Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8063E11.3 |
| Conread position: | 1-413 |
| Cow position: | chr13:15542613-15543030 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 284 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 45, 134 |
| Conread position: | 1-436 |
| Cow position: | chr13:34768058-34767653 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 290 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 126, 36 |
| Conread position: | 1-596 |
| Cow position: | chr13:46733180-46732592 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 51 |
| Conread position: | 1-629 |
| Cow position: | chr13:32544101-32544741 (view UCSC Genome Browser custom track) |
| Alignm length: | 655 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 134 |
| Conread position: | 1-678 |
| Cow position: | chr13:20543207-20542525 (view UCSC Genome Browser custom track) |
| Alignm length: | 703 |
| Alignm identity: | 475 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 50 |
| Conread position: | 1-698 |
| Cow position: | chr13:15925236-15924515 (view UCSC Genome Browser custom track) |
| Alignm length: | 730 |
| Alignm identity: | 484 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 134 |
| Conread position: | 1-698 |
| Cow position: | chr13:31613188-31612466 (view UCSC Genome Browser custom track) |
| Alignm length: | 730 |
| Alignm identity: | 494 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 132 |
| Conread position: | 1-698 |
| Cow position: | chr13:34043215-34042500 (view UCSC Genome Browser custom track) |
| Alignm length: | 727 |
| Alignm identity: | 491 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 132 |
| Conread position: | 1-706 |
| Cow position: | chr13:30245612-30244856 (view UCSC Genome Browser custom track) |
| Alignm length: | 758 |
| Alignm identity: | 495 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 229 |
| Conread position: | 1-707 |
| Cow position: | chr13:1594008-1593277 (view UCSC Genome Browser custom track) |
| Alignm length: | 742 |
| Alignm identity: | 494 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 134 |
| Conread position: | 1-707 |
| Cow position: | chr13:4940233-4940966 (view UCSC Genome Browser custom track) |
| Alignm length: | 742 |
| Alignm identity: | 502 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 10 |
| Conread position: | 1-707 |
| Cow position: | chr13:6668995-6668245 (view UCSC Genome Browser custom track) |
| Alignm length: | 753 |
| Alignm identity: | 500 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 132 |
| Conread position: | 1-707 |
| Cow position: | chr13:15521375-15520637 (view UCSC Genome Browser custom track) |
| Alignm length: | 742 |
| Alignm identity: | 503 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 137 |
| Conread position: | 1-707 |
| Cow position: | chr13:32738660-32737944 (view UCSC Genome Browser custom track) |
| Alignm length: | 733 |
| Alignm identity: | 490 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 109 |
| Conread position: | 1-707 |
| Cow position: | chr13:33337172-33336464 (view UCSC Genome Browser custom track) |
| Alignm length: | 736 |
| Alignm identity: | 494 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 102 |
| Conread position: | 1-707 |
| Cow position: | chr13:34187540-34186807 (view UCSC Genome Browser custom track) |
| Alignm length: | 747 |
| Alignm identity: | 520 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 193 |
| Conread position: | 1-707 |
| Cow position: | chr13:34326544-34325796 (view UCSC Genome Browser custom track) |
| Alignm length: | 751 |
| Alignm identity: | 498 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 218 |
| Conread position: | 1-707 |
| Cow position: | chr13:35756382-35757119 (view UCSC Genome Browser custom track) |
| Alignm length: | 749 |
| Alignm identity: | 503 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 134 |
| Conread position: | 2-413 |
| Cow position: | chr13:33279197-33278798 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 284 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 36, 67 |
| Conread position: | 2-707 |
| Cow position: | chr13:9043680-9044379 (view UCSC Genome Browser custom track) |
| Alignm length: | 733 |
| Alignm identity: | 494 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 134 |
| Conread position: | 2-707 |
| Cow position: | chr13:15081021-15080336 (view UCSC Genome Browser custom track) |
| Alignm length: | 716 |
| Alignm identity: | 457 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 15 |
| Conread position: | 2-708 |
| Cow position: | chr13:30657804-30657095 (view UCSC Genome Browser custom track) |
| Alignm length: | 730 |
| Alignm identity: | 501 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 131 |
| Conread position: | 2-708 |
| Cow position: | chr13:48356476-48357184 (view UCSC Genome Browser custom track) |
| Alignm length: | 727 |
| Alignm identity: | 502 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 50 |
| Conread position: | 3-707 |
| Cow position: | chr13:30302222-30302942 (view UCSC Genome Browser custom track) |
| Alignm length: | 735 |
| Alignm identity: | 497 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 116 |
| Conread position: | 7-703 |
| Cow position: | chr13:3276319-3277028 (view UCSC Genome Browser custom track) |
| Alignm length: | 732 |
| Alignm identity: | 502 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 128 |
| Conread position: | 7-707 |
| Cow position: | chr13:31831773-31832478 (view UCSC Genome Browser custom track) |
| Alignm length: | 726 |
| Alignm identity: | 499 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 126 |
| Conread position: | 7-707 |
| Cow position: | chr13:34692338-34693041 (view UCSC Genome Browser custom track) |
| Alignm length: | 734 |
| Alignm identity: | 507 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 126 |
| Conread position: | 7-707 |
| Cow position: | chr13:62328417-62327706 (view UCSC Genome Browser custom track) |
| Alignm length: | 731 |
| Alignm identity: | 492 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 126 |
| Conread position: | 7-708 |
| Cow position: | chr13:2909278-2908571 (view UCSC Genome Browser custom track) |
| Alignm length: | 731 |
| Alignm identity: | 505 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 126 |
| Conread position: | 13-692 |
| Cow position: | chr13:3655148-3654449 (view UCSC Genome Browser custom track) |
| Alignm length: | 708 |
| Alignm identity: | 476 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 122 |
| Conread position: | 17-706 |
| Cow position: | chr13:30063330-30064003 (view UCSC Genome Browser custom track) |
| Alignm length: | 706 |
| Alignm identity: | 453 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 61 |
| Conread position: | 18-707 |
| Cow position: | chr13:33825564-33824853 (view UCSC Genome Browser custom track) |
| Alignm length: | 728 |
| Alignm identity: | 487 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 115 |
| Conread position: | 40-686 |
| Cow position: | chr13:54283780-54284428 (view UCSC Genome Browser custom track) |
| Alignm length: | 669 |
| Alignm identity: | 467 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 154 |
| Conread position: | 100-686 |
| Cow position: | chr13:31560437-31561044 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 398 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 26, 79 |
| Conread position: | 116-682 |
| Cow position: | chr13:30140252-30140845 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 77 |
| Conread position: | 128-412 |
| Cow position: | chr13:53834041-53834336 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 31, 82 |
| Conread position: | 128-452 |
| Cow position: | chr13:35029798-35030127 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 226 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 25, 10 |
| Conread position: | 128-707 |
| Cow position: | chr13:2389527-2388940 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 82 |
| Conread position: | 128-707 |
| Cow position: | chr13:4872347-4872955 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 83 |
| Conread position: | 128-707 |
| Cow position: | chr13:21840927-21840316 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 82 |
| Conread position: | 128-707 |
| Cow position: | chr13:49972984-49973562 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 190 |
| Conread position: | 138-698 |
| Cow position: | chr13:32986765-32986188 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 124 |
| Conread position: | 138-707 |
| Cow position: | chr13:2297512-2296920 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 52 |
| Conread position: | 138-707 |
| Cow position: | chr13:31734793-31734203 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 178 |
| Conread position: | 138-707 |
| Cow position: | chr13:50108746-50109340 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 72 |
| Conread position: | 151-663 |
| Cow position: | chr13:34868066-34868606 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 12 |
| Conread position: | 158-707 |
| Cow position: | chr13:17307786-17308353 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 50 |
| Conread position: | 164-675 |
| Cow position: | chr13:2231979-2232505 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 160 |
| Conread position: | 165-574 |
| Cow position: | chr13:60704209-60703794 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 265 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 149, 36 |
| Conread position: | 172-512 |
| Cow position: | chr13:13046506-13046148 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 248 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 59, 345 |
| Conread position: | 172-703 |
| Cow position: | chr13:33928227-33927696 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 39 |
| Conread position: | 185-708 |
| Cow position: | chr13:34936469-34937026 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 15 |
| Conread position: | 198-707 |
| Cow position: | chr13:34912023-34911500 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 245 |
| Conread position: | 214-707 |
| Cow position: | chr13:34143302-34142781 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 419 |
| Conread position: | 354-707 |
| Cow position: | chr13:13324263-13324627 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 250 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 64, 109 |
| Conread position: | 356-707 |
| Cow position: | chr13:56730765-56730408 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 260 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 55, 21 |
| Conread position: | 383-682 |
| Cow position: | chr13:19438487-19438785 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 202 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 29, 12 |
| Conread position: | 408-707 |
| Cow position: | chr13:21130900-21131198 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 201 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 90, 61 |
| Conread position: | 415-707 |
| Cow position: | chr13:2583722-2583428 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 59, 55 |
| Conread position: | 416-707 |
| Cow position: | chr13:23003936-23003638 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 276 |
| Conread position: | 458-680 |
| Cow position: | chr13:15451863-15451649 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 41, 101 |
| Conread position: | 471-707 |
| Cow position: | chr13:34767641-34767408 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 29, 62 |
| Conread position: | 475-686 |
| Cow position: | chr13:3567423-3567639 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 103, 30 |
| Conread position: | 538-686 |
| Cow position: | chr13:10114949-10114793 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 123 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 552-707 |
| Cow position: | chr13:47230265-47230109 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 138, 0 |
Show alignments to all cow chromosomes.