

Conread position: 476-707
Cow position: chr10:2123327-2123088 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 172
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 22, 0

Conread position: 514-696
Cow position: chr10:54979906-54979724 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 135
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 29, 109

Conread position: 521-707
Cow position: chr10:40152473-40152281 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 135
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 52, 159

Conread position: 571-707
Cow position: chr10:55093279-55093415 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 111
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 61, 46

Conread position: 571-708
Cow position: chr10:19758388-19758526 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 108
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 119, 0

Conread position: 575-706
Cow position: chr10:28931984-28931852 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 110
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 114, 0

Show alignments to all cow chromosomes.