Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8063E11.3 |
| Conread position: | 1-249 |
| Cow position: | chr12:28766731-28766487 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 45, 134 |
| Conread position: | 1-487 |
| Cow position: | chr12:2840217-2839724 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 31 |
| Conread position: | 1-669 |
| Cow position: | chr12:21499489-21500176 (view UCSC Genome Browser custom track) |
| Alignm length: | 700 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 134 |
| Conread position: | 1-698 |
| Cow position: | chr12:22206372-22205657 (view UCSC Genome Browser custom track) |
| Alignm length: | 729 |
| Alignm identity: | 481 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 134 |
| Conread position: | 1-699 |
| Cow position: | chr12:1401862-1402581 (view UCSC Genome Browser custom track) |
| Alignm length: | 728 |
| Alignm identity: | 486 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 126 |
| Conread position: | 1-707 |
| Cow position: | chr12:6407274-6406549 (view UCSC Genome Browser custom track) |
| Alignm length: | 739 |
| Alignm identity: | 495 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 134 |
| Conread position: | 1-707 |
| Cow position: | chr12:27933574-27932846 (view UCSC Genome Browser custom track) |
| Alignm length: | 740 |
| Alignm identity: | 503 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 119 |
| Conread position: | 1-708 |
| Cow position: | chr12:20998759-20998026 (view UCSC Genome Browser custom track) |
| Alignm length: | 742 |
| Alignm identity: | 487 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 55 |
| Conread position: | 2-707 |
| Cow position: | chr12:252688-251957 (view UCSC Genome Browser custom track) |
| Alignm length: | 744 |
| Alignm identity: | 496 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 133 |
| Conread position: | 2-707 |
| Cow position: | chr12:8678749-8678023 (view UCSC Genome Browser custom track) |
| Alignm length: | 737 |
| Alignm identity: | 492 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 100 |
| Conread position: | 2-707 |
| Cow position: | chr12:42860447-42859728 (view UCSC Genome Browser custom track) |
| Alignm length: | 733 |
| Alignm identity: | 490 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 132 |
| Conread position: | 4-533 |
| Cow position: | chr12:21197197-21197745 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 348 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 42, 129 |
| Conread position: | 6-259 |
| Cow position: | chr12:22121096-22121349 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 37, 191 |
| Conread position: | 7-689 |
| Cow position: | chr12:45261027-45261695 (view UCSC Genome Browser custom track) |
| Alignm length: | 702 |
| Alignm identity: | 466 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 125 |
| Conread position: | 13-707 |
| Cow position: | chr12:11097622-11098341 (view UCSC Genome Browser custom track) |
| Alignm length: | 727 |
| Alignm identity: | 492 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 121 |
| Conread position: | 20-707 |
| Cow position: | chr12:2281921-2282645 (view UCSC Genome Browser custom track) |
| Alignm length: | 727 |
| Alignm identity: | 469 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 281 |
| Conread position: | 45-678 |
| Cow position: | chr12:25101649-25100992 (view UCSC Genome Browser custom track) |
| Alignm length: | 666 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 87 |
| Conread position: | 124-686 |
| Cow position: | chr12:15951759-15951183 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 66 |
| Conread position: | 128-707 |
| Cow position: | chr12:3360403-3361003 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 82 |
| Conread position: | 128-707 |
| Cow position: | chr12:26141303-26141913 (view UCSC Genome Browser custom track) |
| Alignm length: | 612 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 82 |
| Conread position: | 128-707 |
| Cow position: | chr12:43031884-43031285 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 83 |
| Conread position: | 129-707 |
| Cow position: | chr12:21426196-21426793 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 65 |
| Conread position: | 138-707 |
| Cow position: | chr12:21255149-21254557 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 72 |
| Conread position: | 138-707 |
| Cow position: | chr12:37558059-37558654 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 72 |
| Conread position: | 138-708 |
| Cow position: | chr12:32653047-32653644 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 71 |
| Conread position: | 143-465 |
| Cow position: | chr12:3630702-3631028 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 264, 11 |
| Conread position: | 159-707 |
| Cow position: | chr12:21207220-21207793 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 49 |
| Conread position: | 161-703 |
| Cow position: | chr12:2321-2894 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 56 |
| Conread position: | 164-707 |
| Cow position: | chr12:1137124-1137685 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 355 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 143, 52 |
| Conread position: | 166-708 |
| Cow position: | chr12:347387-347926 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 360 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 182, 30 |
| Conread position: | 185-652 |
| Cow position: | chr12:13949930-13949471 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 309 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 172, 24 |
| Conread position: | 196-708 |
| Cow position: | chr12:22332179-22332725 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 82 |
| Conread position: | 209-707 |
| Cow position: | chr12:21941352-21941864 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 350 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 106, 256 |
| Conread position: | 214-707 |
| Cow position: | chr12:21901531-21902038 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 123 |
| Conread position: | 214-708 |
| Cow position: | chr12:8310762-8311281 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 388 |
| Conread position: | 219-594 |
| Cow position: | chr12:22026341-22026733 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 255 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 83, 121 |
| Conread position: | 225-599 |
| Cow position: | chr12:48404639-48405034 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 289 |
| Conread position: | 225-707 |
| Cow position: | chr12:14663021-14662534 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 336 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 89, 226 |
| Conread position: | 251-707 |
| Cow position: | chr12:28766401-28765920 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 80 |
| Conread position: | 360-706 |
| Cow position: | chr12:8982680-8982325 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 246 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 51, 243 |
| Conread position: | 421-703 |
| Cow position: | chr12:26947175-26946897 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 205 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 79, 152 |
| Conread position: | 429-699 |
| Cow position: | chr12:17975364-17975627 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 65, 169 |
| Conread position: | 444-698 |
| Cow position: | chr12:3632426-3632173 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 55, 192 |
| Conread position: | 505-707 |
| Cow position: | chr12:18500941-18501142 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 61, 27 |
Show alignments to all cow chromosomes.