Cow genome map

Conread name: Ss1.1-Pig4-TMW8063E11.3

Conread position: 1-411
Cow position: chr14:46463819-46464230 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 276
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 36, 211

Conread position: 1-430
Cow position: chr14:44551070-44551513 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 296
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 48, 196

Conread position: 1-500
Cow position: chr14:44780889-44780376 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 345
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 45, 73

Conread position: 1-642
Cow position: chr14:44579975-44580608 (view UCSC Genome Browser custom track)
Alignm length: 659
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 150

Conread position: 1-681
Cow position: chr14:44783229-44782532 (view UCSC Genome Browser custom track)
Alignm length: 710
Alignm identity: 462
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 73

Conread position: 1-683
Cow position: chr14:50109612-50110295 (view UCSC Genome Browser custom track)
Alignm length: 718
Alignm identity: 456
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 48, 119

Conread position: 1-688
Cow position: chr14:47588905-47589603 (view UCSC Genome Browser custom track)
Alignm length: 714
Alignm identity: 440
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 40, 134

Conread position: 1-698
Cow position: chr14:20781482-20782201 (view UCSC Genome Browser custom track)
Alignm length: 728
Alignm identity: 491
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 134

Conread position: 1-707
Cow position: chr14:7471399-7472128 (view UCSC Genome Browser custom track)
Alignm length: 740
Alignm identity: 490
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 134

Conread position: 1-707
Cow position: chr14:11155130-11154411 (view UCSC Genome Browser custom track)
Alignm length: 735
Alignm identity: 493
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 134

Conread position: 1-707
Cow position: chr14:11467633-11468340 (view UCSC Genome Browser custom track)
Alignm length: 738
Alignm identity: 495
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 63

Conread position: 1-707
Cow position: chr14:13302051-13302784 (view UCSC Genome Browser custom track)
Alignm length: 743
Alignm identity: 495
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 134

Conread position: 1-707
Cow position: chr14:16274274-16273541 (view UCSC Genome Browser custom track)
Alignm length: 741
Alignm identity: 498
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 119

Conread position: 1-707
Cow position: chr14:17002025-17001300 (view UCSC Genome Browser custom track)
Alignm length: 741
Alignm identity: 497
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 128

Conread position: 1-707
Cow position: chr14:17684426-17685150 (view UCSC Genome Browser custom track)
Alignm length: 737
Alignm identity: 506
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 132

Conread position: 1-707
Cow position: chr14:19329243-19328514 (view UCSC Genome Browser custom track)
Alignm length: 738
Alignm identity: 504
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 135

Conread position: 1-707
Cow position: chr14:22032655-22031933 (view UCSC Genome Browser custom track)
Alignm length: 741
Alignm identity: 505
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 116

Conread position: 1-707
Cow position: chr14:23691194-23690475 (view UCSC Genome Browser custom track)
Alignm length: 739
Alignm identity: 493
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 132

Conread position: 1-707
Cow position: chr14:37222925-37223656 (view UCSC Genome Browser custom track)
Alignm length: 740
Alignm identity: 507
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 132

Conread position: 1-707
Cow position: chr14:40338718-40339437 (view UCSC Genome Browser custom track)
Alignm length: 744
Alignm identity: 507
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 82

Conread position: 1-707
Cow position: chr14:41406865-41407576 (view UCSC Genome Browser custom track)
Alignm length: 733
Alignm identity: 453
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 39, 364

Conread position: 1-707
Cow position: chr14:41754896-41755598 (view UCSC Genome Browser custom track)
Alignm length: 724
Alignm identity: 448
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 38, 83

Conread position: 1-707
Cow position: chr14:44376450-44377183 (view UCSC Genome Browser custom track)
Alignm length: 740
Alignm identity: 500
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 38

Conread position: 1-707
Cow position: chr14:46083652-46084377 (view UCSC Genome Browser custom track)
Alignm length: 743
Alignm identity: 504
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 26

Conread position: 1-707
Cow position: chr14:48255289-48254561 (view UCSC Genome Browser custom track)
Alignm length: 740
Alignm identity: 488
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 134

Conread position: 1-708
Cow position: chr14:5528090-5528817 (view UCSC Genome Browser custom track)
Alignm length: 735
Alignm identity: 508
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 134

Conread position: 2-652
Cow position: chr14:45159867-45160546 (view UCSC Genome Browser custom track)
Alignm length: 693
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 565

Conread position: 2-707
Cow position: chr14:13272278-13273006 (view UCSC Genome Browser custom track)
Alignm length: 737
Alignm identity: 485
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 87

Conread position: 3-686
Cow position: chr14:31607881-31607197 (view UCSC Genome Browser custom track)
Alignm length: 712
Alignm identity: 471
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 49

Conread position: 3-707
Cow position: chr14:28994833-28994100 (view UCSC Genome Browser custom track)
Alignm length: 743
Alignm identity: 503
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 134

Conread position: 4-636
Cow position: chr14:45833190-45833846 (view UCSC Genome Browser custom track)
Alignm length: 675
Alignm identity: 437
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 43, 100

Conread position: 4-701
Cow position: chr14:35388111-35387403 (view UCSC Genome Browser custom track)
Alignm length: 731
Alignm identity: 499
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 206

Conread position: 5-707
Cow position: chr14:35928210-35928934 (view UCSC Genome Browser custom track)
Alignm length: 739
Alignm identity: 485
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 35

Conread position: 6-707
Cow position: chr14:22018427-22019147 (view UCSC Genome Browser custom track)
Alignm length: 740
Alignm identity: 517
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 19

Conread position: 7-707
Cow position: chr14:44856381-44855672 (view UCSC Genome Browser custom track)
Alignm length: 732
Alignm identity: 496
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 119

Conread position: 17-410
Cow position: chr14:50133943-50134348 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 264
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 36, 200

Conread position: 17-707
Cow position: chr14:44685068-44685797 (view UCSC Genome Browser custom track)
Alignm length: 739
Alignm identity: 492
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 116

Conread position: 49-706
Cow position: chr14:38533230-38532539 (view UCSC Genome Browser custom track)
Alignm length: 698
Alignm identity: 453
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 15

Conread position: 123-686
Cow position: chr14:44225562-44226131 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 81

Conread position: 124-707
Cow position: chr14:45205205-45205832 (view UCSC Genome Browser custom track)
Alignm length: 633
Alignm identity: 403
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 30, 69

Conread position: 128-378
Cow position: chr14:17241386-17241641 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 168
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 31, 82

Conread position: 128-408
Cow position: chr14:2283138-2283424 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 190
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 29, 62

Conread position: 128-707
Cow position: chr14:17492306-17491702 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 82

Conread position: 128-707
Cow position: chr14:30585791-30585197 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 82

Conread position: 128-707
Cow position: chr14:30597228-30596630 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 80

Conread position: 143-707
Cow position: chr14:9044728-9045320 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 64

Conread position: 152-677
Cow position: chr14:14309886-14309353 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 16

Conread position: 157-500
Cow position: chr14:14422834-14422486 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 230
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 23, 192

Conread position: 158-707
Cow position: chr14:749754-750324 (view UCSC Genome Browser custom track)
Alignm length: 574
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 27

Conread position: 158-707
Cow position: chr14:45672866-45672290 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 50

Conread position: 162-707
Cow position: chr14:7831349-7830786 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 34

Conread position: 165-688
Cow position: chr14:33235187-33235717 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 344
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 24, 77

Conread position: 170-707
Cow position: chr14:45850418-45850976 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 26

Conread position: 172-413
Cow position: chr14:41085616-41085367 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 172
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 152, 217

Conread position: 172-707
Cow position: chr14:44130123-44130669 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 35

Conread position: 172-707
Cow position: chr14:45079732-45080275 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 349
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 154, 24

Conread position: 172-707
Cow position: chr14:45712786-45712232 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 35

Conread position: 180-706
Cow position: chr14:23256556-23257112 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 28

Conread position: 181-707
Cow position: chr14:44261890-44261339 (view UCSC Genome Browser custom track)
Alignm length: 552
Alignm identity: 349
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 102, 0

Conread position: 185-625
Cow position: chr14:47921225-47921671 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 290
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 150, 78

Conread position: 185-687
Cow position: chr14:43552625-43553155 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 346
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 57, 335

Conread position: 207-707
Cow position: chr14:29048668-29048149 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 86

Conread position: 211-707
Cow position: chr14:36967488-36968009 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 184

Conread position: 214-707
Cow position: chr14:47623804-47624314 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 93

Conread position: 221-707
Cow position: chr14:13660752-13660234 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 293

Conread position: 232-707
Cow position: chr14:13326858-13326386 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 317
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 80, 184

Conread position: 235-707
Cow position: chr14:16920428-16919936 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 264

Conread position: 241-707
Cow position: chr14:45767268-45767756 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 69

Conread position: 257-703
Cow position: chr14:12608502-12608932 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 18

Conread position: 267-707
Cow position: chr14:47654047-47654489 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 282
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 92, 73

Conread position: 275-707
Cow position: chr14:44421852-44422308 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 122

Conread position: 316-707
Cow position: chr14:43034534-43034133 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 274
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 42, 27

Conread position: 324-707
Cow position: chr14:27992935-27992554 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 266
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 34, 74

Conread position: 324-707
Cow position: chr14:33394426-33394022 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 218

Conread position: 354-707
Cow position: chr14:42151706-42152077 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 157

Conread position: 359-707
Cow position: chr14:45303973-45303610 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 210

Conread position: 406-707
Cow position: chr14:38816753-38816452 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 193
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 92, 111

Conread position: 408-706
Cow position: chr14:46464518-46464826 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 218
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 92, 231

Conread position: 416-649
Cow position: chr14:13622155-13621915 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 167
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 82, 56

Conread position: 421-703
Cow position: chr14:45029652-45029373 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 204
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 77, 58

Conread position: 421-707
Cow position: chr14:2283800-2284093 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 213
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 77, 107

Conread position: 421-707
Cow position: chr14:23901340-23901046 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 0

Conread position: 421-707
Cow position: chr14:50134533-50134824 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 206
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 149, 62

Conread position: 422-576
Cow position: chr14:1500493-1500646 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 114
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 76, 114

Conread position: 422-707
Cow position: chr14:15277116-15276826 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 206
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 119, 74

Conread position: 430-688
Cow position: chr14:31887148-31887411 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 177
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 45, 40

Conread position: 447-707
Cow position: chr14:41085296-41085028 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 194
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 52, 0

Conread position: 452-707
Cow position: chr14:9102601-9102343 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 177
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 51, 31

Conread position: 461-707
Cow position: chr14:13864581-13864329 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 188
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 37, 17

Conread position: 502-707
Cow position: chr14:37414346-37414132 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 156
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 73, 0

Conread position: 521-707
Cow position: chr14:45916978-45917170 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 144
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 34, 17

Conread position: 522-707
Cow position: chr14:13480165-13479980 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 140
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 168, 78

Conread position: 542-707
Cow position: chr14:19619808-19619974 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 129
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 33, 79

Conread position: 555-707
Cow position: chr14:44551488-44551636 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 114
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 135, 15

Conread position: 571-707
Cow position: chr14:44287633-44287496 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 103
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 119, 0

Show alignments to all cow chromosomes.