Cow genome map
Conread name: | Ss1.1-Pig4-TMW8063E11.3 |
Conread position: | 1-192 |
Cow position: | chr17:15417104-15417299 (view UCSC Genome Browser custom track) |
Alignm length: | 199 |
Alignm identity: | 146 |
Alignm E-value: | 6e-28 |
Alignm gaps (pig, cow): | 36, 147 |
Conread position: | 1-234 |
Cow position: | chr17:3694422-3694185 (view UCSC Genome Browser custom track) |
Alignm length: | 242 |
Alignm identity: | 169 |
Alignm E-value: | 6e-27 |
Alignm gaps (pig, cow): | 42, 168 |
Conread position: | 1-613 |
Cow position: | chr17:2578819-2579440 (view UCSC Genome Browser custom track) |
Alignm length: | 637 |
Alignm identity: | 410 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 134 |
Conread position: | 1-624 |
Cow position: | chr17:15370349-15370974 (view UCSC Genome Browser custom track) |
Alignm length: | 648 |
Alignm identity: | 429 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 71, 31 |
Conread position: | 1-698 |
Cow position: | chr17:15322091-15322786 (view UCSC Genome Browser custom track) |
Alignm length: | 719 |
Alignm identity: | 489 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 116 |
Conread position: | 1-707 |
Cow position: | chr17:153200-152496 (view UCSC Genome Browser custom track) |
Alignm length: | 724 |
Alignm identity: | 510 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 70, 48 |
Conread position: | 1-707 |
Cow position: | chr17:4059361-4060088 (view UCSC Genome Browser custom track) |
Alignm length: | 740 |
Alignm identity: | 469 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 70, 25 |
Conread position: | 1-707 |
Cow position: | chr17:6089898-6089175 (view UCSC Genome Browser custom track) |
Alignm length: | 741 |
Alignm identity: | 477 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 61, 134 |
Conread position: | 1-707 |
Cow position: | chr17:13857531-13856783 (view UCSC Genome Browser custom track) |
Alignm length: | 757 |
Alignm identity: | 497 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 108 |
Conread position: | 1-707 |
Cow position: | chr17:13928938-13929654 (view UCSC Genome Browser custom track) |
Alignm length: | 733 |
Alignm identity: | 495 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 23, 16 |
Conread position: | 1-707 |
Cow position: | chr17:18104426-18103694 (view UCSC Genome Browser custom track) |
Alignm length: | 741 |
Alignm identity: | 505 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 132 |
Conread position: | 1-707 |
Cow position: | chr17:19270092-19269380 (view UCSC Genome Browser custom track) |
Alignm length: | 738 |
Alignm identity: | 487 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 148 |
Conread position: | 1-707 |
Cow position: | chr17:20400944-20401659 (view UCSC Genome Browser custom track) |
Alignm length: | 745 |
Alignm identity: | 505 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 126, 35 |
Conread position: | 1-708 |
Cow position: | chr17:4080899-4081626 (view UCSC Genome Browser custom track) |
Alignm length: | 739 |
Alignm identity: | 516 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 47, 94 |
Conread position: | 2-707 |
Cow position: | chr17:2587577-2588293 (view UCSC Genome Browser custom track) |
Alignm length: | 742 |
Alignm identity: | 463 |
Alignm E-value: | 1e-32 |
Alignm gaps (pig, cow): | 37, 249 |
Conread position: | 4-575 |
Cow position: | chr17:2146479-2147047 (view UCSC Genome Browser custom track) |
Alignm length: | 588 |
Alignm identity: | 383 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 41, 129 |
Conread position: | 5-413 |
Cow position: | chr17:31200812-31200393 (view UCSC Genome Browser custom track) |
Alignm length: | 426 |
Alignm identity: | 292 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 37, 15 |
Conread position: | 7-410 |
Cow position: | chr17:2286650-2287046 (view UCSC Genome Browser custom track) |
Alignm length: | 417 |
Alignm identity: | 275 |
Alignm E-value: | 3e-30 |
Alignm gaps (pig, cow): | 16, 131 |
Conread position: | 8-707 |
Cow position: | chr17:27345082-27345785 (view UCSC Genome Browser custom track) |
Alignm length: | 733 |
Alignm identity: | 493 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 41, 125 |
Conread position: | 20-402 |
Cow position: | chr17:12671057-12670677 (view UCSC Genome Browser custom track) |
Alignm length: | 389 |
Alignm identity: | 254 |
Alignm E-value: | 2e-37 |
Alignm gaps (pig, cow): | 219, 57 |
Conread position: | 24-708 |
Cow position: | chr17:2249304-2248597 (view UCSC Genome Browser custom track) |
Alignm length: | 719 |
Alignm identity: | 474 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 47, 85 |
Conread position: | 45-707 |
Cow position: | chr17:14326178-14325516 (view UCSC Genome Browser custom track) |
Alignm length: | 688 |
Alignm identity: | 478 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 26, 85 |
Conread position: | 128-525 |
Cow position: | chr17:11782747-11783168 (view UCSC Genome Browser custom track) |
Alignm length: | 423 |
Alignm identity: | 279 |
Alignm E-value: | 2e-38 |
Alignm gaps (pig, cow): | 31, 82 |
Conread position: | 128-707 |
Cow position: | chr17:249305-249919 (view UCSC Genome Browser custom track) |
Alignm length: | 620 |
Alignm identity: | 408 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 29, 246 |
Conread position: | 128-707 |
Cow position: | chr17:8208486-8209092 (view UCSC Genome Browser custom track) |
Alignm length: | 609 |
Alignm identity: | 414 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 29, 82 |
Conread position: | 128-707 |
Cow position: | chr17:14217649-14217038 (view UCSC Genome Browser custom track) |
Alignm length: | 613 |
Alignm identity: | 417 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 29, 83 |
Conread position: | 128-707 |
Cow position: | chr17:20666344-20665740 (view UCSC Genome Browser custom track) |
Alignm length: | 612 |
Alignm identity: | 408 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 29, 71 |
Conread position: | 128-707 |
Cow position: | chr17:22160292-22160902 (view UCSC Genome Browser custom track) |
Alignm length: | 612 |
Alignm identity: | 413 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 31, 82 |
Conread position: | 128-707 |
Cow position: | chr17:24633333-24633940 (view UCSC Genome Browser custom track) |
Alignm length: | 609 |
Alignm identity: | 410 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 31, 82 |
Conread position: | 138-707 |
Cow position: | chr17:15143974-15143381 (view UCSC Genome Browser custom track) |
Alignm length: | 600 |
Alignm identity: | 408 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 19, 72 |
Conread position: | 138-707 |
Cow position: | chr17:15157565-15156977 (view UCSC Genome Browser custom track) |
Alignm length: | 592 |
Alignm identity: | 395 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 19, 45 |
Conread position: | 138-707 |
Cow position: | chr17:24780438-24781034 (view UCSC Genome Browser custom track) |
Alignm length: | 601 |
Alignm identity: | 412 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 20, 60 |
Conread position: | 158-707 |
Cow position: | chr17:2261525-2262092 (view UCSC Genome Browser custom track) |
Alignm length: | 575 |
Alignm identity: | 398 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 41, 50 |
Conread position: | 158-707 |
Cow position: | chr17:9654041-9653470 (view UCSC Genome Browser custom track) |
Alignm length: | 573 |
Alignm identity: | 396 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 37, 50 |
Conread position: | 159-698 |
Cow position: | chr17:3643426-3642859 (view UCSC Genome Browser custom track) |
Alignm length: | 569 |
Alignm identity: | 394 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 166, 116 |
Conread position: | 159-706 |
Cow position: | chr17:14893574-14894147 (view UCSC Genome Browser custom track) |
Alignm length: | 585 |
Alignm identity: | 396 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 156, 39 |
Conread position: | 159-707 |
Cow position: | chr17:1383402-1382828 (view UCSC Genome Browser custom track) |
Alignm length: | 576 |
Alignm identity: | 394 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 36, 49 |
Conread position: | 164-698 |
Cow position: | chr17:11088306-11087747 (view UCSC Genome Browser custom track) |
Alignm length: | 561 |
Alignm identity: | 391 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 52, 17 |
Conread position: | 165-707 |
Cow position: | chr17:4294812-4295336 (view UCSC Genome Browser custom track) |
Alignm length: | 549 |
Alignm identity: | 381 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 162, 69 |
Conread position: | 171-686 |
Cow position: | chr17:22430054-22429519 (view UCSC Genome Browser custom track) |
Alignm length: | 543 |
Alignm identity: | 373 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 143, 25 |
Conread position: | 171-707 |
Cow position: | chr17:228874-228322 (view UCSC Genome Browser custom track) |
Alignm length: | 558 |
Alignm identity: | 366 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 159, 114 |
Conread position: | 172-427 |
Cow position: | chr17:32024771-32024510 (view UCSC Genome Browser custom track) |
Alignm length: | 265 |
Alignm identity: | 179 |
Alignm E-value: | 6e-27 |
Alignm gaps (pig, cow): | 140, 49 |
Conread position: | 172-663 |
Cow position: | chr17:1284334-1283847 (view UCSC Genome Browser custom track) |
Alignm length: | 512 |
Alignm identity: | 336 |
Alignm E-value: | 2e-39 |
Alignm gaps (pig, cow): | 154, 119 |
Conread position: | 172-707 |
Cow position: | chr17:25737086-25737649 (view UCSC Genome Browser custom track) |
Alignm length: | 564 |
Alignm identity: | 386 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 143, 0 |
Conread position: | 174-421 |
Cow position: | chr17:55255-55002 (view UCSC Genome Browser custom track) |
Alignm length: | 256 |
Alignm identity: | 178 |
Alignm E-value: | 3e-31 |
Alignm gaps (pig, cow): | 41, 22 |
Conread position: | 187-478 |
Cow position: | chr17:19609462-19609159 (view UCSC Genome Browser custom track) |
Alignm length: | 305 |
Alignm identity: | 210 |
Alignm E-value: | 5e-36 |
Alignm gaps (pig, cow): | 50, 41 |
Conread position: | 189-707 |
Cow position: | chr17:23857608-23857048 (view UCSC Genome Browser custom track) |
Alignm length: | 565 |
Alignm identity: | 390 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 70, 16 |
Conread position: | 207-707 |
Cow position: | chr17:15435252-15435777 (view UCSC Genome Browser custom track) |
Alignm length: | 527 |
Alignm identity: | 359 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 108, 150 |
Conread position: | 208-707 |
Cow position: | chr17:39933146-39933644 (view UCSC Genome Browser custom track) |
Alignm length: | 522 |
Alignm identity: | 354 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 102, 155 |
Conread position: | 214-707 |
Cow position: | chr17:16889595-16890105 (view UCSC Genome Browser custom track) |
Alignm length: | 516 |
Alignm identity: | 383 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 109, 63 |
Conread position: | 214-707 |
Cow position: | chr17:44853459-44852946 (view UCSC Genome Browser custom track) |
Alignm length: | 518 |
Alignm identity: | 340 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 112, 46 |
Conread position: | 218-707 |
Cow position: | chr17:6002545-6002031 (view UCSC Genome Browser custom track) |
Alignm length: | 520 |
Alignm identity: | 335 |
Alignm E-value: | 5e-36 |
Alignm gaps (pig, cow): | 94, 179 |
Conread position: | 225-613 |
Cow position: | chr17:28109571-28109974 (view UCSC Genome Browser custom track) |
Alignm length: | 411 |
Alignm identity: | 282 |
Alignm E-value: | 4.06377e-44 |
Alignm gaps (pig, cow): | 130, 108 |
Conread position: | 225-698 |
Cow position: | chr17:4671687-4672169 (view UCSC Genome Browser custom track) |
Alignm length: | 491 |
Alignm identity: | 310 |
Alignm E-value: | 3e-32 |
Alignm gaps (pig, cow): | 96, 85 |
Conread position: | 228-708 |
Cow position: | chr17:35591703-35592200 (view UCSC Genome Browser custom track) |
Alignm length: | 503 |
Alignm identity: | 357 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 127, 28 |
Conread position: | 299-703 |
Cow position: | chr17:42264083-42264485 (view UCSC Genome Browser custom track) |
Alignm length: | 417 |
Alignm identity: | 281 |
Alignm E-value: | 3.00004e-41 |
Alignm gaps (pig, cow): | 60, 205 |
Conread position: | 317-698 |
Cow position: | chr17:16859982-16859579 (view UCSC Genome Browser custom track) |
Alignm length: | 405 |
Alignm identity: | 274 |
Alignm E-value: | 9.00054e-42 |
Alignm gaps (pig, cow): | 38, 167 |
Conread position: | 318-707 |
Cow position: | chr17:1658982-1658589 (view UCSC Genome Browser custom track) |
Alignm length: | 402 |
Alignm identity: | 259 |
Alignm E-value: | 3e-30 |
Alignm gaps (pig, cow): | 15, 164 |
Conread position: | 321-707 |
Cow position: | chr17:1879670-1880077 (view UCSC Genome Browser custom track) |
Alignm length: | 409 |
Alignm identity: | 280 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 26, 332 |
Conread position: | 324-707 |
Cow position: | chr17:15849980-15850382 (view UCSC Genome Browser custom track) |
Alignm length: | 404 |
Alignm identity: | 273 |
Alignm E-value: | 9.94922e-44 |
Alignm gaps (pig, cow): | 39, 219 |
Conread position: | 325-707 |
Cow position: | chr17:43988120-43988519 (view UCSC Genome Browser custom track) |
Alignm length: | 404 |
Alignm identity: | 277 |
Alignm E-value: | 1.4013e-45 |
Alignm gaps (pig, cow): | 30, 265 |
Conread position: | 327-706 |
Cow position: | chr17:20183642-20183246 (view UCSC Genome Browser custom track) |
Alignm length: | 400 |
Alignm identity: | 282 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 28, 184 |
Conread position: | 359-707 |
Cow position: | chr17:18185906-18185547 (view UCSC Genome Browser custom track) |
Alignm length: | 364 |
Alignm identity: | 255 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 48, 201 |
Conread position: | 367-706 |
Cow position: | chr17:1946617-1946960 (view UCSC Genome Browser custom track) |
Alignm length: | 348 |
Alignm identity: | 241 |
Alignm E-value: | 4.06377e-44 |
Alignm gaps (pig, cow): | 78, 9 |
Conread position: | 416-707 |
Cow position: | chr17:22131921-22132216 (view UCSC Genome Browser custom track) |
Alignm length: | 299 |
Alignm identity: | 214 |
Alignm E-value: | 1.4013e-45 |
Alignm gaps (pig, cow): | 154, 88 |
Conread position: | 420-707 |
Cow position: | chr17:2287080-2287372 (view UCSC Genome Browser custom track) |
Alignm length: | 296 |
Alignm identity: | 222 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 78, 98 |
Conread position: | 421-706 |
Cow position: | chr17:2173571-2173863 (view UCSC Genome Browser custom track) |
Alignm length: | 294 |
Alignm identity: | 205 |
Alignm E-value: | 2e-38 |
Alignm gaps (pig, cow): | 58, 244 |
Conread position: | 421-707 |
Cow position: | chr17:6259537-6259831 (view UCSC Genome Browser custom track) |
Alignm length: | 295 |
Alignm identity: | 207 |
Alignm E-value: | 8.00001e-41 |
Alignm gaps (pig, cow): | 77, 0 |
Conread position: | 422-690 |
Cow position: | chr17:20088037-20087764 (view UCSC Genome Browser custom track) |
Alignm length: | 276 |
Alignm identity: | 201 |
Alignm E-value: | 9.94922e-44 |
Alignm gaps (pig, cow): | 76, 98 |
Conread position: | 459-708 |
Cow position: | chr17:18027027-18026770 (view UCSC Genome Browser custom track) |
Alignm length: | 258 |
Alignm identity: | 189 |
Alignm E-value: | 9.00054e-42 |
Alignm gaps (pig, cow): | 39, 0 |
Conread position: | 463-707 |
Cow position: | chr17:2555858-2556109 (view UCSC Genome Browser custom track) |
Alignm length: | 253 |
Alignm identity: | 183 |
Alignm E-value: | 2e-37 |
Alignm gaps (pig, cow): | 35, 10 |
Conread position: | 481-707 |
Cow position: | chr17:23324702-23324468 (view UCSC Genome Browser custom track) |
Alignm length: | 236 |
Alignm identity: | 166 |
Alignm E-value: | 2e-28 |
Alignm gaps (pig, cow): | 17, 158 |
Conread position: | 573-707 |
Cow position: | chr17:31199792-31199657 (view UCSC Genome Browser custom track) |
Alignm length: | 137 |
Alignm identity: | 109 |
Alignm E-value: | 2e-26 |
Alignm gaps (pig, cow): | 18, 106 |
Show alignments to all cow chromosomes.