Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8063E11.3 |
| Conread position: | 1-364 |
| Cow position: | chr18:29236230-29236610 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 253 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-540 |
| Cow position: | chr18:25349503-25350059 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 119 |
| Conread position: | 1-570 |
| Cow position: | chr18:29762943-29763505 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 170 |
| Conread position: | 1-573 |
| Cow position: | chr18:45958163-45958736 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 95 |
| Conread position: | 1-686 |
| Cow position: | chr18:37504532-37505235 (view UCSC Genome Browser custom track) |
| Alignm length: | 714 |
| Alignm identity: | 485 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 31 |
| Conread position: | 1-700 |
| Cow position: | chr18:16177151-16176427 (view UCSC Genome Browser custom track) |
| Alignm length: | 734 |
| Alignm identity: | 481 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 127 |
| Conread position: | 1-707 |
| Cow position: | chr18:23797113-23797841 (view UCSC Genome Browser custom track) |
| Alignm length: | 739 |
| Alignm identity: | 490 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 134 |
| Conread position: | 1-707 |
| Cow position: | chr18:27838835-27838122 (view UCSC Genome Browser custom track) |
| Alignm length: | 735 |
| Alignm identity: | 482 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 134 |
| Conread position: | 1-707 |
| Cow position: | chr18:28974435-28973709 (view UCSC Genome Browser custom track) |
| Alignm length: | 735 |
| Alignm identity: | 501 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 116 |
| Conread position: | 1-707 |
| Cow position: | chr18:36507795-36508526 (view UCSC Genome Browser custom track) |
| Alignm length: | 740 |
| Alignm identity: | 499 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 134 |
| Conread position: | 2-707 |
| Cow position: | chr18:33335329-33336061 (view UCSC Genome Browser custom track) |
| Alignm length: | 742 |
| Alignm identity: | 502 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 195 |
| Conread position: | 2-707 |
| Cow position: | chr18:41841362-41840631 (view UCSC Genome Browser custom track) |
| Alignm length: | 740 |
| Alignm identity: | 502 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 133 |
| Conread position: | 4-673 |
| Cow position: | chr18:16660544-16659846 (view UCSC Genome Browser custom track) |
| Alignm length: | 708 |
| Alignm identity: | 474 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 239 |
| Conread position: | 4-707 |
| Cow position: | chr18:54024902-54024166 (view UCSC Genome Browser custom track) |
| Alignm length: | 746 |
| Alignm identity: | 497 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 526 |
| Conread position: | 5-312 |
| Cow position: | chr18:43200259-43200564 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 221 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 34, 139 |
| Conread position: | 5-409 |
| Cow position: | chr18:35287720-35288126 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 269 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 36, 117 |
| Conread position: | 9-703 |
| Cow position: | chr18:43147442-43146736 (view UCSC Genome Browser custom track) |
| Alignm length: | 729 |
| Alignm identity: | 504 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 95 |
| Conread position: | 13-433 |
| Cow position: | chr18:14129769-14130195 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 288 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 33, 122 |
| Conread position: | 14-707 |
| Cow position: | chr18:35334972-35335673 (view UCSC Genome Browser custom track) |
| Alignm length: | 726 |
| Alignm identity: | 500 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 117 |
| Conread position: | 45-698 |
| Cow position: | chr18:51480349-51481024 (view UCSC Genome Browser custom track) |
| Alignm length: | 684 |
| Alignm identity: | 464 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 87 |
| Conread position: | 99-572 |
| Cow position: | chr18:51659985-51660469 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 319 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 17, 46 |
| Conread position: | 124-707 |
| Cow position: | chr18:47741598-47742212 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 86 |
| Conread position: | 128-525 |
| Cow position: | chr18:37586079-37585659 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 279 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 31, 82 |
| Conread position: | 128-672 |
| Cow position: | chr18:44621342-44621917 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 62 |
| Conread position: | 128-703 |
| Cow position: | chr18:33953986-33953379 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 85 |
| Conread position: | 138-707 |
| Cow position: | chr18:19351972-19352579 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 72 |
| Conread position: | 138-707 |
| Cow position: | chr18:55089330-55088731 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 72 |
| Conread position: | 156-707 |
| Cow position: | chr18:14415595-14416170 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 8 |
| Conread position: | 156-707 |
| Cow position: | chr18:37599915-37599348 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 22 |
| Conread position: | 158-389 |
| Cow position: | chr18:42244929-42244699 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 162 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 197, 34 |
| Conread position: | 158-413 |
| Cow position: | chr18:54002120-54002375 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 41, 51 |
| Conread position: | 158-591 |
| Cow position: | chr18:16078321-16078769 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 301 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 41, 50 |
| Conread position: | 158-707 |
| Cow position: | chr18:11275473-11274912 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 156 |
| Conread position: | 162-707 |
| Cow position: | chr18:32293393-32293960 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 343 |
| Conread position: | 162-707 |
| Cow position: | chr18:39748200-39748772 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 105 |
| Conread position: | 164-707 |
| Cow position: | chr18:9187139-9186574 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 361 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 150, 26 |
| Conread position: | 164-707 |
| Cow position: | chr18:51310206-51310779 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 54 |
| Conread position: | 172-706 |
| Cow position: | chr18:48221509-48222072 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 89 |
| Conread position: | 172-707 |
| Cow position: | chr18:33358495-33359060 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 528 |
| Conread position: | 172-708 |
| Cow position: | chr18:54172213-54171665 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 370 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 51, 91 |
| Conread position: | 189-707 |
| Cow position: | chr18:23944724-23944181 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 331 |
| Conread position: | 209-707 |
| Cow position: | chr18:47719902-47719390 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 252 |
| Conread position: | 213-707 |
| Cow position: | chr18:22602158-22602681 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 218-707 |
| Cow position: | chr18:1520804-1521322 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 359 |
| Conread position: | 221-707 |
| Cow position: | chr18:51257662-51258177 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 269 |
| Conread position: | 225-707 |
| Cow position: | chr18:2019996-2019492 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 225-707 |
| Cow position: | chr18:40478068-40478577 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 227-688 |
| Cow position: | chr18:18897194-18897665 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 307 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 22, 158 |
| Conread position: | 228-561 |
| Cow position: | chr18:32651682-32652036 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 228-678 |
| Cow position: | chr18:17992875-17992401 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 179 |
| Conread position: | 228-707 |
| Cow position: | chr18:33268530-33269019 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 341 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 86, 44 |
| Conread position: | 236-625 |
| Cow position: | chr18:27986723-27987138 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 283 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 79, 251 |
| Conread position: | 253-688 |
| Cow position: | chr18:44601254-44601693 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 289 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 52, 124 |
| Conread position: | 307-707 |
| Cow position: | chr18:43200840-43201248 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 17 |
| Conread position: | 317-542 |
| Cow position: | chr18:51610789-51611009 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 38, 5 |
| Conread position: | 324-707 |
| Cow position: | chr18:6869466-6869065 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 354-707 |
| Cow position: | chr18:16533805-16534172 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 48 |
| Conread position: | 354-707 |
| Cow position: | chr18:53785662-53786033 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 154 |
| Conread position: | 360-669 |
| Cow position: | chr18:16877313-16877632 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 210 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 57, 105 |
| Conread position: | 409-707 |
| Cow position: | chr18:29236706-29237003 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 89, 48 |
| Conread position: | 415-688 |
| Cow position: | chr18:35288426-35288712 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 83, 58 |
| Conread position: | 416-707 |
| Cow position: | chr18:2887126-2886827 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 420-707 |
| Cow position: | chr18:54044802-54044514 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 213 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 156, 78 |
| Conread position: | 421-566 |
| Cow position: | chr18:22869655-22869801 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 421-707 |
| Cow position: | chr18:16393741-16393454 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 195 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 77, 111 |
| Conread position: | 421-707 |
| Cow position: | chr18:51341586-51341880 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 107 |
| Conread position: | 421-707 |
| Cow position: | chr18:51689526-51689818 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 454-707 |
| Cow position: | chr18:14130323-14130578 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 44, 7 |
| Conread position: | 466-686 |
| Cow position: | chr18:36258412-36258190 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 478-707 |
| Cow position: | chr18:52650888-52651114 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 22, 50 |
| Conread position: | 504-707 |
| Cow position: | chr18:114378-114585 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 20, 49 |
| Conread position: | 532-707 |
| Cow position: | chr18:51463063-51462884 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 42, 118 |
| Conread position: | 539-707 |
| Cow position: | chr18:25350688-25350859 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 542-707 |
| Cow position: | chr18:19539558-19539386 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 547-708 |
| Cow position: | chr18:24040700-24040538 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 141, 0 |
| Conread position: | 558-707 |
| Cow position: | chr18:32652264-32652413 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 69, 47 |
| Conread position: | 577-707 |
| Cow position: | chr18:16843273-16843144 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 105 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 111, 72 |
Show alignments to all cow chromosomes.