Cow genome map

Conread name: Ss1.1-Pig4-TMW8063E11.3

Conread position: 1-192
Cow position: chr17:15417104-15417299 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 146
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 36, 147

Conread position: 1-234
Cow position: chr17:3694422-3694185 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 169
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 42, 168

Conread position: 1-613
Cow position: chr17:2578819-2579440 (view UCSC Genome Browser custom track)
Alignm length: 637
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 134

Conread position: 1-624
Cow position: chr17:15370349-15370974 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 31

Conread position: 1-698
Cow position: chr17:15322091-15322786 (view UCSC Genome Browser custom track)
Alignm length: 719
Alignm identity: 489
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 116

Conread position: 1-707
Cow position: chr17:153200-152496 (view UCSC Genome Browser custom track)
Alignm length: 724
Alignm identity: 510
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 48

Conread position: 1-707
Cow position: chr17:4059361-4060088 (view UCSC Genome Browser custom track)
Alignm length: 740
Alignm identity: 469
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 25

Conread position: 1-707
Cow position: chr17:6089898-6089175 (view UCSC Genome Browser custom track)
Alignm length: 741
Alignm identity: 477
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 134

Conread position: 1-707
Cow position: chr17:13857531-13856783 (view UCSC Genome Browser custom track)
Alignm length: 757
Alignm identity: 497
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 108

Conread position: 1-707
Cow position: chr17:13928938-13929654 (view UCSC Genome Browser custom track)
Alignm length: 733
Alignm identity: 495
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 16

Conread position: 1-707
Cow position: chr17:18104426-18103694 (view UCSC Genome Browser custom track)
Alignm length: 741
Alignm identity: 505
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 132

Conread position: 1-707
Cow position: chr17:19270092-19269380 (view UCSC Genome Browser custom track)
Alignm length: 738
Alignm identity: 487
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 148

Conread position: 1-707
Cow position: chr17:20400944-20401659 (view UCSC Genome Browser custom track)
Alignm length: 745
Alignm identity: 505
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 35

Conread position: 1-708
Cow position: chr17:4080899-4081626 (view UCSC Genome Browser custom track)
Alignm length: 739
Alignm identity: 516
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 94

Conread position: 2-707
Cow position: chr17:2587577-2588293 (view UCSC Genome Browser custom track)
Alignm length: 742
Alignm identity: 463
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 37, 249

Conread position: 4-575
Cow position: chr17:2146479-2147047 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 129

Conread position: 5-413
Cow position: chr17:31200812-31200393 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 15

Conread position: 7-410
Cow position: chr17:2286650-2287046 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 275
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 16, 131

Conread position: 8-707
Cow position: chr17:27345082-27345785 (view UCSC Genome Browser custom track)
Alignm length: 733
Alignm identity: 493
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 125

Conread position: 20-402
Cow position: chr17:12671057-12670677 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 254
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 219, 57

Conread position: 24-708
Cow position: chr17:2249304-2248597 (view UCSC Genome Browser custom track)
Alignm length: 719
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 85

Conread position: 45-707
Cow position: chr17:14326178-14325516 (view UCSC Genome Browser custom track)
Alignm length: 688
Alignm identity: 478
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 85

Conread position: 128-525
Cow position: chr17:11782747-11783168 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 279
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 31, 82

Conread position: 128-707
Cow position: chr17:249305-249919 (view UCSC Genome Browser custom track)
Alignm length: 620
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 246

Conread position: 128-707
Cow position: chr17:8208486-8209092 (view UCSC Genome Browser custom track)
Alignm length: 609
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 82

Conread position: 128-707
Cow position: chr17:14217649-14217038 (view UCSC Genome Browser custom track)
Alignm length: 613
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 83

Conread position: 128-707
Cow position: chr17:20666344-20665740 (view UCSC Genome Browser custom track)
Alignm length: 612
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 71

Conread position: 128-707
Cow position: chr17:22160292-22160902 (view UCSC Genome Browser custom track)
Alignm length: 612
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 82

Conread position: 128-707
Cow position: chr17:24633333-24633940 (view UCSC Genome Browser custom track)
Alignm length: 609
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 82

Conread position: 138-707
Cow position: chr17:15143974-15143381 (view UCSC Genome Browser custom track)
Alignm length: 600
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 72

Conread position: 138-707
Cow position: chr17:15157565-15156977 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 45

Conread position: 138-707
Cow position: chr17:24780438-24781034 (view UCSC Genome Browser custom track)
Alignm length: 601
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 60

Conread position: 158-707
Cow position: chr17:2261525-2262092 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 50

Conread position: 158-707
Cow position: chr17:9654041-9653470 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 50

Conread position: 159-698
Cow position: chr17:3643426-3642859 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 116

Conread position: 159-706
Cow position: chr17:14893574-14894147 (view UCSC Genome Browser custom track)
Alignm length: 585
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 39

Conread position: 159-707
Cow position: chr17:1383402-1382828 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 49

Conread position: 164-698
Cow position: chr17:11088306-11087747 (view UCSC Genome Browser custom track)
Alignm length: 561
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 17

Conread position: 165-707
Cow position: chr17:4294812-4295336 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 69

Conread position: 171-686
Cow position: chr17:22430054-22429519 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 25

Conread position: 171-707
Cow position: chr17:228874-228322 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 114

Conread position: 172-427
Cow position: chr17:32024771-32024510 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 179
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 140, 49

Conread position: 172-663
Cow position: chr17:1284334-1283847 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 336
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 154, 119

Conread position: 172-707
Cow position: chr17:25737086-25737649 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 0

Conread position: 174-421
Cow position: chr17:55255-55002 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 178
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 41, 22

Conread position: 187-478
Cow position: chr17:19609462-19609159 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 210
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 50, 41

Conread position: 189-707
Cow position: chr17:23857608-23857048 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 16

Conread position: 207-707
Cow position: chr17:15435252-15435777 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 150

Conread position: 208-707
Cow position: chr17:39933146-39933644 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 155

Conread position: 214-707
Cow position: chr17:16889595-16890105 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 63

Conread position: 214-707
Cow position: chr17:44853459-44852946 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 46

Conread position: 218-707
Cow position: chr17:6002545-6002031 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 335
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 94, 179

Conread position: 225-613
Cow position: chr17:28109571-28109974 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 282
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 130, 108

Conread position: 225-698
Cow position: chr17:4671687-4672169 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 310
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 96, 85

Conread position: 228-708
Cow position: chr17:35591703-35592200 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 28

Conread position: 299-703
Cow position: chr17:42264083-42264485 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 281
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 60, 205

Conread position: 317-698
Cow position: chr17:16859982-16859579 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 274
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 38, 167

Conread position: 318-707
Cow position: chr17:1658982-1658589 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 259
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 15, 164

Conread position: 321-707
Cow position: chr17:1879670-1880077 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 332

Conread position: 324-707
Cow position: chr17:15849980-15850382 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 273
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 39, 219

Conread position: 325-707
Cow position: chr17:43988120-43988519 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 277
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 30, 265

Conread position: 327-706
Cow position: chr17:20183642-20183246 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 184

Conread position: 359-707
Cow position: chr17:18185906-18185547 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 201

Conread position: 367-706
Cow position: chr17:1946617-1946960 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 241
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 78, 9

Conread position: 416-707
Cow position: chr17:22131921-22132216 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 214
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 154, 88

Conread position: 420-707
Cow position: chr17:2287080-2287372 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 98

Conread position: 421-706
Cow position: chr17:2173571-2173863 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 205
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 58, 244

Conread position: 421-707
Cow position: chr17:6259537-6259831 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 207
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 77, 0

Conread position: 422-690
Cow position: chr17:20088037-20087764 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 201
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 76, 98

Conread position: 459-708
Cow position: chr17:18027027-18026770 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 189
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 39, 0

Conread position: 463-707
Cow position: chr17:2555858-2556109 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 183
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 35, 10

Conread position: 481-707
Cow position: chr17:23324702-23324468 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 166
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 17, 158

Conread position: 573-707
Cow position: chr17:31199792-31199657 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 109
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 18, 106

Show alignments to all cow chromosomes.