Cow genome map

Conread name: Ss1.1-Pig4-TMW8063E11.3

Conread position: 1-230
Cow position: chr16:44673677-44673912 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 171
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 40, 170

Conread position: 1-317
Cow position: chr16:2412337-2412026 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 211
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 45, 118

Conread position: 1-372
Cow position: chr16:5647923-5648293 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 243
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 56, 16

Conread position: 1-375
Cow position: chr16:14667110-14666730 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 259
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 45, 134

Conread position: 1-462
Cow position: chr16:16029455-16029916 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 308
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 57, 116

Conread position: 1-491
Cow position: chr16:29031596-29032100 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 174

Conread position: 1-500
Cow position: chr16:9776815-9777325 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 134

Conread position: 1-568
Cow position: chr16:49236437-49235853 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 26

Conread position: 1-580
Cow position: chr16:16687548-16688145 (view UCSC Genome Browser custom track)
Alignm length: 611
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 159

Conread position: 1-626
Cow position: chr16:32934817-32935453 (view UCSC Genome Browser custom track)
Alignm length: 651
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 19

Conread position: 1-683
Cow position: chr16:1429896-1430607 (view UCSC Genome Browser custom track)
Alignm length: 718
Alignm identity: 490
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 119

Conread position: 1-695
Cow position: chr16:18688452-18687731 (view UCSC Genome Browser custom track)
Alignm length: 732
Alignm identity: 497
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 280

Conread position: 1-698
Cow position: chr16:10204738-10204031 (view UCSC Genome Browser custom track)
Alignm length: 727
Alignm identity: 483
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 134

Conread position: 1-698
Cow position: chr16:15183485-15184202 (view UCSC Genome Browser custom track)
Alignm length: 728
Alignm identity: 486
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 78

Conread position: 1-707
Cow position: chr16:408352-407626 (view UCSC Genome Browser custom track)
Alignm length: 738
Alignm identity: 490
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 132

Conread position: 1-707
Cow position: chr16:1568765-1568046 (view UCSC Genome Browser custom track)
Alignm length: 741
Alignm identity: 494
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 92

Conread position: 1-707
Cow position: chr16:2484459-2483735 (view UCSC Genome Browser custom track)
Alignm length: 732
Alignm identity: 488
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 132

Conread position: 1-707
Cow position: chr16:2728637-2727893 (view UCSC Genome Browser custom track)
Alignm length: 752
Alignm identity: 503
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 140

Conread position: 1-707
Cow position: chr16:8817427-8816696 (view UCSC Genome Browser custom track)
Alignm length: 740
Alignm identity: 499
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 134

Conread position: 1-707
Cow position: chr16:12539245-12538516 (view UCSC Genome Browser custom track)
Alignm length: 740
Alignm identity: 492
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 134

Conread position: 1-707
Cow position: chr16:25084298-25085029 (view UCSC Genome Browser custom track)
Alignm length: 743
Alignm identity: 488
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 49

Conread position: 1-707
Cow position: chr16:25440294-25441026 (view UCSC Genome Browser custom track)
Alignm length: 743
Alignm identity: 498
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 134

Conread position: 1-707
Cow position: chr16:25458796-25458063 (view UCSC Genome Browser custom track)
Alignm length: 743
Alignm identity: 499
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 134

Conread position: 1-707
Cow position: chr16:28472418-28471700 (view UCSC Genome Browser custom track)
Alignm length: 740
Alignm identity: 484
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 132

Conread position: 1-707
Cow position: chr16:29045709-29046430 (view UCSC Genome Browser custom track)
Alignm length: 735
Alignm identity: 499
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 132

Conread position: 1-707
Cow position: chr16:40297495-40296770 (view UCSC Genome Browser custom track)
Alignm length: 736
Alignm identity: 491
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 129

Conread position: 1-707
Cow position: chr16:49257920-49257175 (view UCSC Genome Browser custom track)
Alignm length: 762
Alignm identity: 511
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 94

Conread position: 2-331
Cow position: chr16:12302778-12302425 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 236
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 46, 170

Conread position: 2-438
Cow position: chr16:29981951-29982388 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 121

Conread position: 2-680
Cow position: chr16:55112170-55111470 (view UCSC Genome Browser custom track)
Alignm length: 711
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 12

Conread position: 2-707
Cow position: chr16:36232923-36232202 (view UCSC Genome Browser custom track)
Alignm length: 732
Alignm identity: 522
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 230

Conread position: 3-550
Cow position: chr16:7677014-7676454 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 131

Conread position: 4-707
Cow position: chr16:15565434-15566158 (view UCSC Genome Browser custom track)
Alignm length: 736
Alignm identity: 485
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 130

Conread position: 5-574
Cow position: chr16:44964738-44965321 (view UCSC Genome Browser custom track)
Alignm length: 600
Alignm identity: 381
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 66, 12

Conread position: 7-245
Cow position: chr16:334673-334910 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 175
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 64, 159

Conread position: 7-337
Cow position: chr16:51083254-51083583 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 228
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 36, 30

Conread position: 7-707
Cow position: chr16:20255614-20254903 (view UCSC Genome Browser custom track)
Alignm length: 731
Alignm identity: 502
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 126

Conread position: 8-676
Cow position: chr16:29676611-29675934 (view UCSC Genome Browser custom track)
Alignm length: 700
Alignm identity: 482
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 125

Conread position: 8-701
Cow position: chr16:54647030-54647719 (view UCSC Genome Browser custom track)
Alignm length: 718
Alignm identity: 484
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 125

Conread position: 9-375
Cow position: chr16:39818321-39818684 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 254
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 34, 124

Conread position: 14-708
Cow position: chr16:19714144-19713477 (view UCSC Genome Browser custom track)
Alignm length: 708
Alignm identity: 464
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 116

Conread position: 24-683
Cow position: chr16:42051642-42050998 (view UCSC Genome Browser custom track)
Alignm length: 672
Alignm identity: 482
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 18

Conread position: 27-704
Cow position: chr16:52816353-52815678 (view UCSC Genome Browser custom track)
Alignm length: 683
Alignm identity: 150
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 44, 66

Conread position: 45-288
Cow position: chr16:37446622-37446391 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 166
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 28, 85

Conread position: 72-706
Cow position: chr16:43898515-43897860 (view UCSC Genome Browser custom track)
Alignm length: 664
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 225, 44

Conread position: 124-708
Cow position: chr16:9929357-9929949 (view UCSC Genome Browser custom track)
Alignm length: 599
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 18

Conread position: 128-707
Cow position: chr16:5918281-5918891 (view UCSC Genome Browser custom track)
Alignm length: 616
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 62

Conread position: 128-708
Cow position: chr16:6942422-6943033 (view UCSC Genome Browser custom track)
Alignm length: 613
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 82

Conread position: 129-707
Cow position: chr16:2239924-2239325 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 46

Conread position: 133-427
Cow position: chr16:15369242-15369543 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 211
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 10, 171

Conread position: 135-621
Cow position: chr16:24881881-24881369 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 327

Conread position: 135-707
Cow position: chr16:25340782-25341373 (view UCSC Genome Browser custom track)
Alignm length: 601
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 73

Conread position: 136-610
Cow position: chr16:31376413-31375950 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 219, 27

Conread position: 138-707
Cow position: chr16:5660684-5661258 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 60

Conread position: 151-707
Cow position: chr16:25157386-25156814 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 50

Conread position: 157-327
Cow position: chr16:45568922-45569088 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 121
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 133, 0

Conread position: 158-707
Cow position: chr16:31595-32148 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 40

Conread position: 158-707
Cow position: chr16:28171528-28170954 (view UCSC Genome Browser custom track)
Alignm length: 582
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 51

Conread position: 158-707
Cow position: chr16:31593074-31592496 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 0

Conread position: 159-627
Cow position: chr16:23670748-23670270 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 326
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 64, 26

Conread position: 159-701
Cow position: chr16:51685281-51685839 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 481

Conread position: 159-707
Cow position: chr16:15491554-15492116 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 32

Conread position: 161-479
Cow position: chr16:27004214-27004541 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 212
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 26, 36

Conread position: 163-707
Cow position: chr16:24155589-24155037 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 71

Conread position: 164-707
Cow position: chr16:11052010-11052570 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 355

Conread position: 165-707
Cow position: chr16:23253661-23253099 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 106

Conread position: 166-707
Cow position: chr16:5888342-5888874 (view UCSC Genome Browser custom track)
Alignm length: 556
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 245, 117

Conread position: 172-686
Cow position: chr16:40887418-40886872 (view UCSC Genome Browser custom track)
Alignm length: 556
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 34

Conread position: 172-703
Cow position: chr16:32605673-32606233 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 36

Conread position: 172-707
Cow position: chr16:6549671-6549116 (view UCSC Genome Browser custom track)
Alignm length: 561
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 35

Conread position: 172-707
Cow position: chr16:7905490-7906027 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 23

Conread position: 174-707
Cow position: chr16:42740564-42740015 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 18

Conread position: 179-428
Cow position: chr16:14422570-14422827 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 176
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 133, 11

Conread position: 180-707
Cow position: chr16:4303616-4303069 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 28

Conread position: 193-707
Cow position: chr16:26662623-26663156 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 30

Conread position: 194-707
Cow position: chr16:41559552-41560067 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 333
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 128, 53

Conread position: 209-707
Cow position: chr16:10437140-10437651 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 293

Conread position: 218-704
Cow position: chr16:47562588-47563086 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 57

Conread position: 221-708
Cow position: chr16:36282291-36282813 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 295

Conread position: 231-662
Cow position: chr16:52815710-52815275 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 70

Conread position: 233-707
Cow position: chr16:23982218-23982719 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 333

Conread position: 236-708
Cow position: chr16:27734895-27734394 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 0

Conread position: 249-664
Cow position: chr16:25152709-25153127 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 18

Conread position: 321-707
Cow position: chr16:2411968-2411561 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 198

Conread position: 326-687
Cow position: chr16:44388551-44388191 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 239
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 25, 79

Conread position: 354-707
Cow position: chr16:36362311-36361954 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 259
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 28, 23

Conread position: 355-707
Cow position: chr16:10808204-10808561 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 123

Conread position: 372-708
Cow position: chr16:11111881-11111534 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 230
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 36, 136

Conread position: 416-707
Cow position: chr16:16276394-16276098 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 209
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 155, 82

Conread position: 416-707
Cow position: chr16:34529436-34529729 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 209
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 89, 137

Conread position: 416-707
Cow position: chr16:56551239-56551533 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 215
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 62, 54

Conread position: 420-707
Cow position: chr16:39820749-39821040 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 0

Conread position: 421-707
Cow position: chr16:836145-836437 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 210
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 79, 11

Conread position: 421-707
Cow position: chr16:14666715-14666421 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 0

Conread position: 421-707
Cow position: chr16:25187757-25188051 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 0

Conread position: 422-609
Cow position: chr16:4441988-4442179 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 140
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 11, 0

Conread position: 422-706
Cow position: chr16:335415-335697 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 210
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 76, 47

Conread position: 422-707
Cow position: chr16:26650551-26650835 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 202
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 76, 25

Conread position: 423-707
Cow position: chr16:5483439-5483731 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 204
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 75, 0

Conread position: 469-669
Cow position: chr16:32935323-32935528 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 156
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 36, 16

Conread position: 487-678
Cow position: chr16:29032340-29032537 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 139
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 13, 125

Show alignments to all cow chromosomes.